Wall clock time and date at job start Tue Mar 31 2020 20:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34835 * 117.00059 * 2 1 4 4 O 1.21592 * 119.99842 * 0.02562 * 3 2 1 5 5 C 1.46757 * 119.99815 * 180.02562 * 3 2 1 6 6 C 1.36589 * 126.78460 * 0.02562 * 5 3 2 7 7 N 1.35357 * 109.76243 * 179.97438 * 6 5 3 8 8 H 0.97003 * 124.75077 * 179.73353 * 7 6 5 9 9 C 1.37823 * 110.48540 * 359.97438 * 7 6 5 10 10 N 1.32764 * 133.02302 * 179.97438 * 9 7 6 11 11 C 1.31811 * 120.03690 * 180.02562 * 10 9 7 12 12 C 1.39531 * 120.50879 * 0.02562 * 11 10 9 13 13 N 1.39270 * 119.95290 * 179.97438 * 12 11 10 14 14 C 1.38362 * 119.99876 * 356.82651 * 13 12 11 15 15 C 1.38978 * 120.00196 * 298.33276 * 14 13 12 16 16 H 1.07991 * 119.99955 * 154.66615 * 15 14 13 17 17 C 1.40845 * 119.99896 * 334.66269 * 15 14 13 18 18 N 1.30333 * 119.99948 * 163.59390 * 17 15 14 19 19 Si 1.86806 * 119.99895 * 343.59612 * 17 15 14 20 20 H 1.48499 * 109.46958 * 88.26682 * 19 17 15 21 21 H 1.48503 * 109.46800 * 208.26425 * 19 17 15 22 22 H 1.48500 * 109.46859 * 328.26168 * 19 17 15 23 23 C 1.41151 * 119.99635 * 118.32901 * 14 13 12 24 24 C 1.43196 * 119.99881 * 184.58023 * 23 14 13 25 25 N 9.85638 * 168.62858 * 29.21591 * 4 1 2 26 26 C 1.43203 * 120.00245 * 4.58829 * 23 14 13 27 27 N 8.96040 * 108.71753 * 339.66632 * 2 1 3 28 28 N 1.32504 * 120.09555 * 359.95887 * 12 11 10 29 29 C 1.32815 * 119.60424 * 0.04465 * 28 12 11 30 30 H 1.08995 * 109.47361 * 299.99930 * 1 2 3 31 31 H 1.09002 * 109.47124 * 60.00065 * 1 2 3 32 32 H 1.09004 * 109.46905 * 179.97438 * 1 2 3 33 33 H 1.08002 * 125.11863 * 359.97438 * 6 5 3 34 34 H 1.08002 * 119.74602 * 180.02562 * 11 10 9 35 35 H 0.97005 * 120.00227 * 176.82979 * 13 12 11 36 36 H 0.97002 * 119.99912 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4019 2.2211 0.0005 5 6 3.5297 1.2781 -0.0006 6 6 4.4037 0.2285 -0.0016 7 7 5.6755 0.6918 -0.0024 8 1 6.4679 0.1323 0.0005 9 6 5.6867 2.0700 -0.0025 10 7 6.6646 2.9680 -0.0027 11 6 6.3789 4.2547 -0.0022 12 6 5.0518 4.6856 -0.0010 13 7 4.7631 6.0481 0.0001 14 6 5.7901 6.9728 0.0662 15 6 6.6309 6.9997 1.1724 16 1 7.6323 7.3933 1.0801 17 6 6.1770 6.5135 2.4139 18 7 7.0323 6.2377 3.3579 19 14 4.3491 6.2638 2.7074 20 1 3.9593 4.8994 2.2697 21 1 4.0539 6.4228 4.1541 22 1 3.5813 7.2709 1.9319 23 6 5.9840 7.8889 -0.9901 24 6 7.1046 8.7801 -0.9682 25 7 7.9937 9.4874 -0.9465 26 6 5.0599 7.9271 -2.0834 27 7 4.3274 7.9577 -2.9489 28 7 4.0658 3.8004 -0.0011 29 6 4.3490 2.5028 -0.0015 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.1224 -0.8143 -0.0018 34 1 7.1781 4.9811 -0.0028 35 1 3.8419 6.3487 -0.0455 36 1 6.7197 5.9025 4.2128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169083189.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:29 Heat of formation + Delta-G solvation = 54.881696 kcal Electronic energy + Delta-G solvation = -27816.672738 eV Core-core repulsion = 23687.796945 eV Total energy + Delta-G solvation = -4128.875793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.15044 -41.12417 -40.49016 -38.70830 -37.26116 -37.05415 -36.61469 -35.83848 -35.16218 -32.63504 -31.69860 -29.83055 -29.11299 -28.45021 -25.71365 -24.81981 -24.26318 -22.88297 -21.28290 -20.72542 -20.28555 -19.20560 -18.64641 -18.45777 -18.00606 -17.83129 -17.32422 -17.09178 -16.90803 -16.58681 -16.37680 -15.15262 -14.97419 -14.95053 -14.58421 -14.54042 -14.44823 -14.26551 -14.16104 -14.09412 -13.55363 -13.45806 -13.40675 -13.14771 -12.88992 -12.84042 -12.82380 -12.62564 -12.61953 -12.16262 -11.70534 -11.69297 -11.60304 -11.11034 -10.23385 -9.95576 -9.58568 -9.48452 -8.77049 -7.23265 -0.31837 -0.12015 0.32413 0.73284 1.22571 1.29709 1.34865 1.46578 1.72753 1.86148 1.93182 2.04132 2.08049 2.20800 2.45292 2.48132 2.77531 3.10346 3.21719 3.31922 3.45058 3.66875 3.84744 3.87153 4.28118 4.36827 4.41271 4.41380 4.48970 4.62638 4.69266 4.81223 4.85926 5.21831 5.41786 5.43772 5.48777 5.68995 5.92384 5.99416 6.23407 6.26705 6.55816 6.90689 6.91720 7.10875 7.29101 7.48452 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012804 B = 0.003944 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.270124 B = 7098.464339 C = 7411.638423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.350 6.350 3 C 0.537 3.463 4 O -0.546 6.546 5 C -0.270 4.270 6 C 0.240 3.760 7 N -0.529 5.529 8 H 0.450 0.550 9 C 0.165 3.835 10 N -0.412 5.412 11 C 0.053 3.947 12 C 0.354 3.646 13 N -0.665 5.665 14 C 0.347 3.653 15 C -0.348 4.348 16 H 0.116 0.884 17 C 0.068 3.932 18 N -0.726 5.726 19 Si 0.942 3.058 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.247 1.247 23 C -0.296 4.296 24 C 0.330 3.670 25 N -0.544 5.544 26 C 0.315 3.685 27 N -0.548 5.548 28 N -0.489 5.489 29 C 0.119 3.881 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.142 0.858 33 H 0.268 0.732 34 H 0.188 0.812 35 H 0.409 0.591 36 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.925 -23.040 3.914 24.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.267 6.267 3 C 0.384 3.616 4 O -0.437 6.437 5 C -0.281 4.281 6 C 0.100 3.900 7 N -0.136 5.136 8 H 0.294 0.706 9 C -0.070 4.070 10 N -0.128 5.128 11 C -0.120 4.120 12 C 0.112 3.888 13 N -0.298 5.298 14 C 0.245 3.755 15 C -0.375 4.375 16 H 0.134 0.866 17 C -0.165 4.165 18 N -0.343 5.343 19 Si 0.765 3.235 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.170 1.170 23 C -0.315 4.315 24 C 0.023 3.977 25 N -0.227 5.227 26 C 0.008 3.992 27 N -0.231 5.231 28 N -0.212 5.212 29 C -0.019 4.019 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.160 0.840 33 H 0.283 0.717 34 H 0.205 0.795 35 H 0.249 0.751 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.489 -21.770 2.880 22.636 hybrid contribution -0.956 0.410 0.563 1.183 sum -6.444 -21.360 3.444 22.575 Atomic orbital electron populations 1.23512 0.74772 1.05788 1.01997 1.86488 1.24659 1.30803 1.84714 1.20037 0.87806 0.81579 0.72165 1.90897 1.67180 1.37545 1.48040 1.18786 0.89769 0.90941 1.28579 1.23323 0.79506 1.00615 0.86521 1.41212 1.09910 1.01992 1.60483 0.70583 1.19098 0.90809 0.87573 1.09542 1.67227 1.34176 1.00729 1.10649 1.23310 0.95379 0.91520 1.01806 1.18940 0.90489 0.85190 0.94185 1.41780 1.09547 1.01052 1.77387 1.16605 0.83178 0.85136 0.90628 1.20112 1.01648 1.24895 0.90834 0.86634 1.26892 1.03925 0.90600 0.95067 1.69366 1.39848 1.19547 1.05547 0.85709 0.77397 0.81751 0.78596 1.18394 1.20040 1.17039 1.12689 1.02447 1.15293 1.01057 1.24681 0.91120 0.90637 0.91290 1.81095 1.14795 1.15308 1.11507 1.25151 0.91646 0.91128 0.91230 1.81018 1.14684 1.13810 1.13552 1.67170 1.34727 1.01435 1.17841 1.20229 0.92504 0.89729 0.99475 0.92704 0.92768 0.84015 0.71684 0.79531 0.75148 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.67 16 2 O -0.35 -6.66 10.40 -57.48 -0.60 -7.25 16 3 C 0.54 15.11 7.94 70.05 0.56 15.67 16 4 O -0.55 -20.71 16.76 19.53 0.33 -20.39 16 5 C -0.27 -6.89 6.27 -19.04 -0.12 -7.01 16 6 C 0.24 2.88 11.63 83.76 0.97 3.86 16 7 N -0.53 -7.86 5.97 -191.54 -1.14 -9.01 16 8 H 0.45 2.94 8.96 -92.71 -0.83 2.11 16 9 C 0.17 4.72 8.40 133.71 1.12 5.84 16 10 N -0.41 -13.54 10.51 -191.67 -2.01 -15.56 16 11 C 0.05 1.93 9.90 85.01 0.84 2.77 16 12 C 0.35 13.73 5.30 133.04 0.71 14.44 16 13 N -0.66 -25.89 2.26 -184.23 -0.42 -26.30 16 14 C 0.35 13.77 4.47 39.00 0.17 13.94 16 15 C -0.35 -13.98 7.17 23.09 0.17 -13.82 16 16 H 0.12 4.99 7.29 -2.92 -0.02 4.97 16 17 C 0.07 2.65 5.14 85.55 0.44 3.09 16 18 N -0.73 -28.36 13.90 21.98 0.31 -28.05 16 19 Si 0.94 34.37 24.43 68.60 1.68 36.04 16 20 H -0.26 -10.24 5.83 99.48 0.58 -9.66 16 21 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 22 H -0.25 -9.00 6.84 99.48 0.68 -8.32 16 23 C -0.30 -12.48 5.88 -20.07 -0.12 -12.60 16 24 C 0.33 14.67 13.95 88.33 1.23 15.90 16 25 N -0.54 -25.41 18.54 19.01 0.35 -25.06 16 26 C 0.32 14.00 14.81 88.35 1.31 15.31 16 27 N -0.55 -25.69 18.53 18.98 0.35 -25.34 16 28 N -0.49 -19.67 10.00 -181.44 -1.81 -21.49 16 29 C 0.12 4.05 7.34 41.97 0.31 4.36 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.27 -0.38 8.06 -2.91 -0.02 -0.41 16 34 H 0.19 6.83 6.04 -2.91 -0.02 6.82 16 35 H 0.41 15.89 7.99 -92.70 -0.74 15.15 16 36 H 0.32 11.10 8.29 -92.71 -0.77 10.33 16 Total: -1.00 -69.63 340.89 5.32 -64.31 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.49 Total: 14.66 kcal Atomic # 6 Polarization: 54.65 SS G_CDS: 8.79 Total: 63.44 kcal Atomic # 7 Polarization: -146.43 SS G_CDS: -4.38 Total: -150.81 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.27 Total: -27.64 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 1.68 Total: 36.04 kcal Total: -69.63 5.32 -64.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169083189.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.190 kcal (2) G-P(sol) polarization free energy of solvation -69.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds