Wall clock time and date at job start Tue Mar 31 2020 20:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42093 * 108.57598 * 2 1 4 4 O 1.42096 * 108.57788 * 228.97520 * 2 1 3 5 5 C 1.81401 * 101.92050 * 114.49127 * 2 1 3 6 6 C 1.53002 * 109.46880 * 180.02562 * 5 2 1 7 7 N 1.46499 * 109.47006 * 179.97438 * 6 5 2 8 8 C 1.34717 * 125.81193 * 124.99514 * 7 6 5 9 9 C 1.37914 * 107.38023 * 179.97438 * 8 7 6 10 10 C 1.47898 * 126.36823 * 179.97438 * 9 8 7 11 11 C 1.39156 * 120.25117 * 309.71502 * 10 9 8 12 12 C 1.37983 * 120.13247 * 179.76951 * 11 10 9 13 13 C 1.39213 * 120.65121 * 0.51935 * 12 11 10 14 14 F 1.35093 * 119.75138 * 179.76268 * 13 12 11 15 15 C 1.37598 * 120.50500 * 359.74060 * 13 12 11 16 16 C 1.40729 * 119.84394 * 0.02562 * 15 13 12 17 17 C 1.40887 * 120.31595 * 180.02562 * 16 15 13 18 18 H 1.07993 * 120.00186 * 153.28431 * 17 16 15 19 19 C 1.39989 * 119.99585 * 333.28219 * 17 16 15 20 20 N 1.30828 * 120.00612 * 344.28566 * 19 17 16 21 21 Si 1.86805 * 119.99741 * 164.28548 * 19 17 16 22 22 H 1.48501 * 109.47204 * 60.00414 * 21 19 17 23 23 H 1.48504 * 109.47010 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47236 * 299.99903 * 21 19 17 25 25 C 1.41125 * 107.25334 * 0.02562 * 9 8 7 26 26 N 1.30541 * 108.12031 * 359.75672 * 25 9 8 27 27 H 1.09004 * 109.47315 * 305.50837 * 1 2 3 28 28 H 1.08996 * 109.47226 * 65.51366 * 1 2 3 29 29 H 1.09010 * 109.47111 * 185.51301 * 1 2 3 30 30 H 1.08995 * 109.47285 * 60.00025 * 5 2 1 31 31 H 1.09008 * 109.47081 * 299.99586 * 5 2 1 32 32 H 1.08995 * 109.47336 * 59.99817 * 6 5 2 33 33 H 1.08995 * 109.46969 * 299.99313 * 6 5 2 34 34 H 1.08000 * 126.30927 * 359.97145 * 8 7 6 35 35 H 1.07999 * 119.93203 * 0.02562 * 11 10 9 36 36 H 1.07996 * 119.67567 * 180.23912 * 12 11 10 37 37 H 1.08003 * 120.08006 * 180.02562 * 15 13 12 38 38 H 0.96992 * 120.00315 * 179.97438 * 20 19 17 39 39 H 1.07998 * 125.93609 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7358 1.6152 6 6 3.7055 -0.8185 1.7984 7 7 4.0081 -1.4122 3.1030 8 6 4.7843 -2.4923 3.3166 9 6 4.8102 -2.7186 4.6768 10 6 5.5383 -3.8021 5.3719 11 6 5.4026 -5.1211 4.9496 12 6 6.0867 -6.1295 5.5969 13 6 6.9098 -5.8451 6.6830 14 9 7.5674 -6.8471 7.3063 15 6 7.0592 -4.5511 7.1262 16 6 6.3751 -3.5056 6.4785 17 6 6.5212 -2.1769 6.9237 18 1 6.3818 -1.3579 6.2337 19 6 6.8469 -1.9185 8.2604 20 7 6.7166 -2.8601 9.1593 21 14 7.4675 -0.2291 8.7606 22 1 6.4384 0.7918 8.4384 23 1 7.7390 -0.2138 10.2206 24 1 8.7180 0.0779 8.0209 25 6 4.0119 -1.7244 5.2818 26 7 3.5440 -0.9508 4.3401 27 1 -0.3634 0.5969 0.8366 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3634 -1.0230 0.0987 30 1 1.7610 -1.7370 1.6664 31 1 1.7610 -0.1172 2.4043 32 1 4.1328 0.1829 1.7473 33 1 4.1335 -1.4369 1.0094 34 1 5.2925 -3.0740 2.5618 35 1 4.7639 -5.3554 4.1109 36 1 5.9791 -7.1501 5.2605 37 1 7.6998 -4.3381 7.9692 38 1 6.9426 -2.6811 10.0854 39 1 3.8239 -1.6197 6.3401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245480900.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:18 Heat of formation + Delta-G solvation = -42.839748 kcal Electronic energy + Delta-G solvation = -25840.400808 eV Core-core repulsion = 21790.518733 eV Total energy + Delta-G solvation = -4049.882074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.50728 -41.89055 -39.07074 -38.02524 -37.09534 -35.58071 -35.52018 -32.33512 -31.67402 -31.23476 -30.31015 -28.83214 -27.15901 -25.18315 -23.29801 -22.96029 -21.32446 -20.89414 -19.80874 -19.41529 -18.33420 -17.70430 -17.36584 -17.14789 -16.95738 -16.65306 -16.38367 -16.17698 -16.14592 -15.67008 -15.21018 -14.82822 -14.66566 -14.29788 -14.04444 -13.91544 -13.90364 -13.78107 -13.44591 -13.30139 -13.15229 -13.06386 -13.04188 -12.79808 -12.69207 -12.39101 -12.14222 -12.10097 -11.98757 -11.64744 -11.46484 -11.32855 -11.05689 -10.23738 -9.62840 -9.42106 -8.78616 -8.48919 -6.33637 -0.99611 0.65738 0.97045 1.10616 1.38783 1.48064 1.51662 1.66151 1.82120 2.08610 2.18956 2.67304 2.69828 3.11028 3.39572 3.61019 3.66226 3.87193 3.97944 4.13247 4.14717 4.19402 4.25393 4.45426 4.46671 4.60241 4.73333 4.84923 4.94374 5.01161 5.02908 5.15672 5.21321 5.38555 5.68411 5.71396 5.85021 6.01362 6.07201 6.23335 6.35322 6.64264 6.86965 6.92125 6.97350 8.29490 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.002859 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.555287 B = 9791.559555 C =11375.626849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.449 3.551 3 O -0.980 6.980 4 O -0.974 6.974 5 C -0.627 4.627 6 C 0.133 3.867 7 N -0.369 5.369 8 C 0.049 3.951 9 C -0.164 4.164 10 C -0.138 4.138 11 C -0.052 4.052 12 C -0.272 4.272 13 C 0.085 3.915 14 F -0.170 7.170 15 C -0.224 4.224 16 C 0.118 3.882 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.040 3.960 20 N -0.818 5.818 21 Si 0.970 3.030 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.263 1.263 25 C 0.064 3.936 26 N -0.324 5.324 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.097 0.903 33 H 0.133 0.867 34 H 0.203 0.797 35 H 0.135 0.865 36 H 0.125 0.875 37 H 0.106 0.894 38 H 0.289 0.711 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.169 5.098 -14.953 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.633 3.367 3 O -0.977 6.977 4 O -0.971 6.971 5 C -0.754 4.754 6 C 0.012 3.988 7 N -0.152 5.152 8 C -0.097 4.097 9 C -0.175 4.175 10 C -0.140 4.140 11 C -0.070 4.070 12 C -0.292 4.292 13 C 0.066 3.934 14 F -0.150 7.150 15 C -0.244 4.244 16 C 0.115 3.885 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.176 4.176 20 N -0.444 5.444 21 Si 0.792 3.208 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.188 1.188 25 C -0.121 4.121 26 N -0.145 5.145 27 H 0.168 0.832 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.174 0.826 31 H 0.167 0.833 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.220 0.780 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.100 0.900 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -12.271 6.403 -15.723 20.947 hybrid contribution 0.689 -0.702 1.923 2.160 sum -11.582 5.701 -13.800 18.897 Atomic orbital electron populations 1.30070 1.21126 1.14005 1.13552 1.06875 0.80139 0.73917 0.75773 1.93568 1.81195 1.36321 1.86597 1.93568 1.81137 1.67598 1.54773 1.30739 1.03343 1.16579 1.24751 1.21589 0.94020 1.01800 0.81413 1.48296 1.38504 1.22646 1.05718 1.23273 0.97391 0.91674 0.97399 1.19041 1.05863 1.00759 0.91864 1.18254 1.02471 0.91700 1.01597 1.20720 0.97167 0.90858 0.98275 1.20508 1.07347 1.00202 1.01116 1.18000 0.96289 0.84330 0.94754 1.91312 1.80208 1.60918 1.82515 1.21141 1.06739 0.91278 1.05274 1.17582 0.87856 0.92955 0.90080 1.19581 1.41553 0.93002 0.94868 0.90073 1.26690 0.92395 1.02304 0.96246 1.69859 1.34565 1.36287 1.03639 0.85411 0.79738 0.77845 0.77818 1.18351 1.19366 1.18800 1.23947 0.96099 0.93261 0.98835 1.76911 1.24832 1.23591 0.89207 0.83228 0.83876 0.82865 0.82553 0.83286 0.88449 0.84919 0.78032 0.84753 0.85736 0.87653 0.90023 0.81230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.75 10.62 113.37 1.20 -0.55 16 2 S 2.45 26.87 5.36 -56.49 -0.30 26.56 16 3 O -0.98 -19.51 18.10 -127.37 -2.30 -21.81 16 4 O -0.97 -17.64 18.10 -127.37 -2.30 -19.95 16 5 C -0.63 -7.59 5.99 71.98 0.43 -7.16 16 6 C 0.13 2.50 6.50 86.38 0.56 3.06 16 7 N -0.37 -10.37 3.66 -346.05 -1.27 -11.64 16 8 C 0.05 1.47 11.40 84.17 0.96 2.43 16 9 C -0.16 -6.32 4.96 -20.09 -0.10 -6.42 16 10 C -0.14 -6.07 5.82 -19.60 -0.11 -6.18 16 11 C -0.05 -2.06 9.69 22.43 0.22 -1.84 16 12 C -0.27 -11.50 10.01 22.44 0.22 -11.28 16 13 C 0.09 4.15 7.28 22.35 0.16 4.31 16 14 F -0.17 -8.09 17.26 44.97 0.78 -7.31 16 15 C -0.22 -11.79 8.63 22.73 0.20 -11.59 16 16 C 0.12 6.01 5.57 -21.12 -0.12 5.89 16 17 C -0.46 -23.23 7.73 23.34 0.18 -23.05 16 18 H 0.08 4.04 6.70 -2.91 -0.02 4.02 16 19 C 0.04 1.94 5.17 85.27 0.44 2.38 16 20 N -0.82 -41.78 10.98 21.84 0.24 -41.54 16 21 Si 0.97 37.63 29.59 68.60 2.03 39.66 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 25 C 0.06 2.47 10.37 85.59 0.89 3.36 16 26 N -0.32 -11.14 12.35 -56.34 -0.70 -11.83 16 27 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 28 H 0.14 0.21 8.14 -2.39 -0.02 0.20 16 29 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 30 H 0.16 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.13 1.77 8.06 -2.39 -0.02 1.75 16 34 H 0.20 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 36 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 37 H 0.11 5.92 6.24 -2.91 -0.02 5.90 16 38 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 39 H 0.17 6.88 7.95 -2.91 -0.02 6.86 16 Total: -1.00 -75.25 356.71 2.39 -72.86 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 1.08 Total: 21.65 kcal Atomic # 6 Polarization: -51.79 SS G_CDS: 5.13 Total: -46.65 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -1.72 Total: -65.02 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -4.61 Total: -41.76 kcal Atomic # 9 Polarization: -8.09 SS G_CDS: 0.78 Total: -7.31 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 16 Polarization: 26.87 SS G_CDS: -0.30 Total: 26.56 kcal Total: -75.25 2.39 -72.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245480900.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.023 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds