Wall clock time and date at job start Tue Mar 31 2020 20:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46895 * 109.46812 * 2 1 4 4 C 1.46907 * 109.47178 * 240.00129 * 2 1 3 5 5 C 1.46897 * 109.46912 * 120.00099 * 2 1 3 6 6 C 1.53005 * 109.47362 * 63.15656 * 5 2 1 7 7 H 1.09003 * 109.46741 * 315.72595 * 6 5 2 8 8 C 1.50701 * 109.46849 * 75.71913 * 6 5 2 9 9 H 1.08004 * 120.00257 * 244.00517 * 8 6 5 10 10 C 1.37879 * 119.99949 * 64.01076 * 8 6 5 11 11 N 1.31517 * 119.99812 * 193.49203 * 10 8 6 12 12 Si 1.86800 * 119.99740 * 13.49163 * 10 8 6 13 13 H 1.48500 * 109.47094 * 89.38787 * 12 10 8 14 14 H 1.48499 * 109.46616 * 209.38539 * 12 10 8 15 15 H 1.48490 * 109.47392 * 329.38572 * 12 10 8 16 16 O 1.42897 * 109.47601 * 195.72435 * 6 5 2 17 17 C 1.42894 * 114.00620 * 151.23599 * 16 6 5 18 18 F 1.39900 * 112.84645 * 44.08721 * 17 16 6 19 19 C 1.53780 * 113.61188 * 272.78823 * 17 16 6 20 20 C 1.53774 * 87.08154 * 270.88079 * 19 17 16 21 21 C 1.53003 * 113.61635 * 220.02169 * 20 19 17 22 22 Br 1.96601 * 109.46902 * 277.49521 * 21 20 19 23 23 C 1.53776 * 113.61729 * 175.29170 * 17 16 6 24 24 H 1.08996 * 109.47002 * 297.69643 * 1 2 3 25 25 H 1.08998 * 109.46656 * 57.69876 * 1 2 3 26 26 H 1.09002 * 109.46907 * 177.69788 * 1 2 3 27 27 H 1.09004 * 109.47010 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47723 * 299.99701 * 3 2 1 29 29 H 1.09003 * 109.47100 * 60.00139 * 3 2 1 30 30 H 1.08999 * 109.46557 * 308.58773 * 4 2 1 31 31 H 1.08999 * 109.46983 * 68.58727 * 4 2 1 32 32 H 1.08996 * 109.46758 * 188.58579 * 4 2 1 33 33 H 1.09004 * 109.47187 * 303.15974 * 5 2 1 34 34 H 1.09000 * 109.47387 * 183.15642 * 5 2 1 35 35 H 0.96998 * 119.99179 * 180.02562 * 11 10 8 36 36 H 1.09007 * 113.61817 * 25.43027 * 19 17 16 37 37 H 1.09003 * 113.61576 * 156.33220 * 19 17 16 38 38 H 1.08999 * 113.61655 * 89.11348 * 20 19 17 39 39 H 1.08998 * 109.47077 * 37.49607 * 21 20 19 40 40 H 1.09001 * 109.47006 * 157.49649 * 21 20 19 41 41 H 1.09003 * 113.61394 * 203.66546 * 23 17 16 42 42 H 1.09008 * 113.61292 * 334.47978 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9588 -0.6925 -1.1995 5 6 1.9587 -0.6925 1.1994 6 6 1.5146 -2.1562 1.1603 7 1 0.4699 -2.2107 0.8539 8 6 2.3672 -2.9136 0.1753 9 1 1.9185 -3.3461 -0.7068 10 6 3.7202 -3.0547 0.4002 11 7 4.5072 -3.4742 -0.5664 12 14 4.4353 -2.6498 2.0778 13 1 4.4055 -3.8625 2.9343 14 1 5.8383 -2.1897 1.9197 15 1 3.6306 -1.5754 2.7127 16 8 1.6607 -2.7332 2.4594 17 6 0.7402 -3.7915 2.7323 18 9 0.6063 -4.6842 1.6634 19 6 -0.6025 -3.3077 3.3050 20 6 0.0364 -3.4326 4.6982 21 6 -0.9094 -4.0024 5.7574 22 35 -2.0532 -2.5641 6.4562 23 6 0.9788 -4.4820 4.0855 24 1 -0.3633 0.4776 0.9099 25 1 -0.3632 0.5492 -0.8686 26 1 -0.3633 -1.0269 -0.0413 27 1 3.0487 1.3850 0.0005 28 1 1.5954 1.8988 -0.8900 29 1 1.5953 1.8988 0.8900 30 1 1.4755 -1.6662 -1.2795 31 1 1.7262 -0.0977 -2.0828 32 1 3.0379 -0.8272 -1.1261 33 1 1.5498 -0.2124 2.0885 34 1 3.0472 -0.6438 1.2282 35 1 5.4590 -3.5737 -0.4079 36 1 -0.8511 -2.2829 3.0290 37 1 -1.4247 -4.0035 3.1378 38 1 0.5463 -2.5273 5.0275 39 1 -1.5321 -4.7768 5.3096 40 1 -0.3261 -4.4311 6.5723 41 1 0.5890 -5.4989 4.1315 42 1 2.0073 -4.4066 4.4388 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224323816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:03 Heat of formation + Delta-G solvation = 32.975419 kcal Electronic energy + Delta-G solvation = -23985.120391 eV Core-core repulsion = 20466.515769 eV Total energy + Delta-G solvation = -3518.604622 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 338.087 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.52705 -42.75997 -40.12627 -37.75425 -34.81667 -32.51730 -31.66384 -29.60624 -29.56683 -28.39558 -27.67930 -27.06370 -24.52179 -23.19557 -22.64308 -21.08457 -19.41439 -18.25495 -17.93306 -17.67981 -17.57639 -17.09285 -16.63921 -16.21450 -15.99524 -15.20421 -14.94554 -14.49704 -14.48045 -14.25362 -14.13934 -13.76844 -13.65842 -13.59869 -13.39575 -13.25472 -13.21603 -13.10174 -12.94532 -12.75406 -12.50682 -12.30985 -12.21113 -12.03204 -11.85892 -11.44410 -11.20805 -10.82917 -10.76555 -10.71120 -10.39368 -8.45801 -6.54037 0.79626 0.89908 1.24710 1.44186 1.50558 2.24136 2.32780 2.86366 3.00483 3.04870 3.10447 3.22597 3.36922 3.49114 3.63148 3.83810 3.98340 4.08597 4.17767 4.21260 4.26160 4.28352 4.39635 4.40971 4.51725 4.58910 4.59119 4.63595 4.65602 4.70845 4.73496 4.81277 4.85903 4.89977 5.00013 5.20314 5.22094 5.26215 5.92878 6.17382 6.58869 7.19103 8.64396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.245 5.245 3 C -0.046 4.046 4 C -0.029 4.029 5 C 0.004 3.996 6 C 0.157 3.843 7 H 0.082 0.918 8 C -0.539 4.539 9 H 0.059 0.941 10 C 0.055 3.945 11 N -0.912 5.912 12 Si 0.916 3.084 13 H -0.313 1.313 14 H -0.327 1.327 15 H -0.193 1.193 16 O -0.377 6.377 17 C 0.242 3.758 18 F -0.217 7.217 19 C -0.149 4.149 20 C -0.087 4.087 21 C -0.062 4.062 22 Br -0.176 7.176 23 C -0.150 4.150 24 H 0.138 0.862 25 H 0.144 0.856 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.113 0.887 31 H 0.130 0.870 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.264 0.736 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.228 16.084 0.356 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 N 0.096 4.904 3 C -0.186 4.186 4 C -0.170 4.170 5 C -0.118 4.118 6 C 0.101 3.899 7 H 0.100 0.900 8 C -0.576 4.576 9 H 0.077 0.923 10 C -0.149 4.149 11 N -0.549 5.549 12 Si 0.748 3.252 13 H -0.241 1.241 14 H -0.257 1.257 15 H -0.115 1.115 16 O -0.299 6.299 17 C 0.185 3.815 18 F -0.198 7.198 19 C -0.187 4.187 20 C -0.106 4.106 21 C -0.177 4.177 22 Br -0.096 7.096 23 C -0.189 4.189 24 H 0.157 0.843 25 H 0.162 0.838 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.131 0.869 31 H 0.148 0.852 32 H 0.108 0.892 33 H 0.167 0.833 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.340 16.578 0.638 20.096 hybrid contribution 1.572 -1.571 0.217 2.233 sum -9.768 15.007 0.855 17.927 Atomic orbital electron populations 1.24356 0.75551 1.08770 1.10735 1.45611 1.15780 1.15118 1.13845 1.24304 1.05307 0.78322 1.10624 1.24252 1.04855 1.01830 0.86100 1.24037 1.03955 0.95198 0.88625 1.20484 0.98816 0.89685 0.80905 0.90017 1.21333 0.91923 1.36797 1.07528 0.92316 1.25442 0.97874 0.94106 0.97491 1.70029 1.05470 1.45825 1.33557 0.86450 0.76010 0.80432 0.82271 1.24132 1.25717 1.11545 1.88007 1.57235 1.48028 1.36593 1.23200 0.92601 0.82646 0.83033 1.92934 1.96138 1.69908 1.60823 1.24115 0.95468 1.04992 0.94085 1.22375 0.95557 0.99238 0.93437 1.24789 0.97261 0.94556 1.01122 1.97429 1.69990 1.53780 1.88368 1.23847 1.01734 1.00554 0.92789 0.84350 0.83817 0.87887 0.87555 0.83929 0.84465 0.86898 0.85213 0.89227 0.83333 0.87894 0.92634 0.87321 0.87331 0.86796 0.86817 0.87029 0.86809 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.48 7.73 127.69 0.99 2.47 16 2 N -0.24 5.41 0.05 ******* -0.07 5.34 16 3 C -0.05 1.31 8.00 127.69 1.02 2.33 16 4 C -0.03 0.41 6.72 127.69 0.86 1.27 16 5 C 0.00 -0.05 2.98 86.31 0.26 0.21 16 6 C 0.16 -0.14 1.68 29.85 0.05 -0.09 16 7 H 0.08 -0.50 5.47 -2.39 -0.01 -0.51 16 8 C -0.54 -6.78 5.40 25.60 0.14 -6.64 16 9 H 0.06 1.13 7.22 -2.91 -0.02 1.11 16 10 C 0.05 1.11 5.03 84.65 0.43 1.54 16 11 N -0.91 -25.99 13.96 21.45 0.30 -25.69 16 12 Si 0.92 15.62 24.40 68.60 1.67 17.29 16 13 H -0.31 -7.45 7.11 99.48 0.71 -6.74 16 14 H -0.33 -7.06 7.11 99.48 0.71 -6.35 16 15 H -0.19 -1.19 5.06 99.48 0.50 -0.69 16 16 O -0.38 -1.56 6.31 -148.98 -0.94 -2.50 16 17 C 0.24 0.90 1.98 31.12 0.06 0.96 16 18 F -0.22 -2.64 16.06 44.97 0.72 -1.92 16 19 C -0.15 0.78 7.36 31.12 0.23 1.01 16 20 C -0.09 0.40 3.63 -10.27 -0.04 0.36 16 21 C -0.06 0.36 6.40 71.98 0.46 0.82 16 22 Br -0.18 0.36 33.93 -20.37 -0.69 -0.33 16 23 C -0.15 -0.23 7.37 31.12 0.23 0.00 16 24 H 0.14 -4.43 8.10 -2.39 -0.02 -4.45 16 25 H 0.14 -4.67 8.13 -2.39 -0.02 -4.69 16 26 H 0.10 -2.38 5.95 -2.39 -0.01 -2.39 16 27 H 0.11 -2.71 8.13 -2.39 -0.02 -2.73 16 28 H 0.14 -4.74 8.07 -2.39 -0.02 -4.76 16 29 H 0.14 -4.51 8.14 -2.39 -0.02 -4.53 16 30 H 0.11 -0.79 5.11 -2.39 -0.01 -0.81 16 31 H 0.13 -2.82 8.02 -2.39 -0.02 -2.84 16 32 H 0.09 -0.49 7.43 -2.39 -0.02 -0.51 16 33 H 0.15 -2.91 8.09 -2.38 -0.02 -2.93 16 34 H 0.10 -0.72 4.95 -2.39 -0.01 -0.73 16 35 H 0.26 7.74 8.31 -92.71 -0.77 6.97 16 36 H 0.11 -1.10 8.14 -2.38 -0.02 -1.12 16 37 H 0.11 -0.65 7.96 -2.39 -0.02 -0.67 16 38 H 0.11 -0.53 8.14 -2.39 -0.02 -0.55 16 39 H 0.11 -0.86 7.94 -2.39 -0.02 -0.88 16 40 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.11 -0.03 8.10 -2.39 -0.02 -0.05 16 42 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 Total: 0.00 -51.30 335.94 6.46 -44.84 By element: Atomic # 1 Polarization: -42.05 SS G_CDS: 0.79 Total: -41.26 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 4.68 Total: 4.23 kcal Atomic # 7 Polarization: -20.58 SS G_CDS: 0.23 Total: -20.35 kcal Atomic # 8 Polarization: -1.56 SS G_CDS: -0.94 Total: -2.50 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.72 Total: -1.92 kcal Atomic # 14 Polarization: 15.62 SS G_CDS: 1.67 Total: 17.29 kcal Atomic # 35 Polarization: 0.36 SS G_CDS: -0.69 Total: -0.33 kcal Total: -51.30 6.46 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224323816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.816 kcal (2) G-P(sol) polarization free energy of solvation -51.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds