Wall clock time and date at job start Tue Mar 31 2020 20:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 108.58115 * 2 1 4 4 O 1.42100 * 108.57930 * 228.97350 * 2 1 3 5 5 C 1.81403 * 101.92481 * 114.48714 * 2 1 3 6 6 C 1.52990 * 109.47429 * 180.02562 * 5 2 1 7 7 N 1.46497 * 109.47367 * 179.97438 * 6 5 2 8 8 C 1.34858 * 125.89836 * 125.25371 * 7 6 5 9 9 C 1.36426 * 107.60494 * 180.14684 * 8 7 6 10 10 C 1.48495 * 126.21913 * 179.87556 * 9 8 7 11 11 C 1.38593 * 120.00733 * 129.44220 * 10 9 8 12 12 C 1.40571 * 119.65979 * 179.80097 * 11 10 9 13 13 C 1.41339 * 120.15819 * 180.21174 * 12 11 10 14 14 H 1.08003 * 119.99654 * 330.40818 * 13 12 11 15 15 C 1.39887 * 120.00003 * 150.40871 * 13 12 11 16 16 N 1.30866 * 119.99842 * 161.71754 * 15 13 12 17 17 Si 1.86797 * 120.00185 * 341.72232 * 15 13 12 18 18 H 1.48503 * 109.46902 * 95.41636 * 17 15 13 19 19 H 1.48501 * 109.47240 * 215.41531 * 17 15 13 20 20 H 1.48497 * 109.47257 * 335.41631 * 17 15 13 21 21 C 1.40845 * 119.68234 * 0.44950 * 12 11 10 22 22 C 1.37568 * 120.00853 * 359.80215 * 21 12 11 23 23 C 1.38752 * 120.34346 * 359.97079 * 22 21 12 24 24 F 1.35103 * 119.83916 * 179.97438 * 23 22 21 25 25 C 1.40840 * 107.56459 * 359.61790 * 9 8 7 26 26 N 1.30681 * 108.09880 * 0.23692 * 25 9 8 27 27 H 1.09002 * 109.46953 * 305.51238 * 1 2 3 28 28 H 1.09001 * 109.46840 * 65.50963 * 1 2 3 29 29 H 1.08994 * 109.47267 * 185.51398 * 1 2 3 30 30 H 1.08997 * 109.47073 * 59.99554 * 5 2 1 31 31 H 1.09008 * 109.46695 * 300.00055 * 5 2 1 32 32 H 1.08997 * 109.47409 * 59.99696 * 6 5 2 33 33 H 1.09008 * 109.47176 * 299.99697 * 6 5 2 34 34 H 1.07995 * 126.19846 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.17310 * 0.02562 * 11 10 9 36 36 H 0.96996 * 120.00353 * 179.97438 * 16 15 13 37 37 H 1.07992 * 119.99477 * 179.77746 * 21 12 11 38 38 H 1.08002 * 119.82996 * 179.97438 * 22 21 12 39 39 H 1.07994 * 125.95359 * 180.25960 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1888 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 7 4.0081 -1.4119 3.1031 8 6 4.7888 -2.4901 3.3194 9 6 4.8118 -2.7199 4.6640 10 6 5.5457 -3.8100 5.3554 11 6 6.3693 -3.5175 6.4310 12 6 7.0573 -4.5557 7.0828 13 6 7.8965 -4.2698 8.1835 14 1 8.3947 -3.3138 8.2488 15 6 8.0819 -5.2252 9.1884 16 7 9.1021 -5.1292 10.0024 17 14 6.8733 -6.6381 9.3683 18 1 7.3913 -7.8276 8.6457 19 1 6.7064 -6.9667 10.8068 20 1 5.5614 -6.2433 8.7953 21 6 6.9103 -5.8814 6.6305 22 6 6.0933 -6.1560 5.5583 23 6 5.4102 -5.1324 4.9174 24 9 4.6109 -5.4136 3.8650 25 6 4.0178 -1.7316 5.2777 26 7 3.5412 -0.9545 4.3413 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9352 29 1 -0.3633 -1.0228 0.0987 30 1 1.7611 -1.7369 1.6665 31 1 1.7611 -0.1170 2.4043 32 1 4.1328 0.1830 1.7473 33 1 4.1336 -1.4368 1.0094 34 1 5.3012 -3.0682 2.5647 35 1 6.4792 -2.4976 6.7689 36 1 9.2304 -5.7914 10.6994 37 1 7.4393 -6.6824 7.1253 38 1 5.9830 -7.1736 5.2137 39 1 3.8350 -1.6330 6.3374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245481782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:39 Heat of formation + Delta-G solvation = -17.054086 kcal Electronic energy + Delta-G solvation = -25637.291642 eV Core-core repulsion = 21588.527718 eV Total energy + Delta-G solvation = -4048.763924 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -47.66552 -40.98485 -37.63026 -37.46731 -36.53564 -34.92435 -33.64420 -31.46285 -30.64428 -30.13133 -30.00988 -27.93885 -24.93293 -24.48328 -22.37773 -21.21080 -20.28473 -19.99222 -19.34837 -17.85030 -17.27043 -16.79586 -16.65931 -16.49730 -16.11779 -15.39716 -15.33214 -14.90906 -14.46836 -14.40627 -14.03756 -13.88641 -13.74193 -13.71587 -13.14431 -13.02832 -12.81523 -12.69805 -12.56929 -12.47789 -12.44810 -12.06596 -11.95085 -11.78007 -11.61335 -11.21285 -11.03740 -10.77661 -10.49451 -10.32850 -10.21589 -9.68467 -9.32521 -9.25412 -8.61231 -7.73711 -7.33930 -7.05136 -4.57120 -0.58713 1.87393 2.17287 2.29496 2.39890 2.46108 3.03290 3.10742 3.14254 3.17379 3.26869 3.50214 3.89817 3.93342 4.12347 4.27406 4.30836 4.41224 4.63116 4.83370 5.02495 5.12602 5.16030 5.23573 5.27726 5.51898 5.63739 5.77917 5.93789 6.14339 6.35670 6.52446 6.69214 6.78073 6.97181 7.07150 7.21898 7.36681 7.45861 7.70125 7.81330 7.96165 8.23003 8.49563 8.67219 9.96762 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.002269 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.399636 B =12336.968402 C =12766.320416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.428 3.572 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.632 4.632 6 C 0.155 3.845 7 N -0.378 5.378 8 C 0.066 3.934 9 C -0.172 4.172 10 C -0.007 4.007 11 C -0.170 4.170 12 C 0.086 3.914 13 C -0.440 4.440 14 H 0.094 0.906 15 C 0.083 3.917 16 N -0.802 5.802 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.289 1.289 20 H -0.242 1.242 21 C -0.219 4.219 22 C -0.101 4.101 23 C -0.037 4.037 24 F -0.168 7.168 25 C 0.070 3.930 26 N -0.304 5.304 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.175 0.825 35 H 0.111 0.889 36 H 0.287 0.713 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.590 6.576 -14.327 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.609 3.391 3 O -0.931 6.931 4 O -0.932 6.932 5 C -0.760 4.760 6 C 0.031 3.969 7 N -0.160 5.160 8 C -0.078 4.078 9 C -0.183 4.183 10 C -0.009 4.009 11 C -0.190 4.190 12 C 0.083 3.917 13 C -0.468 4.468 14 H 0.111 0.889 15 C -0.136 4.136 16 N -0.426 5.426 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.217 1.217 20 H -0.165 1.165 21 C -0.238 4.238 22 C -0.120 4.120 23 C -0.057 4.057 24 F -0.147 7.147 25 C -0.117 4.117 26 N -0.125 5.125 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.192 0.808 35 H 0.129 0.871 36 H 0.097 0.903 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.603 7.911 -15.184 22.503 hybrid contribution -0.609 -1.852 0.940 2.164 sum -15.212 6.060 -14.243 21.702 Atomic orbital electron populations 1.30222 1.26019 1.11891 1.12046 1.07666 0.78728 0.75757 0.76992 1.93629 1.79095 1.34179 1.86187 1.93628 1.79148 1.67041 1.53408 1.30781 1.05255 1.15422 1.24547 1.21145 0.91704 1.01390 0.82636 1.48151 1.39011 1.23530 1.05353 1.22580 0.96621 0.90680 0.97951 1.18962 1.06764 1.00886 0.91701 1.17695 0.97941 0.88873 0.96357 1.20929 1.00480 0.98875 0.98708 1.17688 0.90373 0.90824 0.92864 1.19471 1.21985 1.02500 1.02870 0.88851 1.26177 0.94658 0.98128 0.94673 1.69705 1.24082 1.34091 1.14719 0.86338 0.83107 0.80326 0.76696 1.19517 1.21656 1.16549 1.20917 1.05623 0.97256 0.99991 1.20501 0.97696 0.96847 0.97003 1.17176 1.02685 0.93010 0.92862 1.91285 1.72997 1.94463 1.55940 1.24048 0.95763 0.92573 0.99296 1.77101 1.23601 1.23411 0.88355 0.85071 0.84979 0.85129 0.84249 0.83476 0.88310 0.87212 0.80798 0.87066 0.90272 0.87416 0.87573 0.79640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.79 10.62 101.05 1.07 -0.72 16 2 S 2.43 14.39 5.36 -107.50 -0.58 13.82 16 3 O -0.93 -9.05 18.10 -57.83 -1.05 -10.10 16 4 O -0.94 -8.92 18.10 -57.83 -1.05 -9.96 16 5 C -0.63 -4.11 5.99 37.15 0.22 -3.89 16 6 C 0.15 1.45 6.51 -4.05 -0.03 1.43 16 7 N -0.38 -5.16 3.67 -61.10 -0.22 -5.38 16 8 C 0.07 1.01 10.78 -16.88 -0.18 0.83 16 9 C -0.17 -3.05 5.36 -105.34 -0.56 -3.62 16 10 C -0.01 -0.13 5.75 -104.89 -0.60 -0.74 16 11 C -0.17 -3.72 9.45 -38.57 -0.36 -4.08 16 12 C 0.09 2.04 5.10 -106.85 -0.55 1.50 16 13 C -0.44 -11.22 9.56 -37.79 -0.36 -11.58 16 14 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 15 C 0.08 2.08 5.40 -17.35 -0.09 1.98 16 16 N -0.80 -20.45 13.93 55.54 0.77 -19.68 16 17 Si 0.91 19.74 24.51 -169.99 -4.17 15.57 16 18 H -0.27 -5.66 6.70 56.52 0.38 -5.28 16 19 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.24 -5.38 6.86 56.52 0.39 -4.99 16 21 C -0.22 -4.99 7.16 -38.84 -0.28 -5.27 16 22 C -0.10 -2.15 9.99 -39.64 -0.40 -2.55 16 23 C -0.04 -0.78 7.26 -38.75 -0.28 -1.07 16 24 F -0.17 -3.35 16.34 2.25 0.04 -3.31 16 25 C 0.07 1.13 11.93 -17.06 -0.20 0.93 16 26 N -0.30 -4.67 12.38 30.80 0.38 -4.29 16 27 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.13 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.15 0.88 8.14 -51.92 -0.42 0.46 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 0.80 8.07 -51.92 -0.42 0.38 16 34 H 0.17 2.32 8.06 -52.49 -0.42 1.89 16 35 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 36 H 0.29 6.61 8.30 -40.82 -0.34 6.27 16 37 H 0.11 2.44 4.72 -52.49 -0.25 2.19 16 38 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -34.15 354.15 -7.62 -41.77 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -4.49 Total: 3.08 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -2.60 Total: -26.84 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: 0.93 Total: -29.36 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -2.09 Total: -20.06 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.17 Total: 15.57 kcal Atomic # 16 Polarization: 14.39 SS G_CDS: -0.58 Total: 13.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.15 -7.62 -41.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245481782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.715 kcal (2) G-P(sol) polarization free energy of solvation -34.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds