Wall clock time and date at job start Tue Mar 31 2020 21:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47017 * 54.99761 * 7 6 4 9 9 C 1.50698 * 109.47721 * 174.99887 * 7 6 4 10 10 H 1.07994 * 120.00417 * 240.00789 * 9 7 6 11 11 C 1.37880 * 119.99699 * 59.99248 * 9 7 6 12 12 N 1.31511 * 120.00362 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99897 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46945 * 90.00626 * 13 11 9 15 15 H 1.48505 * 109.47239 * 210.00624 * 13 11 9 16 16 H 1.48502 * 109.47052 * 330.00453 * 13 11 9 17 17 O 1.42903 * 109.47386 * 295.00166 * 7 6 4 18 18 C 1.35351 * 117.00483 * 149.99637 * 17 7 6 19 19 N 1.30699 * 125.07508 * 359.70039 * 18 17 7 20 20 C 1.35848 * 109.38611 * 179.82957 * 19 18 17 21 21 C 1.40491 * 107.20131 * 0.42070 * 20 19 18 22 22 N 1.32830 * 119.13811 * 179.76458 * 21 20 19 23 23 C 1.32164 * 120.54878 * 359.96640 * 22 21 20 24 24 O 1.35541 * 118.87123 * 179.97438 * 23 22 21 25 25 N 1.32501 * 122.26075 * 0.03465 * 23 22 21 26 26 C 1.32736 * 121.15292 * 359.97438 * 25 23 22 27 27 O 1.35511 * 120.69949 * 180.02562 * 26 25 23 28 28 N 1.36689 * 125.07741 * 179.97438 * 18 17 7 29 29 H 0.96999 * 126.27950 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 32 32 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 33 33 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 34 34 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 35 35 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 36 36 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 37 37 H 0.96992 * 120.00719 * 179.97438 * 12 11 9 38 38 H 0.96696 * 114.00330 * 270.04076 * 24 23 22 39 39 H 0.96701 * 114.00299 * 269.97595 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7805 2.2499 -0.8423 9 6 6.0244 4.2445 -0.1234 10 1 6.6590 4.4932 -0.9611 11 6 5.7407 5.1961 0.8331 12 7 4.9681 4.8932 1.8533 13 14 6.4539 6.9158 0.6799 14 1 5.5189 7.7724 -0.0927 15 1 6.6497 7.4930 2.0342 16 1 7.7602 6.8491 -0.0233 17 8 5.8946 2.2632 1.2206 18 6 7.0488 1.5576 1.1750 19 7 7.7764 1.3763 0.1045 20 6 8.8636 0.6255 0.4201 21 6 8.7770 0.3239 1.7896 22 7 9.7288 -0.4130 2.3511 23 6 10.7449 -0.8587 1.6329 24 8 11.6973 -1.6074 2.2407 25 7 10.8650 -0.5977 0.3394 26 6 9.9594 0.1313 -0.3010 27 8 10.0911 0.3922 -1.6243 28 7 7.6246 0.9238 2.2404 29 1 7.2832 0.9014 3.1480 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5844 3.4700 -0.8895 36 1 3.5852 3.4690 0.8905 37 1 4.7688 5.5625 2.5264 38 1 12.4287 -1.0917 2.6070 39 1 10.5846 1.2008 -1.8185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227436523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:08 Heat of formation + Delta-G solvation = -89.550437 kcal Electronic energy + Delta-G solvation = -29448.333235 eV Core-core repulsion = 24973.592724 eV Total energy + Delta-G solvation = -4474.740511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23045 -39.97361 -39.63415 -37.90524 -37.55952 -36.14960 -35.82550 -33.43539 -33.09937 -31.92717 -31.68168 -30.45378 -28.38755 -26.48407 -24.04499 -23.42777 -23.32044 -22.24040 -21.05191 -20.04595 -19.67926 -19.12860 -17.97505 -17.49316 -17.14790 -16.89761 -16.50453 -16.23404 -15.77843 -15.58732 -15.53598 -14.98749 -14.77024 -14.37092 -13.94907 -13.53623 -13.33207 -12.77321 -12.65475 -12.40507 -12.33914 -12.07615 -11.91370 -11.65583 -11.56535 -11.34094 -11.16426 -11.08791 -10.98742 -10.93062 -10.59198 -10.23732 -10.14627 -9.86698 -9.63155 -9.50821 -9.17774 -8.96252 -8.90479 -7.58758 -6.45836 -4.63845 0.78388 1.25016 2.11405 2.87441 3.02346 3.07614 3.16652 3.18384 3.23194 3.26671 3.80784 3.85700 4.10093 4.20503 4.43406 4.83598 5.00201 5.02089 5.05008 5.08114 5.29850 5.38928 5.72759 5.80401 5.83252 5.84937 6.00335 6.14731 6.20393 6.40151 6.53428 6.75291 6.88485 7.10296 7.19508 7.48458 7.53236 7.55124 7.70702 7.97349 8.16374 8.31220 8.38698 8.59874 9.13053 10.55764 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.004240 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.635648 B = 6602.175512 C = 8744.925010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.455 3.545 5 O -0.515 6.515 6 C -0.102 4.102 7 C 0.233 3.767 8 H 0.060 0.940 9 C -0.542 4.542 10 H 0.076 0.924 11 C 0.081 3.919 12 N -0.861 5.861 13 Si 0.901 3.099 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.268 6.268 18 C 0.536 3.464 19 N -0.506 5.506 20 C -0.020 4.020 21 C 0.296 3.704 22 N -0.518 5.518 23 C 0.496 3.504 24 O -0.452 6.452 25 N -0.540 5.540 26 C 0.415 3.585 27 O -0.460 6.460 28 N -0.579 5.579 29 H 0.431 0.569 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.111 0.889 36 H 0.141 0.859 37 H 0.270 0.730 38 H 0.405 0.595 39 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.394 -4.475 -0.002 4.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.283 6.283 4 C 0.300 3.700 5 O -0.403 6.403 6 C -0.140 4.140 7 C 0.180 3.820 8 H 0.078 0.922 9 C -0.578 4.578 10 H 0.094 0.906 11 C -0.127 4.127 12 N -0.496 5.496 13 Si 0.727 3.273 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.194 1.194 17 O -0.168 6.168 18 C 0.234 3.766 19 N -0.246 5.246 20 C -0.147 4.147 21 C 0.050 3.950 22 N -0.250 5.250 23 C 0.189 3.811 24 O -0.253 6.253 25 N -0.278 5.278 26 C 0.221 3.779 27 O -0.267 6.267 28 N -0.206 5.206 29 H 0.271 0.729 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.159 0.841 37 H 0.080 0.920 38 H 0.263 0.737 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.081 -5.817 -0.264 5.823 hybrid contribution 0.318 1.623 1.132 2.004 sum 0.399 -4.194 0.868 4.302 Atomic orbital electron populations 1.21780 0.93191 1.02408 1.03363 1.22874 0.94928 0.81599 1.02109 1.86565 1.25927 1.31137 1.84634 1.24852 0.79663 0.94220 0.71306 1.90623 1.60224 1.43621 1.45789 1.21880 0.95905 0.88458 1.07739 1.20064 0.88277 0.92856 0.80787 0.92193 1.21468 1.32158 0.93866 1.10340 0.90565 1.25164 0.93657 0.99472 0.94394 1.69835 1.34030 1.34914 1.10840 0.86435 0.79979 0.83050 0.77793 1.19911 1.20903 1.19418 1.86321 1.28837 1.59646 1.41994 1.21068 0.88314 0.86605 0.80595 1.71076 1.05418 1.24072 1.24051 1.20411 0.98631 1.03027 0.92604 1.17880 0.89476 0.96624 0.91021 1.66376 1.03227 1.13827 1.41619 1.18919 0.88035 0.91015 0.83096 1.84791 1.33611 1.32352 1.74554 1.67355 1.31509 1.18267 1.10710 1.17936 0.86494 0.89651 0.83826 1.84716 1.77326 1.48345 1.16304 1.42158 1.19327 1.46021 1.13044 0.72881 0.90785 0.91598 0.91627 0.91740 0.91781 0.87105 0.84119 0.91960 0.73736 0.73417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.83 6.19 37.16 0.23 1.06 16 3 O -0.36 -6.33 10.22 -39.26 -0.40 -6.73 16 4 C 0.46 9.07 7.84 36.01 0.28 9.35 16 5 O -0.51 -11.45 15.17 -24.05 -0.36 -11.82 16 6 C -0.10 -2.10 5.22 -27.88 -0.15 -2.25 16 7 C 0.23 5.35 1.69 -27.89 -0.05 5.31 16 8 H 0.06 1.43 7.05 -51.92 -0.37 1.07 16 9 C -0.54 -13.04 8.90 -34.44 -0.31 -13.35 16 10 H 0.08 1.85 7.81 -52.49 -0.41 1.44 16 11 C 0.08 1.92 5.24 -17.82 -0.09 1.83 16 12 N -0.86 -20.82 10.93 55.43 0.61 -20.21 16 13 Si 0.90 18.77 29.54 -169.99 -5.02 13.75 16 14 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 O -0.27 -6.26 8.46 -32.19 -0.27 -6.53 16 18 C 0.54 11.74 8.83 -88.69 -0.78 10.95 16 19 N -0.51 -11.17 10.12 -12.05 -0.12 -11.29 16 20 C -0.02 -0.40 7.24 -84.51 -0.61 -1.01 16 21 C 0.30 5.63 8.50 -155.57 -1.32 4.31 16 22 N -0.52 -9.19 10.49 -13.98 -0.15 -9.34 16 23 C 0.50 8.19 8.69 -91.23 -0.79 7.40 16 24 O -0.45 -5.92 13.64 -18.32 -0.25 -6.17 16 25 N -0.54 -9.25 10.46 -14.56 -0.15 -9.40 16 26 C 0.42 7.40 7.88 -16.43 -0.13 7.27 16 27 O -0.46 -7.15 13.58 -18.23 -0.25 -7.40 16 28 N -0.58 -10.86 6.23 -13.38 -0.08 -10.94 16 29 H 0.43 6.80 8.96 -40.82 -0.37 6.43 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 36 H 0.14 3.10 6.22 -51.93 -0.32 2.78 16 37 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 38 H 0.41 2.94 9.06 45.56 0.41 3.35 16 39 H 0.41 4.13 9.06 45.56 0.41 4.54 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -31.55 352.00 -6.80 -38.35 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -2.31 Total: 12.73 kcal Atomic # 6 Polarization: 33.04 SS G_CDS: -3.34 Total: 29.70 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.10 Total: -61.18 kcal Atomic # 8 Polarization: -37.11 SS G_CDS: -1.54 Total: -38.65 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.55 -6.80 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227436523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.203 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds