Wall clock time and date at job start Tue Mar 31 2020 20:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34770 * 116.99588 * 2 1 4 4 O 1.21480 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47630 * 119.99457 * 179.97438 * 3 2 1 6 6 N 1.30985 * 125.18333 * 0.02562 * 5 3 2 7 7 C 1.34224 * 109.66345 * 179.97438 * 6 5 3 8 8 C 1.40561 * 133.52255 * 180.02562 * 7 6 5 9 9 C 1.36619 * 118.36524 * 180.25028 * 8 7 6 10 10 C 1.39721 * 119.70919 * 359.47020 * 9 8 7 11 11 N 1.38873 * 119.37279 * 180.27642 * 10 9 8 12 12 C 1.38398 * 120.00035 * 6.50092 * 11 10 9 13 13 C 1.38967 * 119.99769 * 61.70252 * 12 11 10 14 14 H 1.07994 * 119.99810 * 202.20888 * 13 12 11 15 15 C 1.40863 * 119.99599 * 22.21146 * 13 12 11 16 16 N 1.30320 * 120.00318 * 9.77465 * 15 13 12 17 17 Si 1.86798 * 119.99352 * 189.77155 * 15 13 12 18 18 H 1.48502 * 109.47356 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47090 * 120.00249 * 17 15 13 20 20 H 1.48494 * 109.47351 * 239.99918 * 17 15 13 21 21 C 1.41137 * 120.00141 * 241.70186 * 12 11 10 22 22 C 1.43206 * 119.99973 * 185.44242 * 21 12 11 23 23 N 9.35737 * 174.53517 * 220.32735 * 6 1 2 24 24 C 1.43199 * 120.00212 * 5.44178 * 21 12 11 25 25 N 9.41484 * 155.91226 * 305.96637 * 3 1 2 26 26 N 1.32238 * 121.25651 * 0.56276 * 10 9 8 27 27 C 1.32507 * 121.37551 * 359.70889 * 26 10 9 28 28 N 1.37297 * 133.64149 * 180.02562 * 27 26 10 29 29 H 0.96998 * 126.41938 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47621 * 300.00038 * 1 2 3 31 31 H 1.08998 * 109.46954 * 60.00365 * 1 2 3 32 32 H 1.09002 * 109.47191 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.81560 * 359.97438 * 8 7 6 34 34 H 1.07994 * 120.14069 * 179.74214 * 9 8 7 35 35 H 0.97008 * 119.99970 * 186.50954 * 11 10 9 36 36 H 0.97001 * 119.99608 * 184.98313 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2009 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5380 1.2781 0.0006 6 7 4.3477 0.2485 0.0006 7 6 5.6205 0.6748 0.0006 8 6 6.8620 0.0158 0.0002 9 6 7.9989 0.7733 0.0056 10 6 7.9023 2.1672 0.0002 11 7 9.0625 2.9304 -0.0001 12 6 10.2954 2.3153 -0.1307 13 6 10.5938 1.5943 -1.2806 14 1 11.3630 0.8365 -1.2585 15 6 9.8931 1.8520 -2.4751 16 7 9.1046 2.8863 -2.5579 17 14 10.0942 0.7111 -3.9405 18 1 11.0383 -0.3809 -3.5918 19 1 8.7759 0.1293 -4.2995 20 1 10.6279 1.4776 -5.0950 21 6 11.2496 2.4203 0.9039 22 6 12.5650 1.8843 0.7219 23 7 13.6086 1.4568 0.5804 24 6 10.9024 3.0628 2.1357 25 7 10.6276 3.5730 3.1100 26 7 6.7271 2.7735 0.0009 27 6 5.5953 2.0845 0.0011 28 7 4.2693 2.4404 0.0013 29 1 3.9155 3.3436 0.0010 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 6.9158 -1.0628 0.0002 34 1 8.9680 0.2968 0.0097 35 1 9.0088 3.8946 0.0914 36 1 8.5671 3.0239 -3.3536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:34 Heat of formation + Delta-G solvation = 73.715121 kcal Electronic energy + Delta-G solvation = -27270.794132 eV Core-core repulsion = 23142.735017 eV Total energy + Delta-G solvation = -4128.059114 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27583 -40.44506 -39.09230 -36.93982 -36.65686 -35.29943 -34.84813 -33.70120 -33.48829 -31.28613 -30.65379 -29.21208 -27.52649 -27.31716 -24.72072 -23.18435 -22.24709 -21.36259 -20.96686 -19.41817 -18.70728 -17.79214 -17.60666 -17.11292 -16.84047 -16.80190 -16.44485 -16.21699 -15.42781 -15.12039 -14.53727 -14.02387 -13.90183 -13.61482 -13.05374 -12.93104 -12.83538 -12.76464 -12.63347 -12.40687 -12.37504 -11.91472 -11.78441 -11.76116 -11.63903 -11.17854 -11.12073 -11.11524 -11.09945 -11.05215 -10.95362 -10.75197 -10.24126 -9.72376 -8.99737 -8.75374 -8.37947 -7.88645 -7.04708 -5.63001 0.57058 1.63565 1.75030 1.82829 2.10631 2.62814 2.72407 2.73298 2.95966 3.13959 3.30035 3.63550 3.78321 3.96032 3.98047 4.05270 4.19143 4.24496 4.58562 4.80648 4.89593 5.00954 5.04415 5.09081 5.19502 5.24424 5.44955 5.75498 5.89531 5.98879 6.05307 6.13590 6.24458 6.28543 6.67908 6.88174 6.98129 7.10097 7.25709 7.46861 7.54007 7.72294 7.89980 8.02841 8.53923 8.83797 9.00071 9.04584 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003268 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.462252 B = 8565.183536 C = 9692.440600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.566 3.434 4 O -0.505 6.505 5 C 0.194 3.806 6 N -0.386 5.386 7 C -0.068 4.068 8 C 0.018 3.982 9 C -0.207 4.207 10 C 0.500 3.500 11 N -0.623 5.623 12 C 0.373 3.627 13 C -0.374 4.374 14 H 0.117 0.883 15 C 0.069 3.931 16 N -0.713 5.713 17 Si 0.921 3.079 18 H -0.244 1.244 19 H -0.260 1.260 20 H -0.262 1.262 21 C -0.299 4.299 22 C 0.324 3.676 23 N -0.526 5.526 24 C 0.307 3.693 25 N -0.525 5.525 26 N -0.564 5.564 27 C 0.324 3.676 28 N -0.554 5.554 29 H 0.432 0.568 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.411 0.589 36 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.655 -5.213 -4.794 16.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.242 6.242 3 C 0.408 3.592 4 O -0.392 6.392 5 C -0.067 4.067 6 N -0.110 5.110 7 C -0.195 4.195 8 C -0.008 4.008 9 C -0.232 4.232 10 C 0.253 3.747 11 N -0.246 5.246 12 C 0.270 3.730 13 C -0.401 4.401 14 H 0.135 0.865 15 C -0.164 4.164 16 N -0.331 5.331 17 Si 0.741 3.259 18 H -0.167 1.167 19 H -0.184 1.184 20 H -0.187 1.187 21 C -0.317 4.317 22 C 0.015 3.985 23 N -0.207 5.207 24 C -0.002 4.002 25 N -0.206 5.206 26 N -0.291 5.291 27 C 0.085 3.915 28 N -0.173 5.173 29 H 0.272 0.728 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.177 0.823 35 H 0.249 0.751 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.095 -4.697 -3.672 15.304 hybrid contribution -0.555 0.749 -1.094 1.438 sum -14.650 -3.947 -4.766 15.903 Atomic orbital electron populations 1.23410 0.75203 1.04290 1.02830 1.86649 1.23600 1.30484 1.83491 1.19029 0.85141 0.82137 0.72886 1.90901 1.65737 1.35991 1.46552 1.20532 0.90820 0.81652 1.13687 1.69863 1.00266 1.28474 1.12446 1.19349 0.92365 0.91615 1.16217 1.20321 0.87792 1.00348 0.92373 1.21481 1.00692 0.92817 1.08217 1.17696 0.84359 0.87498 0.85169 1.41381 1.01206 1.09377 1.72648 1.16709 0.80783 0.85673 0.89826 1.20419 1.13896 1.14411 0.91373 0.86510 1.26523 0.92905 0.95141 1.01787 1.69472 1.12930 1.20358 1.30327 0.85937 0.80699 0.80509 0.78715 1.16706 1.18396 1.18662 1.12892 0.90825 1.34195 0.93823 1.24637 0.91121 0.90774 0.91927 1.81111 1.12502 1.17137 1.09987 1.25087 0.92433 0.90989 0.91648 1.80994 1.09591 1.17455 1.12590 1.65671 0.94837 1.39651 1.28931 1.18332 0.84648 0.90637 0.97929 1.42050 1.03568 1.09468 1.62195 0.72776 0.91518 0.91542 0.87402 0.83789 0.82282 0.75065 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.33 -3.81 10.56 -40.68 -0.43 -4.24 16 3 C 0.57 7.53 7.97 34.56 0.28 7.80 16 4 O -0.51 -7.08 16.87 -19.25 -0.32 -7.41 16 5 C 0.19 2.90 7.92 -154.33 -1.22 1.67 16 6 N -0.39 -6.27 11.21 -8.72 -0.10 -6.37 16 7 C -0.07 -1.14 7.22 -84.90 -0.61 -1.75 16 8 C 0.02 0.27 10.17 -39.29 -0.40 -0.13 16 9 C -0.21 -3.32 8.64 -39.61 -0.34 -3.66 16 10 C 0.50 8.83 6.35 -155.06 -0.98 7.85 16 11 N -0.62 -11.16 3.26 -9.69 -0.03 -11.19 16 12 C 0.37 6.88 4.85 -83.53 -0.40 6.48 16 13 C -0.37 -6.67 6.82 -38.32 -0.26 -6.93 16 14 H 0.12 2.08 7.16 -52.49 -0.38 1.71 16 15 C 0.07 1.17 4.93 -17.20 -0.08 1.08 16 16 N -0.71 -12.61 11.21 55.60 0.62 -11.99 16 17 Si 0.92 13.52 29.58 -169.99 -5.03 8.49 16 18 H -0.24 -3.61 7.11 56.52 0.40 -3.20 16 19 H -0.26 -3.86 7.11 56.52 0.40 -3.46 16 20 H -0.26 -3.94 7.11 56.52 0.40 -3.54 16 21 C -0.30 -5.92 5.88 -104.94 -0.62 -6.54 16 22 C 0.32 6.78 13.98 -22.45 -0.31 6.46 16 23 N -0.53 -11.59 18.54 41.86 0.78 -10.82 16 24 C 0.31 6.47 14.81 -22.55 -0.33 6.13 16 25 N -0.52 -11.78 18.52 41.75 0.77 -11.01 16 26 N -0.56 -10.12 10.42 -11.42 -0.12 -10.24 16 27 C 0.32 5.50 8.44 -155.86 -1.32 4.19 16 28 N -0.55 -8.15 6.23 -9.95 -0.06 -8.21 16 29 H 0.43 5.38 8.96 -40.82 -0.37 5.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.16 2.42 6.19 -52.49 -0.32 2.10 16 35 H 0.41 7.39 8.94 -40.82 -0.36 7.03 16 36 H 0.30 5.04 8.29 -40.82 -0.34 4.70 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -25.53 348.30 -6.48 -32.01 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -2.26 Total: 11.74 kcal Atomic # 6 Polarization: 29.53 SS G_CDS: -5.55 Total: 23.98 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: 1.86 Total: -69.82 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.75 Total: -11.65 kcal Atomic # 14 Polarization: 13.52 SS G_CDS: -5.03 Total: 8.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -25.53 -6.48 -32.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.727 kcal (2) G-P(sol) polarization free energy of solvation -25.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds