Wall clock time and date at job start Tue Mar 31 2020 20:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34835 * 117.00059 * 2 1 4 4 O 1.21592 * 119.99842 * 0.02562 * 3 2 1 5 5 C 1.46757 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.36589 * 126.78460 * 0.02562 * 5 3 2 7 7 N 1.35357 * 109.76243 * 179.97438 * 6 5 3 8 8 H 0.97003 * 124.75077 * 179.73353 * 7 6 5 9 9 C 1.37823 * 110.48540 * 359.97438 * 7 6 5 10 10 N 1.32764 * 133.02302 * 179.97438 * 9 7 6 11 11 C 1.31811 * 120.03690 * 180.02562 * 10 9 7 12 12 C 1.39531 * 120.50879 * 0.02562 * 11 10 9 13 13 N 1.39270 * 119.95290 * 179.97438 * 12 11 10 14 14 C 1.38362 * 119.99876 * 356.82651 * 13 12 11 15 15 C 1.38978 * 120.00196 * 298.33276 * 14 13 12 16 16 H 1.07991 * 119.99955 * 154.66615 * 15 14 13 17 17 C 1.40845 * 119.99896 * 334.66269 * 15 14 13 18 18 N 1.30333 * 119.99948 * 163.59390 * 17 15 14 19 19 Si 1.86806 * 119.99895 * 343.59612 * 17 15 14 20 20 H 1.48499 * 109.46958 * 88.26682 * 19 17 15 21 21 H 1.48503 * 109.46800 * 208.26425 * 19 17 15 22 22 H 1.48500 * 109.46859 * 328.26168 * 19 17 15 23 23 C 1.41151 * 119.99635 * 118.32901 * 14 13 12 24 24 C 1.43196 * 119.99881 * 184.58023 * 23 14 13 25 25 N 9.85638 * 168.62858 * 29.21591 * 4 1 2 26 26 C 1.43203 * 120.00245 * 4.58829 * 23 14 13 27 27 N 8.96040 * 108.71753 * 339.66632 * 2 1 3 28 28 N 1.32504 * 120.09555 * 359.95887 * 12 11 10 29 29 C 1.32815 * 119.60424 * 0.04465 * 28 12 11 30 30 H 1.08995 * 109.47361 * 299.99930 * 1 2 3 31 31 H 1.09002 * 109.47124 * 60.00065 * 1 2 3 32 32 H 1.09004 * 109.46905 * 179.97438 * 1 2 3 33 33 H 1.08002 * 125.11863 * 359.97438 * 6 5 3 34 34 H 1.08002 * 119.74602 * 180.02562 * 11 10 9 35 35 H 0.97005 * 120.00227 * 176.82979 * 13 12 11 36 36 H 0.97002 * 119.99912 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2211 0.0005 5 6 3.5297 1.2781 -0.0006 6 6 4.4037 0.2285 -0.0016 7 7 5.6755 0.6918 -0.0024 8 1 6.4679 0.1323 0.0005 9 6 5.6867 2.0700 -0.0025 10 7 6.6646 2.9680 -0.0027 11 6 6.3789 4.2547 -0.0022 12 6 5.0518 4.6856 -0.0010 13 7 4.7631 6.0481 0.0001 14 6 5.7901 6.9728 0.0662 15 6 6.6309 6.9997 1.1724 16 1 7.6323 7.3933 1.0801 17 6 6.1770 6.5135 2.4139 18 7 7.0323 6.2377 3.3579 19 14 4.3491 6.2638 2.7074 20 1 3.9593 4.8994 2.2697 21 1 4.0539 6.4228 4.1541 22 1 3.5813 7.2709 1.9319 23 6 5.9840 7.8889 -0.9901 24 6 7.1046 8.7801 -0.9682 25 7 7.9937 9.4874 -0.9465 26 6 5.0599 7.9271 -2.0834 27 7 4.3274 7.9577 -2.9489 28 7 4.0658 3.8004 -0.0011 29 6 4.3490 2.5028 -0.0015 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.1224 -0.8143 -0.0018 34 1 7.1781 4.9811 -0.0028 35 1 3.8419 6.3487 -0.0455 36 1 6.7197 5.9025 4.2128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169083189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:30 Heat of formation + Delta-G solvation = 75.209462 kcal Electronic energy + Delta-G solvation = -27815.791260 eV Core-core repulsion = 23687.796945 eV Total energy + Delta-G solvation = -4127.994315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.99996 -40.04478 -39.26233 -37.28097 -36.23341 -35.37429 -34.85167 -34.38341 -33.73794 -31.29338 -30.50236 -28.53528 -27.70852 -27.43114 -24.48947 -23.63126 -23.14852 -21.38036 -20.12713 -19.30974 -19.05894 -17.63753 -17.43355 -17.20315 -16.71061 -16.46281 -16.30444 -16.10555 -15.53752 -15.41538 -15.18415 -13.83858 -13.64753 -13.55681 -13.42193 -13.21543 -13.17483 -12.92858 -12.81898 -12.54049 -12.14336 -11.95061 -11.78036 -11.66791 -11.61750 -11.39050 -11.27531 -11.09157 -11.05524 -10.79947 -10.64398 -10.47402 -10.20588 -9.65827 -8.87149 -8.56030 -8.45373 -7.91238 -7.36717 -5.56043 0.75681 1.21483 1.80359 1.92845 2.43335 2.67581 2.74372 2.79598 2.85780 3.13202 3.24005 3.42667 3.77434 3.97547 3.99955 4.11040 4.17777 4.26288 4.44141 4.49649 4.83595 4.97400 5.01000 5.03695 5.08985 5.16483 5.32155 5.40810 5.59819 5.78387 5.98631 6.04397 6.28100 6.39071 6.50826 6.80677 6.95625 7.03573 7.32370 7.45191 7.59673 7.74935 7.88055 7.92989 8.29255 8.83979 9.01848 9.03468 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.003944 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.270124 B = 7098.464339 C = 7411.638423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.534 3.466 4 O -0.491 6.491 5 C -0.219 4.219 6 C 0.169 3.831 7 N -0.552 5.552 8 H 0.427 0.573 9 C 0.167 3.833 10 N -0.411 5.411 11 C 0.074 3.926 12 C 0.367 3.633 13 N -0.660 5.660 14 C 0.333 3.667 15 C -0.356 4.356 16 H 0.129 0.871 17 C 0.075 3.925 18 N -0.716 5.716 19 Si 0.909 3.091 20 H -0.243 1.243 21 H -0.281 1.281 22 H -0.245 1.245 23 C -0.290 4.290 24 C 0.322 3.678 25 N -0.520 5.520 26 C 0.305 3.695 27 N -0.522 5.522 28 N -0.460 5.460 29 C 0.146 3.854 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.200 0.800 34 H 0.194 0.806 35 H 0.411 0.589 36 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.796 -19.109 3.199 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.284 6.284 3 C 0.378 3.622 4 O -0.377 6.377 5 C -0.231 4.231 6 C 0.031 3.969 7 N -0.156 5.156 8 H 0.266 0.734 9 C -0.066 4.066 10 N -0.128 5.128 11 C -0.101 4.101 12 C 0.124 3.876 13 N -0.293 5.293 14 C 0.230 3.770 15 C -0.383 4.383 16 H 0.147 0.853 17 C -0.158 4.158 18 N -0.333 5.333 19 Si 0.733 3.267 20 H -0.167 1.167 21 H -0.208 1.208 22 H -0.169 1.169 23 C -0.308 4.308 24 C 0.014 3.986 25 N -0.202 5.202 26 C -0.003 4.003 27 N -0.204 5.204 28 N -0.182 5.182 29 C 0.008 3.992 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.217 0.783 34 H 0.210 0.790 35 H 0.251 0.749 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.414 -17.819 2.157 18.747 hybrid contribution -0.963 -0.464 0.718 1.288 sum -6.377 -18.283 2.875 19.575 Atomic orbital electron populations 1.23192 0.76312 1.03245 1.02651 1.86509 1.23284 1.33085 1.85479 1.19853 0.87465 0.81382 0.73494 1.90921 1.66032 1.35643 1.45112 1.18631 0.89318 0.90855 1.24250 1.22332 0.81525 0.99314 0.93718 1.41108 1.08276 1.04144 1.62084 0.73422 1.18890 0.91872 0.85461 1.10363 1.67238 1.33779 1.00862 1.10883 1.23489 0.95968 0.90873 0.99794 1.18938 0.90154 0.85498 0.93037 1.41865 1.09974 1.00824 1.76611 1.16814 0.83226 0.85546 0.91380 1.20178 1.02234 1.25446 0.90414 0.85297 1.26700 1.02835 0.90864 0.95390 1.69397 1.39051 1.19876 1.04950 0.86204 0.79085 0.82843 0.78588 1.16683 1.20786 1.16874 1.12715 1.02606 1.14662 1.00781 1.24565 0.91243 0.90940 0.91871 1.81105 1.13999 1.14397 1.10710 1.25070 0.91957 0.91780 0.91470 1.81027 1.13828 1.12801 1.12751 1.67217 1.33876 0.99932 1.17226 1.19496 0.90362 0.89602 0.99732 0.91998 0.91967 0.88304 0.78310 0.78960 0.74933 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.57 101.05 1.07 1.40 16 2 O -0.37 -4.03 10.40 -40.86 -0.42 -4.45 16 3 C 0.53 7.86 7.94 34.17 0.27 8.13 16 4 O -0.49 -9.13 16.76 -19.34 -0.32 -9.45 16 5 C -0.22 -3.05 6.27 -103.35 -0.65 -3.70 16 6 C 0.17 1.48 11.63 -16.59 -0.19 1.29 16 7 N -0.55 -5.36 5.97 -11.89 -0.07 -5.43 16 8 H 0.43 2.57 8.96 -40.82 -0.37 2.20 16 9 C 0.17 2.55 8.40 -155.29 -1.30 1.25 16 10 N -0.41 -6.92 10.51 -11.93 -0.13 -7.05 16 11 C 0.07 1.33 9.90 -17.08 -0.17 1.16 16 12 C 0.37 6.95 5.30 -154.52 -0.82 6.13 16 13 N -0.66 -12.48 2.26 -9.58 -0.02 -12.50 16 14 C 0.33 6.45 4.47 -83.54 -0.37 6.07 16 15 C -0.36 -7.04 7.17 -38.32 -0.27 -7.32 16 16 H 0.13 2.73 7.29 -52.49 -0.38 2.35 16 17 C 0.08 1.47 5.14 -17.20 -0.09 1.38 16 18 N -0.72 -14.19 13.90 55.60 0.77 -13.42 16 19 Si 0.91 16.68 24.43 -169.99 -4.15 12.53 16 20 H -0.24 -4.73 5.83 56.52 0.33 -4.40 16 21 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.25 -4.47 6.84 56.52 0.39 -4.08 16 23 C -0.29 -5.97 5.88 -104.94 -0.62 -6.59 16 24 C 0.32 7.04 13.95 -22.46 -0.31 6.73 16 25 N -0.52 -11.99 18.54 41.85 0.78 -11.21 16 26 C 0.31 6.63 14.81 -22.53 -0.33 6.30 16 27 N -0.52 -12.02 18.53 41.77 0.77 -11.24 16 28 N -0.46 -9.05 10.00 -8.70 -0.09 -9.14 16 29 C 0.15 2.53 7.34 -82.85 -0.61 1.93 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.19 3.40 6.04 -52.49 -0.32 3.08 16 35 H 0.41 7.67 7.99 -40.82 -0.33 7.35 16 36 H 0.31 5.50 8.29 -40.82 -0.34 5.16 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -30.07 340.89 -4.45 -34.53 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -2.30 Total: 7.55 kcal Atomic # 6 Polarization: 28.56 SS G_CDS: -4.41 Total: 24.16 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: 2.02 Total: -70.00 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.75 Total: -13.91 kcal Atomic # 14 Polarization: 16.68 SS G_CDS: -4.15 Total: 12.53 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.07 -4.45 -34.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.738 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds