Wall clock time and date at job start Tue Mar 31 2020 20:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42093 * 108.57598 * 2 1 4 4 O 1.42096 * 108.57788 * 228.97520 * 2 1 3 5 5 C 1.81401 * 101.92050 * 114.49127 * 2 1 3 6 6 C 1.53002 * 109.46880 * 180.02562 * 5 2 1 7 7 N 1.46499 * 109.47006 * 179.97438 * 6 5 2 8 8 C 1.34717 * 125.81193 * 124.99514 * 7 6 5 9 9 C 1.37914 * 107.38023 * 179.97438 * 8 7 6 10 10 C 1.47898 * 126.36823 * 179.97438 * 9 8 7 11 11 C 1.39156 * 120.25117 * 309.71502 * 10 9 8 12 12 C 1.37983 * 120.13247 * 179.76951 * 11 10 9 13 13 C 1.39213 * 120.65121 * 0.51935 * 12 11 10 14 14 F 1.35093 * 119.75138 * 179.76268 * 13 12 11 15 15 C 1.37598 * 120.50500 * 359.74060 * 13 12 11 16 16 C 1.40729 * 119.84394 * 0.02562 * 15 13 12 17 17 C 1.40887 * 120.31595 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00186 * 153.28431 * 17 16 15 19 19 C 1.39989 * 119.99585 * 333.28219 * 17 16 15 20 20 N 1.30828 * 120.00612 * 344.28566 * 19 17 16 21 21 Si 1.86805 * 119.99741 * 164.28548 * 19 17 16 22 22 H 1.48501 * 109.47204 * 60.00414 * 21 19 17 23 23 H 1.48504 * 109.47010 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47236 * 299.99903 * 21 19 17 25 25 C 1.41125 * 107.25334 * 0.02562 * 9 8 7 26 26 N 1.30541 * 108.12031 * 359.75672 * 25 9 8 27 27 H 1.09004 * 109.47315 * 305.50837 * 1 2 3 28 28 H 1.08996 * 109.47226 * 65.51366 * 1 2 3 29 29 H 1.09010 * 109.47111 * 185.51301 * 1 2 3 30 30 H 1.08995 * 109.47285 * 60.00025 * 5 2 1 31 31 H 1.09008 * 109.47081 * 299.99586 * 5 2 1 32 32 H 1.08995 * 109.47336 * 59.99817 * 6 5 2 33 33 H 1.08995 * 109.46969 * 299.99313 * 6 5 2 34 34 H 1.08000 * 126.30927 * 359.97145 * 8 7 6 35 35 H 1.07999 * 119.93203 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.67567 * 180.23912 * 12 11 10 37 37 H 1.08003 * 120.08006 * 180.02562 * 15 13 12 38 38 H 0.96992 * 120.00315 * 179.97438 * 20 19 17 39 39 H 1.07998 * 125.93609 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7358 1.6152 6 6 3.7055 -0.8185 1.7984 7 7 4.0081 -1.4122 3.1030 8 6 4.7843 -2.4923 3.3166 9 6 4.8102 -2.7186 4.6768 10 6 5.5383 -3.8021 5.3719 11 6 5.4026 -5.1211 4.9496 12 6 6.0867 -6.1295 5.5969 13 6 6.9098 -5.8451 6.6830 14 9 7.5674 -6.8471 7.3063 15 6 7.0592 -4.5511 7.1262 16 6 6.3751 -3.5056 6.4785 17 6 6.5212 -2.1769 6.9237 18 1 6.3818 -1.3579 6.2337 19 6 6.8469 -1.9185 8.2604 20 7 6.7166 -2.8601 9.1593 21 14 7.4675 -0.2291 8.7606 22 1 6.4384 0.7918 8.4384 23 1 7.7390 -0.2138 10.2206 24 1 8.7180 0.0779 8.0209 25 6 4.0119 -1.7244 5.2818 26 7 3.5440 -0.9508 4.3401 27 1 -0.3634 0.5969 0.8366 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3634 -1.0230 0.0987 30 1 1.7610 -1.7370 1.6664 31 1 1.7610 -0.1172 2.4043 32 1 4.1328 0.1829 1.7473 33 1 4.1335 -1.4369 1.0094 34 1 5.2925 -3.0740 2.5618 35 1 4.7639 -5.3554 4.1109 36 1 5.9791 -7.1501 5.2605 37 1 7.6998 -4.3381 7.9692 38 1 6.9426 -2.6811 10.0854 39 1 3.8239 -1.6197 6.3401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245480900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:19 Heat of formation + Delta-G solvation = -20.743782 kcal Electronic energy + Delta-G solvation = -25839.442655 eV Core-core repulsion = 21790.518733 eV Total energy + Delta-G solvation = -4048.923921 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -47.65647 -40.54395 -37.36259 -37.35133 -36.42834 -34.56682 -33.78282 -30.78207 -30.39476 -29.94607 -29.63834 -27.32193 -25.41665 -24.18854 -21.69553 -21.25608 -20.04451 -19.41922 -19.20327 -17.64953 -17.37238 -16.64550 -16.41209 -16.20659 -15.88665 -15.17928 -14.93466 -14.64795 -14.34060 -14.29653 -14.05889 -13.75664 -13.63246 -13.58487 -12.99593 -12.78503 -12.64087 -12.46509 -12.36844 -12.28689 -12.01467 -11.84128 -11.63761 -11.51022 -11.39375 -11.17370 -11.04810 -10.75695 -10.48838 -10.33171 -9.87307 -9.67084 -9.29702 -8.92754 -8.07881 -7.62310 -7.07792 -6.80160 -4.51259 -0.47218 2.20252 2.29020 2.60596 2.73142 2.78674 3.01711 3.04606 3.12962 3.24665 3.60652 3.61773 3.84041 4.11839 4.26861 4.35704 4.45453 4.53151 4.80128 5.05108 5.20618 5.30299 5.40189 5.47992 5.63177 5.66128 6.08596 6.22819 6.32442 6.45539 6.56463 6.90467 6.94447 7.13285 7.21324 7.42933 7.46227 7.64806 7.75713 7.87339 8.12935 8.26649 8.45499 8.70951 8.76717 10.02766 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.002859 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.555287 B = 9791.559555 C =11375.626849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.429 3.571 3 O -0.935 6.935 4 O -0.937 6.937 5 C -0.629 4.629 6 C 0.158 3.842 7 N -0.382 5.382 8 C 0.024 3.976 9 C -0.123 4.123 10 C -0.146 4.146 11 C -0.053 4.053 12 C -0.277 4.277 13 C 0.104 3.896 14 F -0.169 7.169 15 C -0.196 4.196 16 C 0.145 3.855 17 C -0.443 4.443 18 H 0.086 0.914 19 C 0.076 3.924 20 N -0.784 5.784 21 Si 0.907 3.093 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.263 1.263 25 C 0.080 3.920 26 N -0.317 5.317 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.146 0.854 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.169 0.831 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.285 0.715 39 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 4.749 -12.484 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.609 3.391 3 O -0.932 6.932 4 O -0.935 6.935 5 C -0.757 4.757 6 C 0.034 3.966 7 N -0.166 5.166 8 C -0.120 4.120 9 C -0.134 4.134 10 C -0.148 4.148 11 C -0.071 4.071 12 C -0.297 4.297 13 C 0.085 3.915 14 F -0.148 7.148 15 C -0.216 4.216 16 C 0.142 3.858 17 C -0.471 4.471 18 H 0.104 0.896 19 C -0.144 4.144 20 N -0.408 5.408 21 Si 0.731 3.269 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.107 4.107 26 N -0.137 5.137 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.186 0.814 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.352 6.044 -13.246 17.864 hybrid contribution 0.227 -0.574 1.347 1.481 sum -10.124 5.470 -11.899 16.553 Atomic orbital electron populations 1.30232 1.26293 1.11794 1.11928 1.07640 0.78587 0.75749 0.77103 1.93623 1.79031 1.34279 1.86272 1.93617 1.79122 1.67071 1.53640 1.30765 1.05676 1.15185 1.24118 1.21034 0.91262 1.01180 0.83127 1.47914 1.40165 1.23505 1.04997 1.22870 0.98982 0.92035 0.98068 1.19084 1.03901 1.00044 0.90359 1.17957 1.03961 0.90116 1.02811 1.20347 0.97362 0.91834 0.97602 1.20168 1.08656 0.98544 1.02363 1.17762 0.95307 0.84718 0.93735 1.91329 1.80042 1.61098 1.82293 1.21220 1.05552 0.90056 1.04791 1.17259 0.87012 0.92842 0.88683 1.19510 1.40164 0.93080 0.94362 0.89627 1.25987 0.92723 0.99111 0.96549 1.69795 1.33325 1.34436 1.03219 0.86359 0.80563 0.82013 0.77931 1.18699 1.20227 1.18707 1.24129 0.95053 0.92573 0.98926 1.76964 1.24520 1.23773 0.88468 0.85117 0.85124 0.85206 0.84412 0.83536 0.88754 0.87626 0.81413 0.88486 0.88306 0.85358 0.90413 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.25 10.62 101.05 1.07 -1.18 16 2 S 2.43 16.24 5.36 -107.50 -0.58 15.66 16 3 O -0.93 -9.91 18.10 -57.83 -1.05 -10.96 16 4 O -0.94 -9.48 18.10 -57.83 -1.05 -10.52 16 5 C -0.63 -4.74 5.99 37.16 0.22 -4.52 16 6 C 0.16 1.69 6.50 -4.04 -0.03 1.67 16 7 N -0.38 -5.84 3.66 -60.73 -0.22 -6.06 16 8 C 0.02 0.39 11.40 -16.40 -0.19 0.21 16 9 C -0.12 -2.43 4.96 -104.97 -0.52 -2.95 16 10 C -0.15 -3.23 5.82 -104.21 -0.61 -3.84 16 11 C -0.05 -1.10 9.69 -39.33 -0.38 -1.48 16 12 C -0.28 -6.05 10.01 -39.31 -0.39 -6.44 16 13 C 0.10 2.49 7.28 -39.45 -0.29 2.20 16 14 F -0.17 -3.93 17.26 2.25 0.04 -3.89 16 15 C -0.20 -4.95 8.63 -38.87 -0.34 -5.28 16 16 C 0.15 3.57 5.57 -106.57 -0.59 2.98 16 17 C -0.44 -10.73 7.73 -37.92 -0.29 -11.03 16 18 H 0.09 2.05 6.70 -52.49 -0.35 1.70 16 19 C 0.08 1.78 5.17 -17.32 -0.09 1.69 16 20 N -0.78 -19.11 10.98 55.55 0.61 -18.50 16 21 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 C 0.08 1.54 10.37 -17.01 -0.18 1.36 16 26 N -0.32 -5.62 12.35 30.84 0.38 -5.24 16 27 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 28 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.15 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 0.88 8.06 -51.93 -0.42 0.47 16 34 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 35 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 37 H 0.13 3.38 6.24 -52.48 -0.33 3.05 16 38 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 39 H 0.19 3.56 7.95 -52.49 -0.42 3.14 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -33.49 356.71 -8.56 -42.05 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -4.45 Total: 5.86 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.59 Total: -26.61 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.77 Total: -29.81 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -2.09 Total: -21.48 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.04 Total: -3.89 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 16.24 SS G_CDS: -0.58 Total: 15.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.49 -8.56 -42.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245480900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.310 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds