Wall clock time and date at job start Tue Mar 31 2020 20:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 109.46812 * 2 1 4 4 C 1.46907 * 109.47178 * 240.00129 * 2 1 3 5 5 C 1.46897 * 109.46912 * 120.00099 * 2 1 3 6 6 C 1.53005 * 109.47362 * 63.15656 * 5 2 1 7 7 H 1.09003 * 109.46741 * 315.72595 * 6 5 2 8 8 C 1.50701 * 109.46849 * 75.71913 * 6 5 2 9 9 H 1.08004 * 120.00257 * 244.00517 * 8 6 5 10 10 C 1.37879 * 119.99949 * 64.01076 * 8 6 5 11 11 N 1.31517 * 119.99812 * 193.49203 * 10 8 6 12 12 Si 1.86800 * 119.99740 * 13.49163 * 10 8 6 13 13 H 1.48500 * 109.47094 * 89.38787 * 12 10 8 14 14 H 1.48499 * 109.46616 * 209.38539 * 12 10 8 15 15 H 1.48490 * 109.47392 * 329.38572 * 12 10 8 16 16 O 1.42897 * 109.47601 * 195.72435 * 6 5 2 17 17 C 1.42894 * 114.00620 * 151.23599 * 16 6 5 18 18 F 1.39900 * 112.84645 * 44.08721 * 17 16 6 19 19 C 1.53780 * 113.61188 * 272.78823 * 17 16 6 20 20 C 1.53774 * 87.08154 * 270.88079 * 19 17 16 21 21 C 1.53003 * 113.61635 * 220.02169 * 20 19 17 22 22 Br 1.96601 * 109.46902 * 277.49521 * 21 20 19 23 23 C 1.53776 * 113.61729 * 175.29170 * 17 16 6 24 24 H 1.08996 * 109.47002 * 297.69643 * 1 2 3 25 25 H 1.08998 * 109.46656 * 57.69876 * 1 2 3 26 26 H 1.09002 * 109.46907 * 177.69788 * 1 2 3 27 27 H 1.09004 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47723 * 299.99701 * 3 2 1 29 29 H 1.09003 * 109.47100 * 60.00139 * 3 2 1 30 30 H 1.08999 * 109.46557 * 308.58773 * 4 2 1 31 31 H 1.08999 * 109.46983 * 68.58727 * 4 2 1 32 32 H 1.08996 * 109.46758 * 188.58579 * 4 2 1 33 33 H 1.09004 * 109.47187 * 303.15974 * 5 2 1 34 34 H 1.09000 * 109.47387 * 183.15642 * 5 2 1 35 35 H 0.96998 * 119.99179 * 180.02562 * 11 10 8 36 36 H 1.09007 * 113.61817 * 25.43027 * 19 17 16 37 37 H 1.09003 * 113.61576 * 156.33220 * 19 17 16 38 38 H 1.08999 * 113.61655 * 89.11348 * 20 19 17 39 39 H 1.08998 * 109.47077 * 37.49607 * 21 20 19 40 40 H 1.09001 * 109.47006 * 157.49649 * 21 20 19 41 41 H 1.09003 * 113.61394 * 203.66546 * 23 17 16 42 42 H 1.09008 * 113.61292 * 334.47978 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9588 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5146 -2.1562 1.1603 7 1 0.4699 -2.2107 0.8539 8 6 2.3672 -2.9136 0.1753 9 1 1.9185 -3.3461 -0.7068 10 6 3.7202 -3.0547 0.4002 11 7 4.5072 -3.4742 -0.5664 12 14 4.4353 -2.6498 2.0778 13 1 4.4055 -3.8625 2.9343 14 1 5.8383 -2.1897 1.9197 15 1 3.6306 -1.5754 2.7127 16 8 1.6607 -2.7332 2.4594 17 6 0.7402 -3.7915 2.7323 18 9 0.6063 -4.6842 1.6634 19 6 -0.6025 -3.3077 3.3050 20 6 0.0364 -3.4326 4.6982 21 6 -0.9094 -4.0024 5.7574 22 35 -2.0532 -2.5641 6.4562 23 6 0.9788 -4.4820 4.0855 24 1 -0.3633 0.4776 0.9099 25 1 -0.3632 0.5492 -0.8686 26 1 -0.3633 -1.0269 -0.0413 27 1 3.0487 1.3850 0.0005 28 1 1.5954 1.8988 -0.8900 29 1 1.5953 1.8988 0.8900 30 1 1.4755 -1.6662 -1.2795 31 1 1.7262 -0.0977 -2.0828 32 1 3.0379 -0.8272 -1.1261 33 1 1.5498 -0.2124 2.0885 34 1 3.0472 -0.6438 1.2282 35 1 5.4590 -3.5737 -0.4079 36 1 -0.8511 -2.2829 3.0290 37 1 -1.4247 -4.0035 3.1378 38 1 0.5463 -2.5273 5.0275 39 1 -1.5321 -4.7768 5.3096 40 1 -0.3261 -4.4311 6.5723 41 1 0.5890 -5.4989 4.1315 42 1 2.0073 -4.4066 4.4388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224323816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:04 Heat of formation + Delta-G solvation = 39.294868 kcal Electronic energy + Delta-G solvation = -23984.846359 eV Core-core repulsion = 20466.515769 eV Total energy + Delta-G solvation = -3518.330590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.087 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.23392 -43.42197 -40.10666 -37.70799 -34.34872 -32.55901 -31.77865 -30.52972 -30.16391 -28.52345 -27.82021 -27.07925 -24.73486 -23.24925 -22.79763 -21.08195 -19.41537 -18.62263 -18.51142 -17.90677 -17.74334 -17.02385 -16.47578 -16.17045 -15.95321 -15.21604 -15.03065 -14.90877 -14.56379 -14.37498 -14.27367 -14.18041 -14.14788 -14.04472 -13.80516 -13.58341 -13.53959 -13.38545 -13.18704 -12.68001 -12.30612 -12.09314 -12.01583 -11.93285 -11.86562 -11.32716 -10.86188 -10.82676 -10.79477 -10.27504 -10.09782 -7.78288 -5.95152 0.19219 0.66539 1.85455 1.92418 2.12946 2.21227 2.29696 2.32204 2.70438 2.88371 3.06053 3.08880 3.15379 3.23082 3.31998 3.42427 3.45876 3.53510 3.58496 3.63510 3.66184 3.70212 3.91517 3.94594 3.97939 4.04152 4.16312 4.21160 4.31058 4.48223 4.52966 4.59472 4.63161 4.79057 4.88434 5.03334 5.13167 5.61488 6.21699 6.66521 7.16833 7.78225 9.28481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.257 5.257 3 C -0.040 4.040 4 C -0.034 4.034 5 C -0.004 4.004 6 C 0.165 3.835 7 H 0.054 0.946 8 C -0.581 4.581 9 H 0.093 0.907 10 C 0.093 3.907 11 N -0.848 5.848 12 Si 0.890 3.110 13 H -0.271 1.271 14 H -0.297 1.297 15 H -0.255 1.255 16 O -0.366 6.366 17 C 0.267 3.733 18 F -0.189 7.189 19 C -0.168 4.168 20 C -0.102 4.102 21 C -0.067 4.067 22 Br -0.162 7.162 23 C -0.141 4.141 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.280 0.720 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.080 12.874 -0.812 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.084 4.916 3 C -0.182 4.182 4 C -0.174 4.174 5 C -0.125 4.125 6 C 0.109 3.891 7 H 0.072 0.928 8 C -0.617 4.617 9 H 0.110 0.890 10 C -0.119 4.119 11 N -0.479 5.479 12 Si 0.720 3.280 13 H -0.196 1.196 14 H -0.225 1.225 15 H -0.182 1.182 16 O -0.288 6.288 17 C 0.210 3.790 18 F -0.170 7.170 19 C -0.207 4.207 20 C -0.121 4.121 21 C -0.183 4.183 22 Br -0.081 7.081 23 C -0.180 4.180 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.165 0.835 31 H 0.109 0.891 32 H 0.145 0.855 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.101 0.899 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.139 13.318 -0.559 15.618 hybrid contribution 0.704 -0.504 0.625 1.068 sum -7.435 12.814 0.066 14.814 Atomic orbital electron populations 1.24108 0.77765 1.09172 1.07879 1.45760 1.14357 1.14393 1.17082 1.24043 1.05661 0.80487 1.08004 1.24595 1.07525 1.02054 0.83262 1.24442 1.04814 0.98346 0.84900 1.20328 0.98157 0.87673 0.82965 0.92790 1.21099 0.92709 1.39817 1.08025 0.88966 1.25016 0.96889 0.93344 0.96645 1.69882 1.06128 1.40151 1.31772 0.86824 0.76886 0.80515 0.83814 1.19632 1.22500 1.18164 1.88072 1.56257 1.47963 1.36463 1.22579 0.90241 0.82624 0.83595 1.92987 1.95889 1.68720 1.59404 1.24201 0.97585 1.03498 0.95373 1.22483 0.96258 1.00127 0.93203 1.24757 0.97446 0.95002 1.01097 1.97424 1.69573 1.53003 1.88147 1.23742 1.01988 0.99356 0.92898 0.87020 0.86636 0.85994 0.86427 0.86545 0.86975 0.83528 0.89062 0.85501 0.87485 0.85650 0.90944 0.89927 0.88001 0.87134 0.87861 0.87662 0.87388 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.57 7.73 60.07 0.46 1.03 16 2 N -0.26 2.54 0.05 -395.61 -0.02 2.52 16 3 C -0.04 0.51 8.00 60.06 0.48 0.99 16 4 C -0.03 0.25 6.72 60.07 0.40 0.65 16 5 C 0.00 0.02 2.98 -3.82 -0.01 0.01 16 6 C 0.16 -0.04 1.68 -27.88 -0.05 -0.08 16 7 H 0.05 -0.13 5.47 -51.93 -0.28 -0.41 16 8 C -0.58 -2.91 5.40 -34.44 -0.19 -3.10 16 9 H 0.09 0.70 7.22 -52.48 -0.38 0.32 16 10 C 0.09 0.77 5.03 -17.82 -0.09 0.68 16 11 N -0.85 -9.80 13.96 55.43 0.77 -9.03 16 12 Si 0.89 6.49 24.40 -169.99 -4.15 2.34 16 13 H -0.27 -2.69 7.11 56.52 0.40 -2.29 16 14 H -0.30 -2.66 7.11 56.52 0.40 -2.25 16 15 H -0.26 -0.96 5.06 56.52 0.29 -0.68 16 16 O -0.37 -0.87 6.31 -35.23 -0.22 -1.09 16 17 C 0.27 0.52 1.98 -25.92 -0.05 0.47 16 18 F -0.19 -1.03 16.06 2.25 0.04 -0.99 16 19 C -0.17 0.25 7.36 -25.92 -0.19 0.06 16 20 C -0.10 0.15 3.63 -89.81 -0.33 -0.18 16 21 C -0.07 0.14 6.40 37.16 0.24 0.38 16 22 Br -0.16 0.02 33.93 -68.01 -2.31 -2.29 16 23 C -0.14 -0.09 7.37 -25.92 -0.19 -0.28 16 24 H 0.11 -1.48 8.10 -51.93 -0.42 -1.90 16 25 H 0.12 -1.62 8.13 -51.93 -0.42 -2.04 16 26 H 0.12 -1.26 5.95 -51.93 -0.31 -1.57 16 27 H 0.12 -1.41 8.13 -51.93 -0.42 -1.83 16 28 H 0.12 -1.69 8.07 -51.93 -0.42 -2.11 16 29 H 0.11 -1.56 8.14 -51.93 -0.42 -1.98 16 30 H 0.15 -0.64 5.11 -51.93 -0.27 -0.91 16 31 H 0.09 -0.93 8.02 -51.93 -0.42 -1.34 16 32 H 0.13 -0.50 7.43 -51.93 -0.39 -0.89 16 33 H 0.11 -0.78 8.09 -51.93 -0.42 -1.20 16 34 H 0.13 -0.38 4.95 -51.93 -0.26 -0.64 16 35 H 0.28 3.24 8.31 -40.82 -0.34 2.90 16 36 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 37 H 0.10 -0.19 7.96 -51.93 -0.41 -0.60 16 38 H 0.11 -0.13 8.14 -51.93 -0.42 -0.55 16 39 H 0.10 -0.29 7.94 -51.93 -0.41 -0.71 16 40 H 0.10 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.11 -0.04 8.10 -51.93 -0.42 -0.46 16 42 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 LS Contribution 335.94 15.07 5.06 5.06 Total: 0.00 -18.28 335.94 -7.34 -25.62 By element: Atomic # 1 Polarization: -15.76 SS G_CDS: -7.01 Total: -22.77 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 0.49 Total: 0.63 kcal Atomic # 7 Polarization: -7.26 SS G_CDS: 0.75 Total: -6.50 kcal Atomic # 8 Polarization: -0.87 SS G_CDS: -0.22 Total: -1.09 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 6.49 SS G_CDS: -4.15 Total: 2.34 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.31 Total: -2.29 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -18.28 -7.34 -25.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224323816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.916 kcal (2) G-P(sol) polarization free energy of solvation -18.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds