Wall clock time and date at job start Tue Mar 31 2020 21:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00251 * 2 1 4 4 H 1.48495 * 109.47297 * 270.00134 * 3 2 1 5 5 H 1.48505 * 109.46808 * 30.00126 * 3 2 1 6 6 H 1.48493 * 109.47047 * 149.99818 * 3 2 1 7 7 C 1.37873 * 119.99377 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99769 * 179.97438 * 7 2 1 9 9 S 1.76203 * 120.00564 * 0.02562 * 7 2 1 10 10 O 1.42092 * 106.40100 * 66.46068 * 9 7 2 11 11 O 1.42102 * 106.40046 * 293.54191 * 9 7 2 12 12 N 1.65598 * 107.21797 * 180.02562 * 9 7 2 13 13 C 1.46496 * 120.00239 * 64.99841 * 12 9 7 14 14 C 1.53009 * 109.47223 * 164.99874 * 13 12 9 15 15 C 1.50696 * 109.46940 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00369 * 5.45605 * 15 14 13 17 17 N 1.34780 * 119.99864 * 185.44970 * 15 14 13 18 18 C 1.46934 * 120.55492 * 353.89507 * 17 15 14 19 19 C 1.53426 * 107.78382 * 224.72168 * 18 17 15 20 20 C 1.52844 * 108.87423 * 296.80581 * 19 18 17 21 21 C 1.50591 * 110.50973 * 51.40439 * 20 19 18 22 22 C 1.38513 * 118.93802 * 159.42474 * 21 20 19 23 23 C 1.38120 * 120.30166 * 179.57676 * 22 21 20 24 24 C 1.38310 * 120.15501 * 0.28440 * 23 22 21 25 25 C 1.38034 * 119.90551 * 359.53599 * 24 23 22 26 26 C 1.38568 * 121.49777 * 339.17544 * 21 20 19 27 27 H 0.96999 * 119.99841 * 0.02562 * 1 2 3 28 28 H 0.97007 * 120.00111 * 244.99823 * 12 9 7 29 29 H 1.08998 * 109.47191 * 45.00223 * 13 12 9 30 30 H 1.09001 * 109.47028 * 284.99823 * 13 12 9 31 31 H 1.08998 * 109.46752 * 60.00080 * 14 13 12 32 32 H 1.08994 * 109.47087 * 300.00282 * 14 13 12 33 33 H 1.08996 * 109.79871 * 344.29045 * 18 17 15 34 34 H 1.08996 * 109.80028 * 105.09211 * 18 17 15 35 35 H 1.09005 * 109.57591 * 56.62489 * 19 18 17 36 36 H 1.09005 * 109.57245 * 176.86388 * 19 18 17 37 37 H 1.08998 * 109.27149 * 291.13581 * 20 19 18 38 38 H 1.09008 * 109.27069 * 171.66728 * 20 19 18 39 39 H 1.07998 * 119.84826 * 359.54692 * 22 21 20 40 40 H 1.07998 * 119.91923 * 180.02562 * 23 22 21 41 41 H 1.08001 * 120.04376 * 179.78307 * 24 23 22 42 42 H 1.07996 * 119.98267 * 180.26351 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 16 1.1234 -2.7200 -0.0019 10 8 0.4518 -2.7945 -1.2519 11 8 0.4507 -2.7961 1.2475 12 7 2.2481 -3.9354 -0.0016 13 6 3.1383 -4.1094 1.1488 14 6 3.8037 -5.4853 1.0754 15 6 4.7199 -5.6639 2.2585 16 8 4.7557 -4.8217 3.1305 17 7 5.4995 -6.7598 2.3476 18 6 5.3705 -7.8498 1.3708 19 6 5.3764 -9.1750 2.1438 20 6 6.7245 -9.3311 2.8470 21 6 7.0485 -8.0969 3.6467 22 6 7.9739 -8.1874 4.6734 23 6 8.2987 -7.0711 5.4192 24 6 7.6966 -5.8556 5.1488 25 6 6.7762 -5.7562 4.1249 26 6 6.4467 -6.8789 3.3740 27 1 -0.4850 0.8400 -0.0004 28 1 2.3176 -4.5323 -0.7632 29 1 2.5606 -4.0340 2.0700 30 1 3.9044 -3.3342 1.1359 31 1 4.3815 -5.5607 0.1542 32 1 3.0376 -6.2605 1.0883 33 1 4.4337 -7.7460 0.8234 34 1 6.2092 -7.8234 0.6752 35 1 4.5768 -9.1694 2.8846 36 1 5.2261 -10.0028 1.4507 37 1 7.5030 -9.4911 2.1011 38 1 6.6845 -10.1920 3.5146 39 1 8.4433 -9.1351 4.8921 40 1 9.0213 -7.1485 6.2180 41 1 7.9493 -4.9847 5.7354 42 1 6.3085 -4.8067 3.9100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995199.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:34 Heat of formation + Delta-G solvation = -95.680426 kcal Electronic energy + Delta-G solvation = -26777.416668 eV Core-core repulsion = 22848.703555 eV Total energy + Delta-G solvation = -3928.713113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.32061 -38.88369 -36.76387 -35.37281 -34.96166 -33.92444 -33.80673 -33.04240 -31.17191 -30.50492 -29.20530 -26.09830 -26.07175 -24.11946 -23.36193 -22.44744 -20.69033 -19.42973 -18.87301 -17.70354 -17.41027 -16.95327 -16.33406 -16.15741 -16.04689 -15.33878 -15.12048 -14.82811 -14.56197 -14.42025 -14.11062 -13.84389 -13.64622 -13.53361 -13.37833 -13.15861 -12.94774 -12.65616 -12.00379 -11.94812 -11.69678 -11.59879 -11.50989 -11.46263 -11.18451 -11.15597 -11.04722 -10.56583 -10.41567 -10.33452 -10.26364 -10.16200 -9.53521 -9.20940 -9.01411 -8.84523 -8.48971 -8.03236 -6.66635 -5.27927 1.12907 1.27909 2.28669 2.44193 2.59964 3.10259 3.16953 3.24333 3.66628 4.06633 4.16290 4.31121 4.42004 4.52686 4.67884 4.73439 4.82698 4.89606 4.92689 5.02041 5.03723 5.07851 5.13889 5.26804 5.29920 5.46428 5.48142 5.50341 5.61511 5.72708 5.80419 5.97340 6.07042 6.15107 6.24098 6.27606 6.40633 6.48921 6.51041 6.81608 6.99571 7.08079 7.35928 7.85718 7.91726 8.01412 8.93149 10.27663 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.002704 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.334596 B =10353.187482 C =11464.759800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.019 5.019 8 H 0.102 0.898 9 S 2.717 3.283 10 O -1.006 7.006 11 O -1.005 7.005 12 N -1.139 6.139 13 C 0.141 3.859 14 C -0.146 4.146 15 C 0.518 3.482 16 O -0.504 6.504 17 N -0.559 5.559 18 C 0.099 3.901 19 C -0.136 4.136 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.102 4.102 23 C -0.144 4.144 24 C -0.102 4.102 25 C -0.150 4.150 26 C 0.159 3.841 27 H 0.290 0.710 28 H 0.400 0.600 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.642 -19.206 4.623 25.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.153 5.153 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.997 6.997 11 O -0.995 6.995 12 N -0.894 5.894 13 C 0.013 3.987 14 C -0.188 4.188 15 C 0.308 3.692 16 O -0.378 6.378 17 N -0.283 5.283 18 C -0.023 4.023 19 C -0.174 4.174 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.121 4.121 23 C -0.163 4.163 24 C -0.121 4.121 25 C -0.170 4.170 26 C 0.065 3.935 27 H 0.101 0.899 28 H 0.231 0.769 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 15.429 -18.659 5.196 24.763 hybrid contribution 1.171 0.788 -0.331 1.450 sum 16.600 -17.871 4.865 24.872 Atomic orbital electron populations 1.69897 1.06770 1.30689 1.40228 1.24738 0.94455 1.00822 0.88475 0.86167 0.80252 0.80095 0.79077 1.19265 1.19995 1.18621 1.30536 1.06109 1.11857 1.66757 0.87977 1.00366 0.71991 0.73223 0.72804 1.93374 1.73020 1.87654 1.45635 1.93365 1.72765 1.87430 1.45907 1.56034 1.55910 1.51356 1.26060 1.20769 0.93802 0.94065 0.90017 1.21971 0.98913 1.01318 0.96556 1.20898 0.80042 0.80270 0.87955 1.90573 1.65093 1.42178 1.39996 1.45809 1.35210 1.19593 1.27700 1.22053 1.03711 0.85729 0.90828 1.21878 0.98267 0.96971 1.00323 1.20380 0.97141 0.95243 0.98558 1.19442 1.00453 0.93187 0.99357 1.20825 0.97416 0.98663 0.95189 1.21062 1.01311 0.93220 1.00734 1.21135 0.95971 0.97699 0.97277 1.22228 0.98599 1.00025 0.96105 1.17719 0.91352 0.93715 0.90680 0.89926 0.76919 0.89620 0.91343 0.88030 0.87729 0.88429 0.90319 0.90759 0.89522 0.90544 0.90309 0.86063 0.86295 0.85815 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.10 13.19 55.43 0.73 -24.37 16 2 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 3 Si 0.92 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 7 C -1.02 -28.16 9.72 30.60 0.30 -27.86 16 8 H 0.10 2.59 7.81 -52.49 -0.41 2.18 16 9 S 2.72 71.24 5.02 -107.50 -0.54 70.70 16 10 O -1.01 -29.00 18.02 -57.17 -1.03 -30.03 16 11 O -1.00 -29.43 17.49 -57.17 -1.00 -30.43 16 12 N -1.14 -21.44 6.00 -10.61 -0.06 -21.50 16 13 C 0.14 2.39 5.53 -4.04 -0.02 2.37 16 14 C -0.15 -1.72 4.26 -27.88 -0.12 -1.84 16 15 C 0.52 6.94 7.55 -10.99 -0.08 6.86 16 16 O -0.50 -8.51 12.66 5.55 0.07 -8.44 16 17 N -0.56 -6.22 2.97 -112.85 -0.34 -6.55 16 18 C 0.10 0.70 6.17 -3.59 -0.02 0.68 16 19 C -0.14 -0.83 6.11 -26.59 -0.16 -0.99 16 20 C -0.08 -0.51 5.78 -28.02 -0.16 -0.67 16 21 C -0.12 -1.20 5.76 -104.45 -0.60 -1.81 16 22 C -0.10 -0.93 9.66 -39.52 -0.38 -1.32 16 23 C -0.14 -1.39 10.04 -39.60 -0.40 -1.78 16 24 C -0.10 -1.14 10.05 -39.63 -0.40 -1.54 16 25 C -0.15 -2.00 8.87 -39.36 -0.35 -2.35 16 26 C 0.16 1.94 6.31 -83.62 -0.53 1.42 16 27 H 0.29 7.74 8.31 -40.82 -0.34 7.41 16 28 H 0.40 6.11 8.65 -34.47 -0.30 5.81 16 29 H 0.09 1.64 7.65 -51.93 -0.40 1.24 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 0.91 8.06 -51.93 -0.42 0.49 16 32 H 0.10 1.01 7.60 -51.93 -0.39 0.61 16 33 H 0.10 0.52 6.26 -51.93 -0.33 0.20 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.44 8.12 -51.92 -0.42 0.02 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.17 2.54 4.99 -53.56 -0.27 2.28 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -38.04 359.80 -10.24 -48.28 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -5.45 Total: 6.21 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -3.03 Total: -25.19 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.33 Total: -52.42 kcal Atomic # 8 Polarization: -66.93 SS G_CDS: -1.96 Total: -68.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 71.24 SS G_CDS: -0.54 Total: 70.70 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -38.04 -10.24 -48.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995199.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.397 kcal (2) G-P(sol) polarization free energy of solvation -38.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds