Wall clock time and date at job start Tue Mar 31 2020 20:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34770 * 116.99588 * 2 1 4 4 O 1.21480 * 120.00183 * 359.97438 * 3 2 1 5 5 C 1.47630 * 119.99457 * 179.97438 * 3 2 1 6 6 N 1.30985 * 125.18333 * 0.02562 * 5 3 2 7 7 C 1.34224 * 109.66345 * 179.97438 * 6 5 3 8 8 C 1.40561 * 133.52255 * 180.02562 * 7 6 5 9 9 C 1.36619 * 118.36524 * 180.25028 * 8 7 6 10 10 C 1.39721 * 119.70919 * 359.47020 * 9 8 7 11 11 N 1.38873 * 119.37279 * 180.27642 * 10 9 8 12 12 C 1.38398 * 120.00035 * 6.50092 * 11 10 9 13 13 C 1.38967 * 119.99769 * 61.70252 * 12 11 10 14 14 H 1.07994 * 119.99810 * 202.20888 * 13 12 11 15 15 C 1.40863 * 119.99599 * 22.21146 * 13 12 11 16 16 N 1.30320 * 120.00318 * 9.77465 * 15 13 12 17 17 Si 1.86798 * 119.99352 * 189.77155 * 15 13 12 18 18 H 1.48502 * 109.47356 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47090 * 120.00249 * 17 15 13 20 20 H 1.48494 * 109.47351 * 239.99918 * 17 15 13 21 21 C 1.41137 * 120.00141 * 241.70186 * 12 11 10 22 22 C 1.43206 * 119.99973 * 185.44242 * 21 12 11 23 23 N 9.35737 * 174.53517 * 220.32735 * 6 1 2 24 24 C 1.43199 * 120.00212 * 5.44178 * 21 12 11 25 25 N 9.41484 * 155.91226 * 305.96637 * 3 1 2 26 26 N 1.32238 * 121.25651 * 0.56276 * 10 9 8 27 27 C 1.32507 * 121.37551 * 359.70889 * 26 10 9 28 28 N 1.37297 * 133.64149 * 180.02562 * 27 26 10 29 29 H 0.96998 * 126.41938 * 0.02562 * 28 27 26 30 30 H 1.08992 * 109.47621 * 300.00038 * 1 2 3 31 31 H 1.08998 * 109.46954 * 60.00365 * 1 2 3 32 32 H 1.09002 * 109.47191 * 179.97438 * 1 2 3 33 33 H 1.07995 * 120.81560 * 359.97438 * 8 7 6 34 34 H 1.07994 * 120.14069 * 179.74214 * 9 8 7 35 35 H 0.97008 * 119.99970 * 186.50954 * 11 10 9 36 36 H 0.97001 * 119.99608 * 184.98313 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2009 0.0000 4 8 1.4021 2.2196 -0.0005 5 6 3.5380 1.2781 0.0006 6 7 4.3477 0.2485 0.0006 7 6 5.6205 0.6748 0.0006 8 6 6.8620 0.0158 0.0002 9 6 7.9989 0.7733 0.0056 10 6 7.9023 2.1672 0.0002 11 7 9.0625 2.9304 -0.0001 12 6 10.2954 2.3153 -0.1307 13 6 10.5938 1.5943 -1.2806 14 1 11.3630 0.8365 -1.2585 15 6 9.8931 1.8520 -2.4751 16 7 9.1046 2.8863 -2.5579 17 14 10.0942 0.7111 -3.9405 18 1 11.0383 -0.3809 -3.5918 19 1 8.7759 0.1293 -4.2995 20 1 10.6279 1.4776 -5.0950 21 6 11.2496 2.4203 0.9039 22 6 12.5650 1.8843 0.7219 23 7 13.6086 1.4568 0.5804 24 6 10.9024 3.0628 2.1357 25 7 10.6276 3.5730 3.1100 26 7 6.7271 2.7735 0.0009 27 6 5.5953 2.0845 0.0011 28 7 4.2693 2.4404 0.0013 29 1 3.9155 3.3436 0.0010 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 6.9158 -1.0628 0.0002 34 1 8.9680 0.2968 0.0097 35 1 9.0088 3.8946 0.0914 36 1 8.5671 3.0239 -3.3536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:34 Heat of formation + Delta-G solvation = 61.001706 kcal Electronic energy + Delta-G solvation = -27271.345427 eV Core-core repulsion = 23142.735017 eV Total energy + Delta-G solvation = -4128.610409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.49077 -41.45889 -40.39767 -38.28398 -37.70503 -36.86663 -36.52085 -35.04160 -34.76517 -32.59030 -32.01075 -30.30180 -28.82020 -28.41342 -25.83630 -24.48041 -23.49087 -22.73471 -22.05777 -20.86080 -19.92512 -19.10332 -18.81368 -18.42947 -18.12391 -17.79043 -17.64506 -17.41603 -16.60169 -16.45806 -15.80952 -15.20793 -14.88043 -14.64355 -14.53527 -14.35020 -14.12470 -14.02450 -13.94317 -13.86536 -13.43203 -13.39775 -13.20796 -13.09107 -13.04391 -12.71091 -12.62006 -12.32128 -12.26321 -12.13872 -11.99326 -11.90178 -11.54981 -11.07149 -10.29244 -9.98411 -9.81987 -9.23005 -8.41022 -7.15314 -0.60190 0.33549 0.53649 0.72037 0.84953 1.41442 1.53723 1.59741 1.81193 1.96019 2.07255 2.11030 2.27617 2.33530 2.58804 2.70427 2.90297 2.91107 3.40661 3.45697 3.79594 3.85759 3.90855 4.02907 4.27105 4.36427 4.51272 4.63655 4.67246 4.73786 4.75218 4.99767 5.04392 5.04601 5.38326 5.43846 5.65856 5.86603 6.01867 6.13610 6.20646 6.51177 6.55437 6.65791 7.14096 7.24886 7.37666 7.68708 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.003268 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.462252 B = 8565.183536 C = 9692.440600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.335 6.335 3 C 0.571 3.429 4 O -0.514 6.514 5 C 0.201 3.799 6 N -0.400 5.400 7 C -0.079 4.079 8 C 0.027 3.973 9 C -0.215 4.215 10 C 0.487 3.513 11 N -0.627 5.627 12 C 0.373 3.627 13 C -0.361 4.361 14 H 0.119 0.881 15 C 0.048 3.952 16 N -0.721 5.721 17 Si 0.973 3.027 18 H -0.243 1.243 19 H -0.258 1.258 20 H -0.265 1.265 21 C -0.311 4.311 22 C 0.332 3.668 23 N -0.551 5.551 24 C 0.316 3.684 25 N -0.557 5.557 26 N -0.579 5.579 27 C 0.303 3.697 28 N -0.547 5.547 29 H 0.440 0.560 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.407 0.593 36 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.213 -6.646 -6.114 18.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.248 6.248 3 C 0.414 3.586 4 O -0.401 6.401 5 C -0.061 4.061 6 N -0.124 5.124 7 C -0.205 4.205 8 C 0.001 3.999 9 C -0.240 4.240 10 C 0.240 3.760 11 N -0.250 5.250 12 C 0.270 3.730 13 C -0.388 4.388 14 H 0.137 0.863 15 C -0.183 4.183 16 N -0.339 5.339 17 Si 0.792 3.208 18 H -0.165 1.165 19 H -0.183 1.183 20 H -0.189 1.189 21 C -0.330 4.330 22 C 0.025 3.975 23 N -0.234 5.234 24 C 0.009 3.991 25 N -0.240 5.240 26 N -0.305 5.305 27 C 0.064 3.936 28 N -0.166 5.166 29 H 0.282 0.718 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.157 0.843 33 H 0.193 0.807 34 H 0.184 0.816 35 H 0.245 0.755 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.682 -6.124 -4.979 17.556 hybrid contribution -0.318 1.176 -0.788 1.451 sum -15.999 -4.948 -5.768 17.712 Atomic orbital electron populations 1.23820 0.72620 1.06627 1.03430 1.86642 1.26055 1.29307 1.82813 1.18830 0.84421 0.82637 0.72752 1.90899 1.65718 1.36471 1.47059 1.20965 0.91698 0.81409 1.12027 1.69876 1.00141 1.28862 1.13504 1.19660 0.93091 0.91652 1.16129 1.20651 0.86738 1.01824 0.90661 1.21564 1.01414 0.92184 1.08813 1.17874 0.84144 0.88160 0.85804 1.41298 1.01200 1.09148 1.73342 1.16656 0.80890 0.85870 0.89631 1.20618 1.13237 1.13524 0.91433 0.86284 1.27043 0.92390 0.95921 1.02985 1.69488 1.12570 1.20843 1.31000 0.85168 0.80517 0.79008 0.76126 1.16499 1.18261 1.18940 1.12881 0.90852 1.35350 0.93905 1.24749 0.91101 0.90331 0.91363 1.81105 1.13085 1.18454 1.10761 1.25265 0.91725 0.90515 0.91557 1.80983 1.10541 1.18972 1.13503 1.65605 0.95280 1.40341 1.29315 1.18523 0.85028 0.91142 0.98877 1.42077 1.02967 1.10055 1.61527 0.71779 0.90961 0.90930 0.84267 0.80656 0.81634 0.75549 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.52 16 2 O -0.33 -7.07 10.56 -56.81 -0.60 -7.66 16 3 C 0.57 14.30 7.97 70.30 0.56 14.86 16 4 O -0.51 -13.62 16.87 19.90 0.34 -13.29 16 5 C 0.20 5.76 7.92 136.31 1.08 6.84 16 6 N -0.40 -12.39 11.21 -181.50 -2.04 -14.42 16 7 C -0.08 -2.52 7.22 40.02 0.29 -2.23 16 8 C 0.03 0.77 10.17 22.46 0.23 1.00 16 9 C -0.21 -6.65 8.64 22.25 0.19 -6.46 16 10 C 0.49 17.00 6.35 133.30 0.85 17.85 16 11 N -0.63 -22.42 3.26 -184.56 -0.60 -23.03 16 12 C 0.37 13.62 4.85 38.99 0.19 13.80 16 13 C -0.36 -12.47 6.82 23.09 0.16 -12.31 16 14 H 0.12 4.07 7.16 -2.91 -0.02 4.05 16 15 C 0.05 1.56 4.93 85.56 0.42 1.98 16 16 N -0.72 -24.64 11.21 21.98 0.25 -24.39 16 17 Si 0.97 25.82 29.58 68.60 2.03 27.85 16 18 H -0.24 -6.37 7.11 99.48 0.71 -5.66 16 19 H -0.26 -6.83 7.11 99.48 0.71 -6.13 16 20 H -0.26 -7.17 7.11 99.48 0.71 -6.46 16 21 C -0.31 -12.33 5.88 -20.07 -0.12 -12.45 16 22 C 0.33 13.84 13.98 88.33 1.23 15.08 16 23 N -0.55 -24.21 18.54 19.01 0.35 -23.86 16 24 C 0.32 13.49 14.81 88.36 1.31 14.80 16 25 N -0.56 -25.39 18.52 18.97 0.35 -25.04 16 26 N -0.58 -20.66 10.42 -190.04 -1.98 -22.64 16 27 C 0.30 10.12 8.44 134.06 1.13 11.25 16 28 N -0.55 -15.67 6.23 -185.39 -1.16 -16.82 16 29 H 0.44 10.70 8.96 -92.71 -0.83 9.87 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.17 4.83 6.19 -2.91 -0.02 4.81 16 35 H 0.41 14.87 8.94 -92.70 -0.83 14.04 16 36 H 0.31 9.84 8.29 -92.71 -0.77 9.07 16 Total: -1.00 -53.43 348.30 5.23 -48.19 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: -0.43 Total: 29.56 kcal Atomic # 6 Polarization: 56.82 SS G_CDS: 8.72 Total: 65.54 kcal Atomic # 7 Polarization: -145.37 SS G_CDS: -4.82 Total: -150.19 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.26 Total: -20.95 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: 2.03 Total: 27.85 kcal Total: -53.43 5.23 -48.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.193 kcal (2) G-P(sol) polarization free energy of solvation -53.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds