Wall clock time and date at job start Tue Mar 31 2020 20:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47182 * 2 1 4 4 N 1.27943 * 120.00071 * 84.99426 * 3 2 1 5 5 Si 1.86802 * 119.99732 * 264.99898 * 3 2 1 6 6 H 1.48500 * 109.47014 * 90.00313 * 5 3 2 7 7 H 1.48507 * 109.46742 * 209.99812 * 5 3 2 8 8 H 1.48501 * 109.47052 * 329.99724 * 5 3 2 9 9 S 1.81399 * 109.47107 * 239.99507 * 2 1 3 10 10 O 1.42098 * 110.54017 * 193.37656 * 9 2 1 11 11 O 1.42107 * 110.53935 * 56.62720 * 9 2 1 12 12 N 1.65597 * 104.45185 * 305.00289 * 9 2 1 13 13 C 1.39422 * 119.99968 * 64.99964 * 12 9 2 14 14 C 1.39138 * 120.55247 * 35.21124 * 13 12 9 15 15 C 1.38586 * 118.46095 * 180.26308 * 14 13 12 16 16 C 1.38393 * 119.48546 * 359.48350 * 15 14 13 17 17 N 1.31692 * 121.08455 * 0.29735 * 16 15 14 18 18 C 1.32804 * 121.66930 * 359.97438 * 17 16 15 19 19 C 1.43203 * 119.79660 * 179.97438 * 18 17 16 20 20 C 5.20480 * 79.72857 * 171.86507 * 2 1 3 21 21 Si 6.54124 * 90.09229 * 163.49863 * 2 1 3 22 22 C 1.86305 * 109.46968 * 208.50521 * 21 20 19 23 23 C 1.86300 * 109.47228 * 328.50397 * 21 20 19 24 24 C 1.86301 * 109.47345 * 88.50691 * 21 20 19 25 25 H 1.09000 * 109.47265 * 299.99942 * 1 2 3 26 26 H 1.09005 * 109.46973 * 60.00108 * 1 2 3 27 27 H 1.09003 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46973 * 119.99892 * 2 1 3 29 29 H 0.96999 * 120.00196 * 179.97438 * 4 3 2 30 30 H 0.96999 * 119.99630 * 245.00056 * 12 9 2 31 31 H 1.08003 * 120.76730 * 0.02852 * 14 13 12 32 32 H 1.08002 * 120.26137 * 179.76225 * 15 14 13 33 33 H 1.07995 * 119.45740 * 180.27885 * 16 15 14 34 34 H 1.09003 * 109.47373 * 60.00040 * 22 21 20 35 35 H 1.09003 * 109.46978 * 180.02562 * 22 21 20 36 36 H 1.09004 * 109.47206 * 299.99962 * 22 21 20 37 37 H 1.08994 * 109.47199 * 60.00261 * 23 21 20 38 38 H 1.09003 * 109.46914 * 180.02562 * 23 21 20 39 39 H 1.09003 * 109.47078 * 299.99939 * 23 21 20 40 40 H 1.08999 * 109.47494 * 59.99542 * 24 21 20 41 41 H 1.09003 * 109.47381 * 179.97438 * 24 21 20 42 42 H 1.09007 * 109.46789 * 299.99924 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1544 2.0562 1.1038 5 14 2.4766 2.2543 -1.6116 6 1 1.2794 2.9402 -2.1607 7 1 3.5521 3.2504 -1.3737 8 1 2.9517 1.2351 -2.5815 9 16 2.1347 -0.8553 -1.4810 10 8 3.5214 -1.1411 -1.3605 11 8 1.6107 -0.2500 -2.6552 12 7 1.4052 -2.3409 -1.4271 13 6 0.0194 -2.4417 -1.5425 14 6 -0.6863 -1.5744 -2.3707 15 6 -2.0633 -1.7097 -2.4486 16 6 -2.6929 -2.7010 -1.7163 17 7 -2.0056 -3.5146 -0.9418 18 6 -0.6855 -3.4214 -0.8297 19 6 0.0218 -4.3270 0.0248 20 6 0.6019 -5.0699 0.7247 21 14 1.5405 -6.2718 1.8580 22 6 2.7562 -5.3206 2.9012 23 6 0.3301 -7.1551 2.9649 24 6 2.4558 -7.5183 0.8191 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 0.8900 29 1 2.4781 2.9706 1.1038 30 1 1.9421 -3.1410 -1.3152 31 1 -0.1732 -0.8110 -2.9367 32 1 -2.6402 -1.0496 -3.0793 33 1 -3.7655 -2.8089 -1.7809 34 1 2.2207 -4.5912 3.5091 35 1 3.2950 -6.0102 3.5510 36 1 3.4644 -4.8037 2.2535 37 1 -0.3811 -7.7116 2.3546 38 1 0.8686 -7.8443 3.6154 39 1 -0.2054 -6.4258 3.5728 40 1 3.1641 -7.0016 0.1714 41 1 2.9947 -8.2076 1.4692 42 1 1.7446 -8.0749 0.2087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193105701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:37 Heat of formation + Delta-G solvation = 25.346581 kcal Electronic energy + Delta-G solvation = -25373.153548 eV Core-core repulsion = 21799.239268 eV Total energy + Delta-G solvation = -3573.914280 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 339.099 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66552 -38.76855 -37.93477 -37.58651 -37.05204 -34.77143 -33.48707 -32.45318 -30.48420 -29.43881 -28.27772 -28.27187 -26.39656 -25.29418 -24.48150 -22.22441 -20.62235 -20.20225 -19.58678 -19.20044 -18.31877 -17.50198 -17.08269 -16.72797 -16.66995 -15.95233 -15.59773 -15.29550 -15.02348 -14.76590 -14.58466 -14.15705 -14.11906 -13.98528 -13.87234 -13.86412 -13.75742 -13.54884 -13.24852 -13.16725 -13.15239 -13.13760 -12.96934 -12.88953 -12.71996 -12.37615 -12.13052 -11.95230 -11.93553 -11.79929 -11.64278 -10.87713 -10.76060 -10.58822 -10.46981 -10.36372 -9.43637 -1.38121 -0.39725 0.04761 0.37920 0.50105 0.97581 1.10896 1.28517 1.37259 1.56327 1.61790 1.63292 2.19262 2.30702 2.32870 2.46010 2.68447 2.83315 2.91853 3.22082 3.47702 3.53833 3.77811 3.90738 3.95955 4.07405 4.25399 4.46074 4.51326 4.53945 4.64964 4.83199 4.84994 4.85524 4.88463 4.90837 4.91047 4.93482 4.93721 5.12387 5.41536 5.60436 5.63020 5.69728 5.70477 6.44177 6.49044 6.79950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.547 4.547 3 C 0.015 3.985 4 N -0.604 5.604 5 Si 0.847 3.153 6 H -0.195 1.195 7 H -0.217 1.217 8 H -0.219 1.219 9 S 2.597 3.403 10 O -0.960 6.960 11 O -0.944 6.944 12 N -1.038 6.038 13 C 0.122 3.878 14 C -0.135 4.135 15 C -0.121 4.121 16 C 0.085 3.915 17 N -0.479 5.479 18 C 0.178 3.822 19 C -0.181 4.181 20 C -0.358 4.358 21 Si 1.198 2.802 22 C -0.464 4.464 23 C -0.464 4.464 24 C -0.463 4.463 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.175 0.825 29 H 0.360 0.640 30 H 0.435 0.565 31 H 0.188 0.812 32 H 0.185 0.815 33 H 0.193 0.807 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.921 0.351 1.315 2.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.659 4.659 3 C -0.236 4.236 4 N -0.219 5.219 5 Si 0.660 3.340 6 H -0.116 1.116 7 H -0.139 1.139 8 H -0.142 1.142 9 S 2.692 3.308 10 O -0.950 6.950 11 O -0.934 6.934 12 N -0.788 5.788 13 C 0.022 3.978 14 C -0.164 4.164 15 C -0.141 4.141 16 C -0.074 4.074 17 N -0.188 5.188 18 C 0.040 3.960 19 C -0.182 4.182 20 C -0.392 4.392 21 Si 1.379 2.621 22 C -0.571 4.571 23 C -0.571 4.571 24 C -0.571 4.571 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.094 0.906 28 H 0.193 0.807 29 H 0.180 0.820 30 H 0.274 0.726 31 H 0.205 0.795 32 H 0.202 0.798 33 H 0.210 0.790 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.792 0.479 1.227 2.224 hybrid contribution 0.330 0.786 -0.293 0.901 sum -1.462 1.265 0.934 2.147 Atomic orbital electron populations 1.21992 0.86991 1.04551 1.06647 1.29629 1.08807 1.05361 1.22146 1.29154 0.95437 0.96072 1.02965 1.67988 1.08605 1.14850 1.30474 0.87035 0.85752 0.85401 0.75814 1.11642 1.13902 1.14186 1.05813 0.73657 0.73718 0.77599 1.93624 1.30770 1.82791 1.87783 1.93574 1.79966 1.75974 1.43857 1.53056 1.12465 1.26548 1.86713 1.18281 0.82947 0.99117 0.97420 1.22839 0.96415 1.00800 0.96303 1.22629 0.93759 0.98670 0.99015 1.23423 1.01921 0.90418 0.91679 1.67800 1.06144 1.26075 1.18744 1.16834 0.88998 0.94720 0.95416 1.20723 0.99558 0.98698 0.99204 1.37522 1.00508 1.00740 1.00387 0.76413 0.63057 0.61010 0.61593 1.26231 1.11511 1.09445 1.09952 1.26239 1.11776 1.08574 1.10528 1.26230 1.08699 1.11997 1.10154 0.88682 0.88715 0.90578 0.80738 0.82015 0.72576 0.79481 0.79790 0.79015 0.91002 0.89166 0.90809 0.91308 0.89216 0.91220 0.90850 0.89194 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.36 7.68 71.98 0.55 0.92 16 2 C -0.55 0.21 3.33 29.85 0.10 0.31 16 3 C 0.01 0.01 4.98 88.67 0.44 0.45 16 4 N -0.60 -0.51 13.82 24.11 0.33 -0.18 16 5 Si 0.85 0.67 26.44 68.60 1.81 2.48 16 6 H -0.20 0.18 7.11 99.48 0.71 0.89 16 7 H -0.22 0.07 7.11 99.48 0.71 0.78 16 8 H -0.22 -0.90 5.08 99.48 0.51 -0.39 16 9 S 2.60 9.34 3.43 -56.49 -0.19 9.15 16 10 O -0.96 -8.69 18.08 -127.65 -2.31 -11.00 16 11 O -0.94 -4.59 11.05 -127.65 -1.41 -6.00 16 12 N -1.04 -2.27 5.38 -50.61 -0.27 -2.54 16 13 C 0.12 0.39 3.94 38.62 0.15 0.54 16 14 C -0.14 0.02 7.03 22.57 0.16 0.18 16 15 C -0.12 0.49 10.10 22.39 0.23 0.72 16 16 C 0.09 -0.07 11.17 84.75 0.95 0.87 16 17 N -0.48 -3.20 10.28 -188.63 -1.94 -5.14 16 18 C 0.18 1.23 6.20 40.71 0.25 1.49 16 19 C -0.18 -1.36 12.53 30.02 0.38 -0.98 16 20 C -0.36 -1.13 12.14 74.32 0.90 -0.23 16 21 Si 1.20 -6.95 14.26 68.60 0.98 -5.97 16 22 C -0.46 2.46 8.65 113.37 0.98 3.44 16 23 C -0.46 1.96 8.65 113.37 0.98 2.94 16 24 C -0.46 2.29 8.65 113.37 0.98 3.28 16 25 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.09 -0.52 7.39 -2.38 -0.02 -0.54 16 27 H 0.08 -0.12 4.78 -2.39 -0.01 -0.13 16 28 H 0.18 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.36 -1.12 8.23 -92.71 -0.76 -1.89 16 30 H 0.44 0.09 8.28 -96.75 -0.80 -0.71 16 31 H 0.19 -0.22 5.12 -2.91 -0.01 -0.24 16 32 H 0.18 -2.10 8.06 -2.91 -0.02 -2.12 16 33 H 0.19 -1.38 8.06 -2.91 -0.02 -1.40 16 34 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 35 H 0.09 -0.64 7.96 -2.39 -0.02 -0.66 16 36 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 38 H 0.09 -0.57 7.96 -2.39 -0.02 -0.59 16 39 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 40 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 41 H 0.09 -0.62 7.96 -2.39 -0.02 -0.64 16 42 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 Total: 0.00 -19.67 364.93 4.11 -15.56 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: 0.05 Total: -10.28 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.05 Total: 13.91 kcal Atomic # 7 Polarization: -5.98 SS G_CDS: -1.88 Total: -7.86 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -3.72 Total: -17.00 kcal Atomic # 14 Polarization: -6.28 SS G_CDS: 2.79 Total: -3.48 kcal Atomic # 16 Polarization: 9.34 SS G_CDS: -0.19 Total: 9.15 kcal Total: -19.67 4.11 -15.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193105701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.911 kcal (2) G-P(sol) polarization free energy of solvation -19.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds