Wall clock time and date at job start Tue Mar 31 2020 21:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45192 * 109.47109 * 2 1 4 4 C 1.34230 * 117.00018 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00015 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00046 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47212 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47017 * 54.99761 * 7 6 4 9 9 C 1.50698 * 109.47721 * 174.99887 * 7 6 4 10 10 H 1.07994 * 120.00417 * 240.00789 * 9 7 6 11 11 C 1.37880 * 119.99699 * 59.99248 * 9 7 6 12 12 N 1.31511 * 120.00362 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 119.99897 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.46945 * 90.00626 * 13 11 9 15 15 H 1.48505 * 109.47239 * 210.00624 * 13 11 9 16 16 H 1.48502 * 109.47052 * 330.00453 * 13 11 9 17 17 O 1.42903 * 109.47386 * 295.00166 * 7 6 4 18 18 C 1.35351 * 117.00483 * 149.99637 * 17 7 6 19 19 N 1.30699 * 125.07508 * 359.70039 * 18 17 7 20 20 C 1.35848 * 109.38611 * 179.82957 * 19 18 17 21 21 C 1.40491 * 107.20131 * 0.42070 * 20 19 18 22 22 N 1.32830 * 119.13811 * 179.76458 * 21 20 19 23 23 C 1.32164 * 120.54878 * 359.96640 * 22 21 20 24 24 O 1.35541 * 118.87123 * 179.97438 * 23 22 21 25 25 N 1.32501 * 122.26075 * 0.03465 * 23 22 21 26 26 C 1.32736 * 121.15292 * 359.97438 * 25 23 22 27 27 O 1.35511 * 120.69949 * 180.02562 * 26 25 23 28 28 N 1.36689 * 125.07741 * 179.97438 * 18 17 7 29 29 H 0.96999 * 126.27950 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.47218 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47066 * 299.99718 * 1 2 3 32 32 H 1.08998 * 109.47698 * 59.99951 * 1 2 3 33 33 H 1.09001 * 109.46829 * 239.99566 * 2 1 3 34 34 H 1.08998 * 109.47230 * 120.00301 * 2 1 3 35 35 H 1.09002 * 109.47060 * 299.99765 * 6 4 3 36 36 H 1.09001 * 109.47380 * 59.99853 * 6 4 3 37 37 H 0.96992 * 120.00719 * 179.97438 * 12 11 9 38 38 H 0.96696 * 114.00330 * 270.04076 * 24 23 22 39 39 H 0.96701 * 114.00299 * 269.97595 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7805 2.2499 -0.8423 9 6 6.0244 4.2445 -0.1234 10 1 6.6590 4.4932 -0.9611 11 6 5.7407 5.1961 0.8331 12 7 4.9681 4.8932 1.8533 13 14 6.4539 6.9158 0.6799 14 1 5.5189 7.7724 -0.0927 15 1 6.6497 7.4930 2.0342 16 1 7.7602 6.8491 -0.0233 17 8 5.8946 2.2632 1.2206 18 6 7.0488 1.5576 1.1750 19 7 7.7764 1.3763 0.1045 20 6 8.8636 0.6255 0.4201 21 6 8.7770 0.3239 1.7896 22 7 9.7288 -0.4130 2.3511 23 6 10.7449 -0.8587 1.6329 24 8 11.6973 -1.6074 2.2407 25 7 10.8650 -0.5977 0.3394 26 6 9.9594 0.1313 -0.3010 27 8 10.0911 0.3922 -1.6243 28 7 7.6246 0.9238 2.2404 29 1 7.2832 0.9014 3.1480 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.5844 3.4700 -0.8895 36 1 3.5852 3.4690 0.8905 37 1 4.7688 5.5625 2.5264 38 1 12.4287 -1.0917 2.6070 39 1 10.5846 1.2008 -1.8185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227436523.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:08 Heat of formation + Delta-G solvation = -120.027774 kcal Electronic energy + Delta-G solvation = -29449.654832 eV Core-core repulsion = 24973.592724 eV Total energy + Delta-G solvation = -4476.062107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.70437 -41.50183 -41.04741 -39.24536 -39.06470 -37.55988 -37.18450 -35.18896 -34.55178 -33.40431 -32.90190 -31.98450 -29.83692 -28.21234 -25.54232 -24.80799 -24.67475 -23.61364 -22.59317 -21.59876 -21.05563 -20.56875 -19.26187 -19.12243 -18.57488 -18.46544 -17.94268 -17.67618 -17.29396 -17.17362 -16.99862 -16.47718 -16.37686 -15.66751 -15.26242 -15.07687 -14.84634 -14.13333 -14.01679 -13.71509 -13.60465 -13.44282 -13.23479 -13.09688 -12.97080 -12.81465 -12.61934 -12.50406 -12.46441 -12.39838 -12.19445 -11.75072 -11.50969 -11.49323 -11.30816 -11.13857 -10.73720 -10.71237 -10.35592 -9.13753 -8.25091 -6.49534 -0.61171 -0.15392 0.62577 1.29147 1.43495 1.47582 1.55393 1.64397 1.77311 1.82212 2.37437 2.42439 2.48220 2.68819 2.94680 3.13044 3.52716 3.75792 3.92198 3.99785 4.12041 4.26351 4.34112 4.43254 4.50565 4.66316 4.78578 4.87640 4.92609 4.98627 5.13693 5.28484 5.35233 5.50984 5.66614 5.82842 5.92614 6.28859 6.49575 6.52581 6.63410 6.77028 6.83703 6.87711 7.30007 8.75922 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.004240 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.635648 B = 6602.175512 C = 8744.925010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.542 6.542 6 C -0.096 4.096 7 C 0.237 3.763 8 H 0.041 0.959 9 C -0.559 4.559 10 H 0.065 0.935 11 C 0.050 3.950 12 N -0.878 5.878 13 Si 0.955 3.045 14 H -0.263 1.263 15 H -0.284 1.284 16 H -0.276 1.276 17 O -0.282 6.282 18 C 0.512 3.488 19 N -0.524 5.524 20 C -0.056 4.056 21 C 0.297 3.703 22 N -0.526 5.526 23 C 0.513 3.487 24 O -0.447 6.447 25 N -0.543 5.543 26 C 0.433 3.567 27 O -0.464 6.464 28 N -0.567 5.567 29 H 0.441 0.559 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.272 0.728 38 H 0.433 0.567 39 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -4.864 0.123 4.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.281 6.281 4 C 0.308 3.692 5 O -0.432 6.432 6 C -0.134 4.134 7 C 0.184 3.816 8 H 0.059 0.941 9 C -0.596 4.596 10 H 0.084 0.916 11 C -0.156 4.156 12 N -0.513 5.513 13 Si 0.780 3.220 14 H -0.188 1.188 15 H -0.209 1.209 16 H -0.201 1.201 17 O -0.183 6.183 18 C 0.209 3.791 19 N -0.265 5.265 20 C -0.182 4.182 21 C 0.052 3.948 22 N -0.260 5.260 23 C 0.207 3.793 24 O -0.253 6.253 25 N -0.282 5.282 26 C 0.238 3.762 27 O -0.275 6.275 28 N -0.195 5.195 29 H 0.284 0.716 30 H 0.120 0.880 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.296 0.704 39 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 0.523 -6.194 -0.124 6.217 hybrid contribution 0.337 1.565 1.072 1.927 sum 0.861 -4.629 0.949 4.803 Atomic orbital electron populations 1.21806 0.89903 1.04381 1.03789 1.23265 0.97462 0.79729 1.01998 1.86543 1.24172 1.33401 1.83951 1.24590 0.80423 0.93512 0.70696 1.90609 1.61088 1.44304 1.47182 1.21730 0.94666 0.89108 1.07860 1.19940 0.89465 0.91980 0.80208 0.94098 1.21536 1.32673 0.94839 1.10506 0.91635 1.25684 0.93844 1.02065 0.94024 1.69914 1.34553 1.35715 1.11148 0.85601 0.79125 0.79711 0.77539 1.18825 1.20932 1.20061 1.86242 1.29687 1.60488 1.41842 1.21052 0.88507 0.87939 0.81603 1.70942 1.06218 1.24496 1.24811 1.20682 0.99276 1.04574 0.93643 1.17974 0.89499 0.96525 0.90793 1.66506 1.03433 1.14493 1.41564 1.19223 0.87949 0.89098 0.83078 1.84756 1.33922 1.32340 1.74308 1.67543 1.31061 1.18584 1.10972 1.18031 0.85572 0.88374 0.84243 1.84651 1.77946 1.49864 1.15000 1.41989 1.19109 1.45347 1.13016 0.71595 0.87995 0.91374 0.90980 0.91649 0.92229 0.85482 0.85335 0.91809 0.70388 0.70607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.29 71.98 0.74 -1.88 16 2 C 0.05 1.34 6.19 71.98 0.45 1.78 16 3 O -0.36 -12.53 10.22 -51.41 -0.53 -13.06 16 4 C 0.46 18.75 7.84 71.24 0.56 19.31 16 5 O -0.54 -24.72 15.17 27.04 0.41 -24.31 16 6 C -0.10 -4.04 5.22 29.85 0.16 -3.89 16 7 C 0.24 11.26 1.69 29.85 0.05 11.31 16 8 H 0.04 2.05 7.05 -2.38 -0.02 2.03 16 9 C -0.56 -27.54 8.90 25.60 0.23 -27.31 16 10 H 0.07 3.28 7.81 -2.91 -0.02 3.25 16 11 C 0.05 2.38 5.24 84.66 0.44 2.82 16 12 N -0.88 -42.83 10.93 21.45 0.23 -42.59 16 13 Si 0.96 38.47 29.54 68.60 2.03 40.50 16 14 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 15 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 16 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 17 O -0.28 -13.59 8.46 -72.59 -0.61 -14.20 16 18 C 0.51 23.07 8.83 179.67 1.59 24.65 16 19 N -0.52 -23.72 10.12 -305.85 -3.10 -26.82 16 20 C -0.06 -2.24 7.24 39.54 0.29 -1.95 16 21 C 0.30 11.23 8.50 133.77 1.14 12.37 16 22 N -0.53 -17.96 10.49 -311.14 -3.26 -21.23 16 23 C 0.51 15.84 8.69 180.56 1.57 17.41 16 24 O -0.45 -10.37 13.64 -88.46 -1.21 -11.57 16 25 N -0.54 -17.54 10.46 -425.51 -4.45 -21.99 16 26 C 0.43 14.99 7.88 85.03 0.67 15.66 16 27 O -0.46 -13.86 13.58 -88.13 -1.20 -15.06 16 28 N -0.57 -21.58 6.23 -306.94 -1.91 -23.49 16 29 H 0.44 14.14 8.96 -92.71 -0.83 13.30 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.77 8.13 -2.39 -0.02 1.75 16 34 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 35 H 0.13 4.78 8.14 -2.39 -0.02 4.76 16 36 H 0.13 5.79 6.22 -2.39 -0.01 5.78 16 37 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 38 H 0.43 4.76 9.06 -74.06 -0.67 4.09 16 39 H 0.43 8.09 9.06 -74.06 -0.67 7.42 16 Total: -1.00 -67.78 352.00 -6.72 -74.50 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: -0.99 Total: 29.04 kcal Atomic # 6 Polarization: 62.40 SS G_CDS: 7.87 Total: 70.27 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -12.49 Total: -136.12 kcal Atomic # 8 Polarization: -75.07 SS G_CDS: -3.13 Total: -78.21 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -67.78 -6.72 -74.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227436523.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.525 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds