Wall clock time and date at job start Tue Mar 31 2020 20:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 108.57555 * 2 1 4 4 O 1.42101 * 108.57910 * 228.96829 * 2 1 3 5 5 C 1.81403 * 101.91842 * 114.48163 * 2 1 3 6 6 C 1.53004 * 109.46622 * 180.02562 * 5 2 1 7 7 N 1.46506 * 109.46994 * 180.02562 * 6 5 2 8 8 C 1.34840 * 125.89770 * 124.99905 * 7 6 5 9 9 C 1.36427 * 107.60834 * 179.97438 * 8 7 6 10 10 C 1.48495 * 126.22057 * 180.02562 * 9 8 7 11 11 C 1.39788 * 119.95887 * 359.97438 * 10 9 8 12 12 C 1.38262 * 120.42148 * 179.97438 * 11 10 9 13 13 C 1.38049 * 120.34080 * 0.02562 * 12 11 10 14 14 F 1.35106 * 120.04476 * 180.02562 * 13 12 11 15 15 C 1.41036 * 119.90942 * 359.97438 * 13 12 11 16 16 C 1.41308 * 120.20525 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99676 * 216.44512 * 16 15 13 18 18 C 1.39920 * 120.00291 * 36.71850 * 16 15 13 19 19 N 1.30855 * 119.99720 * 19.34784 * 18 16 15 20 20 Si 1.86803 * 119.99936 * 199.35360 * 18 16 15 21 21 H 1.48496 * 109.47215 * 94.86720 * 20 18 16 22 22 H 1.48494 * 109.46573 * 214.86554 * 20 18 16 23 23 H 1.48500 * 109.46889 * 334.85909 * 20 18 16 24 24 C 1.38609 * 119.96127 * 180.27502 * 10 9 8 25 25 C 1.40835 * 107.55906 * 0.25961 * 9 8 7 26 26 N 1.30675 * 108.10178 * 359.55790 * 25 9 8 27 27 H 1.09000 * 109.47502 * 305.51311 * 1 2 3 28 28 H 1.09002 * 109.47376 * 65.52188 * 1 2 3 29 29 H 1.09002 * 109.47230 * 185.51575 * 1 2 3 30 30 H 1.09000 * 109.46942 * 60.00776 * 5 2 1 31 31 H 1.09000 * 109.47152 * 299.99903 * 5 2 1 32 32 H 1.08994 * 109.47113 * 60.00155 * 6 5 2 33 33 H 1.09000 * 109.47074 * 299.99700 * 6 5 2 34 34 H 1.07994 * 126.19612 * 359.97438 * 8 7 6 35 35 H 1.08000 * 119.79028 * 0.02562 * 11 10 9 36 36 H 1.07999 * 119.82365 * 180.02562 * 12 11 10 37 37 H 0.96997 * 119.99937 * 180.02562 * 19 18 16 38 38 H 1.08008 * 120.16643 * 359.97438 * 24 10 9 39 39 H 1.08001 * 125.94853 * 179.74143 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7355 1.6154 6 6 3.7054 -0.8182 1.7985 7 7 4.0081 -1.4128 3.1028 8 6 4.7848 -2.4938 3.3179 9 6 4.8125 -2.7213 4.6628 10 6 5.5470 -3.8115 5.3534 11 6 6.3002 -4.7253 4.6107 12 6 6.9883 -5.7437 5.2439 13 6 6.9386 -5.8698 6.6178 14 9 7.6137 -6.8670 7.2304 15 6 6.1830 -4.9557 7.3810 16 6 6.1273 -5.0792 8.7876 17 1 5.2116 -4.8530 9.3136 18 6 7.2601 -5.4891 9.4993 19 7 8.4454 -5.3956 8.9528 20 14 7.0803 -6.1700 11.2295 21 1 7.0118 -7.6523 11.1736 22 1 8.2498 -5.7590 12.0471 23 1 5.8364 -5.6396 11.8433 24 6 5.4799 -3.9255 6.7332 25 6 4.0133 -1.7374 5.2766 26 7 3.5412 -0.9563 4.3414 27 1 -0.3634 0.5969 0.8365 28 1 -0.3634 0.4258 -0.9353 29 1 -0.3634 -1.0229 0.0988 30 1 1.7610 -1.7368 1.6666 31 1 1.7609 -0.1169 2.4043 32 1 4.1327 0.1832 1.7474 33 1 4.1335 -1.4367 1.0096 34 1 5.2931 -3.0745 2.5623 35 1 6.3457 -4.6347 3.5355 36 1 7.5676 -6.4442 4.6607 37 1 9.2306 -5.6801 9.4460 38 1 4.8947 -3.2229 7.3080 39 1 3.8260 -1.6429 6.3360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245478754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:10 Heat of formation + Delta-G solvation = -37.493363 kcal Electronic energy + Delta-G solvation = -25423.429138 eV Core-core repulsion = 21373.778901 eV Total energy + Delta-G solvation = -4049.650237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.87836 -42.14931 -38.98033 -38.04972 -37.12001 -35.81617 -35.34410 -32.42516 -31.90102 -31.41548 -30.34276 -28.76233 -27.05056 -25.26339 -23.38058 -23.11558 -21.25878 -21.15222 -19.83889 -19.23505 -18.25248 -17.70268 -17.37982 -17.19069 -16.98970 -16.91668 -16.27250 -16.14800 -15.66524 -15.61962 -15.22890 -15.01023 -14.44093 -14.21228 -14.06973 -13.98342 -13.92338 -13.71309 -13.44278 -13.26563 -13.17674 -13.10908 -13.07281 -12.92009 -12.74756 -12.44452 -12.38548 -12.12412 -12.00277 -11.67506 -11.54375 -11.18102 -10.94278 -10.41450 -10.06232 -9.40861 -8.65229 -8.32727 -6.37680 -1.02567 0.49847 0.92391 1.04131 1.37630 1.46405 1.51156 1.52042 1.78924 2.07128 2.23968 2.63846 2.84797 3.08358 3.32523 3.56609 3.62193 3.85402 3.95039 4.11145 4.12277 4.21035 4.22833 4.29156 4.38900 4.48094 4.66528 4.75983 4.82149 4.86594 4.97628 5.00282 5.22796 5.42662 5.51921 5.73563 5.82225 6.00640 6.01946 6.06010 6.33034 6.53402 6.69418 6.90680 6.97788 8.38642 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.030576 B = 0.002050 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.530916 B =13655.813445 C =14170.850013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.446 3.554 3 O -0.979 6.979 4 O -0.974 6.974 5 C -0.628 4.628 6 C 0.131 3.869 7 N -0.368 5.368 8 C 0.072 3.928 9 C -0.201 4.201 10 C 0.008 3.992 11 C -0.193 4.193 12 C -0.136 4.136 13 C -0.007 4.007 14 F -0.161 7.161 15 C 0.058 3.942 16 C -0.511 4.511 17 H 0.082 0.918 18 C 0.036 3.964 19 N -0.822 5.822 20 Si 0.976 3.024 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.253 1.253 24 C -0.193 4.193 25 C 0.055 3.945 26 N -0.314 5.314 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.103 0.897 33 H 0.135 0.865 34 H 0.209 0.791 35 H 0.140 0.860 36 H 0.122 0.878 37 H 0.285 0.715 38 H 0.111 0.889 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.699 8.782 -16.280 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.630 3.370 3 O -0.976 6.976 4 O -0.971 6.971 5 C -0.756 4.756 6 C 0.009 3.991 7 N -0.150 5.150 8 C -0.074 4.074 9 C -0.212 4.212 10 C 0.007 3.993 11 C -0.212 4.212 12 C -0.155 4.155 13 C -0.028 4.028 14 F -0.140 7.140 15 C 0.055 3.945 16 C -0.540 4.540 17 H 0.100 0.900 18 C -0.179 4.179 19 N -0.448 5.448 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.194 1.194 23 H -0.176 1.176 24 C -0.212 4.212 25 C -0.131 4.131 26 N -0.134 5.134 27 H 0.169 0.831 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.121 0.879 33 H 0.153 0.847 34 H 0.225 0.775 35 H 0.158 0.842 36 H 0.140 0.860 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.575 10.139 -17.285 24.779 hybrid contribution 0.557 -1.586 2.047 2.649 sum -14.019 8.553 -15.238 22.402 Atomic orbital electron populations 1.30077 1.21115 1.14025 1.13621 1.06949 0.80190 0.73974 0.75885 1.93573 1.81171 1.36228 1.86603 1.93576 1.81128 1.67598 1.54810 1.30743 1.03366 1.16661 1.24783 1.21677 0.94053 1.02126 0.81207 1.48498 1.37929 1.22576 1.06010 1.22982 0.95976 0.90842 0.97601 1.19063 1.07877 1.01315 0.92923 1.17936 0.95980 0.93414 0.92000 1.20584 1.03812 0.97478 0.99303 1.20841 1.02032 1.00661 0.91963 1.18346 1.02878 0.90797 0.90770 1.91258 1.79048 1.59325 1.84390 1.17862 0.91718 0.90568 0.94304 1.19586 0.98442 1.43963 0.92049 0.90010 1.26607 0.93853 0.93027 1.04460 1.69841 0.99684 1.34626 1.40601 0.85278 0.79320 0.78979 0.76717 1.19481 1.19378 1.17641 1.21049 1.07211 0.99397 0.93587 1.24172 0.96069 0.92900 0.99945 1.77078 1.23891 1.23381 0.89086 0.83110 0.83900 0.82893 0.82532 0.83008 0.87894 0.84672 0.77453 0.84238 0.85982 0.90500 0.87140 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.69 10.62 113.37 1.20 0.51 16 2 S 2.45 21.86 5.36 -56.49 -0.30 21.56 16 3 O -0.98 -17.34 18.10 -127.37 -2.30 -19.65 16 4 O -0.97 -15.98 18.10 -127.37 -2.31 -18.28 16 5 C -0.63 -5.72 5.99 71.98 0.43 -5.29 16 6 C 0.13 1.94 6.51 86.38 0.56 2.50 16 7 N -0.37 -8.57 3.67 -347.21 -1.27 -9.84 16 8 C 0.07 1.83 10.83 83.81 0.91 2.73 16 9 C -0.20 -6.60 6.04 -20.33 -0.12 -6.72 16 10 C 0.01 0.33 5.87 -20.08 -0.12 0.21 16 11 C -0.19 -7.45 9.57 22.65 0.22 -7.23 16 12 C -0.14 -6.07 9.99 22.23 0.22 -5.85 16 13 C -0.01 -0.40 6.69 22.91 0.15 -0.25 16 14 F -0.16 -9.15 14.23 44.97 0.64 -8.51 16 15 C 0.06 3.14 5.40 -21.28 -0.11 3.03 16 16 C -0.51 -28.10 8.92 23.43 0.21 -27.89 16 17 H 0.08 4.30 7.92 -2.91 -0.02 4.27 16 18 C 0.04 1.91 4.52 85.25 0.39 2.30 16 19 N -0.82 -45.89 11.08 21.82 0.24 -45.64 16 20 Si 0.98 40.55 29.60 68.60 2.03 42.58 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 23 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 24 C -0.19 -9.02 9.31 22.92 0.21 -8.81 16 25 C 0.06 1.73 11.41 85.50 0.98 2.70 16 26 N -0.31 -8.92 12.38 -56.46 -0.70 -9.62 16 27 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.14 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.15 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.14 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.21 3.69 7.26 -2.91 -0.02 3.67 16 35 H 0.14 4.13 6.99 -2.91 -0.02 4.11 16 36 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 37 H 0.28 14.61 8.30 -92.71 -0.77 13.84 16 38 H 0.11 4.83 7.03 -2.91 -0.02 4.81 16 39 H 0.19 5.48 7.33 -2.91 -0.02 5.46 16 Total: -1.00 -82.21 355.28 2.24 -79.98 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.09 Total: 15.47 kcal Atomic # 6 Polarization: -53.17 SS G_CDS: 5.12 Total: -48.05 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -1.73 Total: -65.11 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -4.61 Total: -37.93 kcal Atomic # 9 Polarization: -9.15 SS G_CDS: 0.64 Total: -8.51 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 21.86 SS G_CDS: -0.30 Total: 21.56 kcal Total: -82.21 2.24 -79.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245478754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.485 kcal (2) G-P(sol) polarization free energy of solvation -82.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds