Wall clock time and date at job start Tue Mar 31 2020 20:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47182 * 2 1 4 4 N 1.27943 * 120.00071 * 84.99426 * 3 2 1 5 5 Si 1.86802 * 119.99732 * 264.99898 * 3 2 1 6 6 H 1.48500 * 109.47014 * 90.00313 * 5 3 2 7 7 H 1.48507 * 109.46742 * 209.99812 * 5 3 2 8 8 H 1.48501 * 109.47052 * 329.99724 * 5 3 2 9 9 S 1.81399 * 109.47107 * 239.99507 * 2 1 3 10 10 O 1.42098 * 110.54017 * 193.37656 * 9 2 1 11 11 O 1.42107 * 110.53935 * 56.62720 * 9 2 1 12 12 N 1.65597 * 104.45185 * 305.00289 * 9 2 1 13 13 C 1.39422 * 119.99968 * 64.99964 * 12 9 2 14 14 C 1.39138 * 120.55247 * 35.21124 * 13 12 9 15 15 C 1.38586 * 118.46095 * 180.26308 * 14 13 12 16 16 C 1.38393 * 119.48546 * 359.48350 * 15 14 13 17 17 N 1.31692 * 121.08455 * 0.29735 * 16 15 14 18 18 C 1.32804 * 121.66930 * 359.97438 * 17 16 15 19 19 C 1.43203 * 119.79660 * 179.97438 * 18 17 16 20 20 C 5.20480 * 79.72857 * 171.86507 * 2 1 3 21 21 Si 6.54124 * 90.09229 * 163.49863 * 2 1 3 22 22 C 1.86305 * 109.46968 * 208.50521 * 21 20 19 23 23 C 1.86300 * 109.47228 * 328.50397 * 21 20 19 24 24 C 1.86301 * 109.47345 * 88.50691 * 21 20 19 25 25 H 1.09000 * 109.47265 * 299.99942 * 1 2 3 26 26 H 1.09005 * 109.46973 * 60.00108 * 1 2 3 27 27 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46973 * 119.99892 * 2 1 3 29 29 H 0.96999 * 120.00196 * 179.97438 * 4 3 2 30 30 H 0.96999 * 119.99630 * 245.00056 * 12 9 2 31 31 H 1.08003 * 120.76730 * 0.02852 * 14 13 12 32 32 H 1.08002 * 120.26137 * 179.76225 * 15 14 13 33 33 H 1.07995 * 119.45740 * 180.27885 * 16 15 14 34 34 H 1.09003 * 109.47373 * 60.00040 * 22 21 20 35 35 H 1.09003 * 109.46978 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.47206 * 299.99962 * 22 21 20 37 37 H 1.08994 * 109.47199 * 60.00261 * 23 21 20 38 38 H 1.09003 * 109.46914 * 180.02562 * 23 21 20 39 39 H 1.09003 * 109.47078 * 299.99939 * 23 21 20 40 40 H 1.08999 * 109.47494 * 59.99542 * 24 21 20 41 41 H 1.09003 * 109.47381 * 179.97438 * 24 21 20 42 42 H 1.09007 * 109.46789 * 299.99924 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1544 2.0562 1.1038 5 14 2.4766 2.2543 -1.6116 6 1 1.2794 2.9402 -2.1607 7 1 3.5521 3.2504 -1.3737 8 1 2.9517 1.2351 -2.5815 9 16 2.1347 -0.8553 -1.4810 10 8 3.5214 -1.1411 -1.3605 11 8 1.6107 -0.2500 -2.6552 12 7 1.4052 -2.3409 -1.4271 13 6 0.0194 -2.4417 -1.5425 14 6 -0.6863 -1.5744 -2.3707 15 6 -2.0633 -1.7097 -2.4486 16 6 -2.6929 -2.7010 -1.7163 17 7 -2.0056 -3.5146 -0.9418 18 6 -0.6855 -3.4214 -0.8297 19 6 0.0218 -4.3270 0.0248 20 6 0.6019 -5.0699 0.7247 21 14 1.5405 -6.2718 1.8580 22 6 2.7562 -5.3206 2.9012 23 6 0.3301 -7.1551 2.9649 24 6 2.4558 -7.5183 0.8191 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 2.4781 2.9706 1.1038 30 1 1.9421 -3.1410 -1.3152 31 1 -0.1732 -0.8110 -2.9367 32 1 -2.6402 -1.0496 -3.0793 33 1 -3.7655 -2.8089 -1.7809 34 1 2.2207 -4.5912 3.5091 35 1 3.2950 -6.0102 3.5510 36 1 3.4644 -4.8037 2.2535 37 1 -0.3811 -7.7116 2.3546 38 1 0.8686 -7.8443 3.6154 39 1 -0.2054 -6.4258 3.5728 40 1 3.1641 -7.0016 0.1714 41 1 2.9947 -8.2076 1.4692 42 1 1.7446 -8.0749 0.2087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193105701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:38 Heat of formation + Delta-G solvation = 22.016864 kcal Electronic energy + Delta-G solvation = -25373.297935 eV Core-core repulsion = 21799.239268 eV Total energy + Delta-G solvation = -3574.058667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67370 -38.63868 -37.91473 -37.44670 -37.03078 -34.76178 -33.50210 -32.44319 -30.48424 -29.63480 -28.48795 -28.47159 -26.43406 -25.30157 -24.49264 -22.18740 -20.57407 -20.19048 -19.54723 -19.18735 -18.27051 -17.48640 -17.02037 -16.76498 -16.65494 -15.93169 -15.56759 -15.36321 -15.02420 -14.76752 -14.58842 -14.31157 -14.15927 -14.06344 -14.04524 -13.95485 -13.67257 -13.51792 -13.38357 -13.36539 -13.20038 -13.15334 -13.15295 -12.90481 -12.72076 -12.35611 -12.25152 -11.93586 -11.91645 -11.77396 -11.59762 -11.03874 -10.87672 -10.61981 -10.48055 -10.34831 -9.43853 -1.30901 -0.40589 0.03268 0.39208 0.51726 1.01030 1.15276 1.25280 1.38480 1.46917 1.49152 1.63830 2.18680 2.20060 2.27114 2.30459 2.75247 2.82267 2.94455 3.19719 3.45346 3.51548 3.72602 3.84827 3.87086 4.02693 4.17257 4.39368 4.42655 4.44416 4.56562 4.64874 4.65452 4.69148 4.69486 4.71398 4.72190 4.76573 4.82385 5.07500 5.34589 5.39576 5.48468 5.50451 5.59851 6.44254 6.51083 6.78827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.555 4.555 3 C 0.013 3.987 4 N -0.594 5.594 5 Si 0.847 3.153 6 H -0.206 1.206 7 H -0.223 1.223 8 H -0.200 1.200 9 S 2.596 3.404 10 O -0.929 6.929 11 O -0.933 6.933 12 N -1.041 6.041 13 C 0.125 3.875 14 C -0.127 4.127 15 C -0.135 4.135 16 C 0.091 3.909 17 N -0.447 5.447 18 C 0.202 3.798 19 C -0.137 4.137 20 C -0.358 4.358 21 Si 1.141 2.859 22 C -0.454 4.454 23 C -0.452 4.452 24 C -0.453 4.453 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.163 0.837 29 H 0.350 0.650 30 H 0.433 0.567 31 H 0.184 0.816 32 H 0.150 0.850 33 H 0.168 0.832 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -0.072 1.052 1.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.665 4.665 3 C -0.238 4.238 4 N -0.208 5.208 5 Si 0.660 3.340 6 H -0.128 1.128 7 H -0.146 1.146 8 H -0.121 1.121 9 S 2.688 3.312 10 O -0.919 6.919 11 O -0.923 6.923 12 N -0.790 5.790 13 C 0.025 3.975 14 C -0.156 4.156 15 C -0.155 4.155 16 C -0.068 4.068 17 N -0.155 5.155 18 C 0.063 3.937 19 C -0.138 4.138 20 C -0.395 4.395 21 Si 1.326 2.674 22 C -0.562 4.562 23 C -0.560 4.560 24 C -0.561 4.561 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.181 0.819 29 H 0.169 0.831 30 H 0.271 0.729 31 H 0.201 0.799 32 H 0.168 0.832 33 H 0.185 0.815 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.222 0.043 0.990 1.573 hybrid contribution 0.199 0.921 -0.210 0.966 sum -1.023 0.964 0.780 1.607 Atomic orbital electron populations 1.21922 0.87868 1.04385 1.05787 1.29715 1.08120 1.05654 1.23053 1.29177 0.95531 0.95995 1.03122 1.68006 1.08329 1.14014 1.30405 0.87037 0.85171 0.85690 0.76144 1.12752 1.14553 1.12149 1.05994 0.74278 0.73679 0.77234 1.93666 1.28843 1.82186 1.87213 1.93596 1.80050 1.75803 1.42842 1.53199 1.12480 1.26682 1.86654 1.18237 0.82967 0.99034 0.97237 1.22652 0.95625 1.00904 0.96390 1.22269 0.94256 0.99173 0.99846 1.22906 1.00792 0.90788 0.92361 1.67822 1.05784 1.24578 1.17314 1.16690 0.88702 0.93834 0.94485 1.20152 0.98233 0.97454 0.97979 1.36254 1.01275 1.01124 1.00801 0.77144 0.64430 0.62620 0.63159 1.26136 1.11274 1.09159 1.09668 1.26103 1.11491 1.08287 1.10145 1.26121 1.08547 1.11582 1.09866 0.89086 0.90056 0.90371 0.81894 0.83117 0.72916 0.79876 0.83181 0.81503 0.90787 0.90187 0.90736 0.90749 0.90320 0.90806 0.90777 0.90234 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.18 7.68 37.16 0.29 0.46 16 2 C -0.56 0.20 3.33 -27.88 -0.09 0.11 16 3 C 0.01 0.00 4.98 -13.90 -0.07 -0.07 16 4 N -0.59 -0.34 13.82 56.23 0.78 0.44 16 5 Si 0.85 0.27 26.44 -169.99 -4.49 -4.22 16 6 H -0.21 0.04 7.11 56.52 0.40 0.44 16 7 H -0.22 0.03 7.11 56.52 0.40 0.43 16 8 H -0.20 -0.28 5.08 56.52 0.29 0.00 16 9 S 2.60 3.25 3.43 -107.50 -0.37 2.88 16 10 O -0.93 -3.45 18.08 -57.54 -1.04 -4.49 16 11 O -0.93 -1.87 11.05 -57.54 -0.64 -2.51 16 12 N -1.04 -0.38 5.38 32.65 0.18 -0.21 16 13 C 0.12 0.13 3.94 -83.35 -0.33 -0.19 16 14 C -0.13 0.01 7.03 -39.12 -0.28 -0.26 16 15 C -0.14 0.21 10.10 -39.40 -0.40 -0.19 16 16 C 0.09 -0.02 11.17 -17.55 -0.20 -0.22 16 17 N -0.45 -1.27 10.28 -10.97 -0.11 -1.39 16 18 C 0.20 0.55 6.20 -84.79 -0.53 0.02 16 19 C -0.14 -0.39 12.53 -38.84 -0.49 -0.88 16 20 C -0.36 -0.32 12.14 29.55 0.36 0.03 16 21 Si 1.14 -3.45 14.26 -169.99 -2.42 -5.87 16 22 C -0.45 1.17 8.65 101.05 0.87 2.05 16 23 C -0.45 0.98 8.65 101.05 0.87 1.86 16 24 C -0.45 1.13 8.65 101.05 0.87 2.01 16 25 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.08 -0.20 7.39 -51.93 -0.38 -0.59 16 27 H 0.08 -0.08 4.78 -51.93 -0.25 -0.33 16 28 H 0.16 -0.28 8.14 -51.92 -0.42 -0.70 16 29 H 0.35 -0.49 8.23 -40.82 -0.34 -0.83 16 30 H 0.43 -0.39 8.28 -34.46 -0.29 -0.68 16 31 H 0.18 -0.11 5.12 -52.48 -0.27 -0.37 16 32 H 0.15 -0.67 8.06 -52.49 -0.42 -1.09 16 33 H 0.17 -0.51 8.06 -52.49 -0.42 -0.93 16 34 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 35 H 0.08 -0.25 7.96 -51.93 -0.41 -0.67 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 38 H 0.08 -0.23 7.96 -51.93 -0.41 -0.64 16 39 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 40 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 41 H 0.08 -0.25 7.96 -51.93 -0.41 -0.66 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 LS Contribution 364.93 15.07 5.50 5.50 Total: 0.00 -8.15 364.93 -7.57 -15.72 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: -5.84 Total: -10.58 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 0.90 Total: 4.73 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: 0.84 Total: -1.16 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -1.68 Total: -7.00 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: -6.92 Total: -10.09 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -0.37 Total: 2.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -8.15 -7.57 -15.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193105701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.740 kcal (2) G-P(sol) polarization free energy of solvation -8.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds