Wall clock time and date at job start Tue Mar 31 2020 20:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 108.58115 * 2 1 4 4 O 1.42100 * 108.57930 * 228.97350 * 2 1 3 5 5 C 1.81403 * 101.92481 * 114.48714 * 2 1 3 6 6 C 1.52990 * 109.47429 * 180.02562 * 5 2 1 7 7 N 1.46497 * 109.47367 * 179.97438 * 6 5 2 8 8 C 1.34858 * 125.89836 * 125.25371 * 7 6 5 9 9 C 1.36426 * 107.60494 * 180.14684 * 8 7 6 10 10 C 1.48495 * 126.21913 * 179.87556 * 9 8 7 11 11 C 1.38593 * 120.00733 * 129.44220 * 10 9 8 12 12 C 1.40571 * 119.65979 * 179.80097 * 11 10 9 13 13 C 1.41339 * 120.15819 * 180.21174 * 12 11 10 14 14 H 1.08003 * 119.99654 * 330.40818 * 13 12 11 15 15 C 1.39887 * 120.00003 * 150.40871 * 13 12 11 16 16 N 1.30866 * 119.99842 * 161.71754 * 15 13 12 17 17 Si 1.86797 * 120.00185 * 341.72232 * 15 13 12 18 18 H 1.48503 * 109.46902 * 95.41636 * 17 15 13 19 19 H 1.48501 * 109.47240 * 215.41531 * 17 15 13 20 20 H 1.48497 * 109.47257 * 335.41631 * 17 15 13 21 21 C 1.40845 * 119.68234 * 0.44950 * 12 11 10 22 22 C 1.37568 * 120.00853 * 359.80215 * 21 12 11 23 23 C 1.38752 * 120.34346 * 359.97079 * 22 21 12 24 24 F 1.35103 * 119.83916 * 179.97438 * 23 22 21 25 25 C 1.40840 * 107.56459 * 359.61790 * 9 8 7 26 26 N 1.30681 * 108.09880 * 0.23692 * 25 9 8 27 27 H 1.09002 * 109.46953 * 305.51238 * 1 2 3 28 28 H 1.09001 * 109.46840 * 65.50963 * 1 2 3 29 29 H 1.08994 * 109.47267 * 185.51398 * 1 2 3 30 30 H 1.08997 * 109.47073 * 59.99554 * 5 2 1 31 31 H 1.09008 * 109.46695 * 300.00055 * 5 2 1 32 32 H 1.08997 * 109.47409 * 59.99696 * 6 5 2 33 33 H 1.09008 * 109.47176 * 299.99697 * 6 5 2 34 34 H 1.07995 * 126.19846 * 0.02562 * 8 7 6 35 35 H 1.07998 * 120.17310 * 0.02562 * 11 10 9 36 36 H 0.96996 * 120.00353 * 179.97438 * 16 15 13 37 37 H 1.07992 * 119.99477 * 179.77746 * 21 12 11 38 38 H 1.08002 * 119.82996 * 179.97438 * 22 21 12 39 39 H 1.07994 * 125.95359 * 180.25960 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1888 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 7 4.0081 -1.4119 3.1031 8 6 4.7888 -2.4901 3.3194 9 6 4.8118 -2.7199 4.6640 10 6 5.5457 -3.8100 5.3554 11 6 6.3693 -3.5175 6.4310 12 6 7.0573 -4.5557 7.0828 13 6 7.8965 -4.2698 8.1835 14 1 8.3947 -3.3138 8.2488 15 6 8.0819 -5.2252 9.1884 16 7 9.1021 -5.1292 10.0024 17 14 6.8733 -6.6381 9.3683 18 1 7.3913 -7.8276 8.6457 19 1 6.7064 -6.9667 10.8068 20 1 5.5614 -6.2433 8.7953 21 6 6.9103 -5.8814 6.6305 22 6 6.0933 -6.1560 5.5583 23 6 5.4102 -5.1324 4.9174 24 9 4.6109 -5.4136 3.8650 25 6 4.0178 -1.7316 5.2777 26 7 3.5412 -0.9545 4.3413 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9352 29 1 -0.3633 -1.0228 0.0987 30 1 1.7611 -1.7369 1.6665 31 1 1.7611 -0.1170 2.4043 32 1 4.1328 0.1830 1.7473 33 1 4.1336 -1.4368 1.0094 34 1 5.3012 -3.0682 2.5647 35 1 6.4792 -2.4976 6.7689 36 1 9.2304 -5.7914 10.6994 37 1 7.4393 -6.6824 7.1253 38 1 5.9830 -7.1736 5.2137 39 1 3.8350 -1.6330 6.3374 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245481782.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:38 Heat of formation + Delta-G solvation = -40.666062 kcal Electronic energy + Delta-G solvation = -25638.315534 eV Core-core repulsion = 21588.527718 eV Total energy + Delta-G solvation = -4049.787816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.32314 -42.17447 -39.34859 -38.07277 -37.14461 -35.90773 -35.35315 -32.96649 -31.91628 -31.54605 -30.38301 -29.27138 -26.74465 -25.35164 -23.91830 -22.74522 -21.53584 -21.41297 -19.86414 -19.34249 -18.42451 -18.14283 -17.42820 -17.21144 -17.03890 -16.97966 -16.58565 -16.18912 -16.04176 -15.55315 -15.29636 -14.95487 -14.89922 -14.49616 -14.21660 -14.10165 -13.94374 -13.92189 -13.72889 -13.63591 -13.45062 -13.19706 -13.09967 -12.81233 -12.66138 -12.43887 -12.20604 -12.12176 -11.93074 -11.80289 -11.69109 -11.44145 -10.99896 -10.46805 -10.06997 -9.46402 -8.90288 -8.88798 -6.48492 -1.05152 0.44094 0.64942 0.90442 1.29646 1.42571 1.45410 1.51836 1.76294 1.81247 2.13762 2.53138 2.61096 3.05800 3.27891 3.39859 3.53644 3.78334 3.81408 3.94460 4.05067 4.10625 4.16958 4.19314 4.25736 4.35330 4.61021 4.64641 4.77122 4.77969 4.85374 4.98360 5.02165 5.22134 5.47171 5.52068 5.67917 5.70910 5.86524 5.94177 6.20086 6.34455 6.61450 6.68290 6.79365 8.17632 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.002269 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.399636 B =12336.968402 C =12766.320416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.633 4.633 2 S 2.445 3.555 3 O -0.977 6.977 4 O -0.975 6.975 5 C -0.628 4.628 6 C 0.130 3.870 7 N -0.367 5.367 8 C 0.077 3.923 9 C -0.211 4.211 10 C 0.004 3.996 11 C -0.178 4.178 12 C 0.072 3.928 13 C -0.474 4.474 14 H 0.062 0.938 15 C 0.049 3.951 16 N -0.843 5.843 17 Si 0.960 3.040 18 H -0.255 1.255 19 H -0.278 1.278 20 H -0.250 1.250 21 C -0.228 4.228 22 C -0.103 4.103 23 C -0.030 4.030 24 F -0.158 7.158 25 C 0.062 3.938 26 N -0.309 5.309 27 H 0.152 0.848 28 H 0.144 0.856 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.195 0.805 35 H 0.112 0.888 36 H 0.295 0.705 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.508 5.861 -16.331 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.630 3.370 3 O -0.974 6.974 4 O -0.972 6.972 5 C -0.755 4.755 6 C 0.009 3.991 7 N -0.149 5.149 8 C -0.069 4.069 9 C -0.222 4.222 10 C 0.001 3.999 11 C -0.198 4.198 12 C 0.070 3.930 13 C -0.503 4.503 14 H 0.080 0.920 15 C -0.166 4.166 16 N -0.469 5.469 17 Si 0.783 3.217 18 H -0.180 1.180 19 H -0.205 1.205 20 H -0.174 1.174 21 C -0.247 4.247 22 C -0.122 4.122 23 C -0.050 4.050 24 F -0.137 7.137 25 C -0.124 4.124 26 N -0.130 5.130 27 H 0.170 0.830 28 H 0.162 0.838 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.124 0.876 33 H 0.149 0.851 34 H 0.212 0.788 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.153 0.847 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -17.495 7.220 -17.209 25.580 hybrid contribution 0.126 -1.500 1.295 1.985 sum -17.369 5.721 -15.913 24.242 Atomic orbital electron populations 1.30065 1.20871 1.14042 1.13716 1.06971 0.80301 0.73970 0.75807 1.93574 1.81207 1.36114 1.86549 1.93576 1.81198 1.67644 1.54800 1.30747 1.03143 1.16629 1.25029 1.21674 0.94245 1.02093 0.81094 1.48494 1.37561 1.22639 1.06183 1.22848 0.95821 0.90777 0.97480 1.18925 1.08801 1.01606 0.92897 1.17843 0.96775 0.89790 0.95449 1.21013 1.00732 0.98663 0.99375 1.17818 0.90478 0.92080 0.92652 1.19431 1.24067 1.01943 1.04877 0.92025 1.26809 0.95719 1.00009 0.94066 1.69732 1.25534 1.35678 1.15961 0.85567 0.80646 0.78214 0.77284 1.18013 1.20474 1.17389 1.20989 1.06249 0.96720 1.00745 1.20777 0.96805 0.98442 0.96145 1.17358 1.01888 0.93174 0.92578 1.91312 1.72608 1.94389 1.55370 1.24216 0.95761 0.92283 1.00109 1.77072 1.23770 1.23287 0.88892 0.82992 0.83801 0.82918 0.82722 0.82786 0.87643 0.85102 0.78835 0.86950 0.89455 0.87285 0.84677 0.78704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.00 10.62 113.37 1.20 0.21 16 2 S 2.45 24.01 5.36 -56.49 -0.30 23.71 16 3 O -0.98 -17.93 18.10 -127.37 -2.31 -20.23 16 4 O -0.98 -17.14 18.10 -127.37 -2.30 -19.45 16 5 C -0.63 -6.47 5.99 71.98 0.43 -6.04 16 6 C 0.13 2.15 6.51 86.38 0.56 2.71 16 7 N -0.37 -9.18 3.67 -347.23 -1.27 -10.46 16 8 C 0.08 2.19 10.78 83.80 0.90 3.10 16 9 C -0.21 -7.17 5.36 -20.33 -0.11 -7.28 16 10 C 0.00 0.14 5.75 -20.04 -0.12 0.03 16 11 C -0.18 -7.86 9.45 22.92 0.22 -7.65 16 12 C 0.07 3.51 5.10 -21.31 -0.11 3.40 16 13 C -0.47 -25.33 9.56 23.43 0.22 -25.10 16 14 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 15 C 0.05 2.54 5.40 85.24 0.46 3.00 16 16 N -0.84 -44.54 13.93 21.82 0.30 -44.23 16 17 Si 0.96 40.60 24.51 68.60 1.68 42.29 16 18 H -0.25 -10.11 6.70 99.48 0.67 -9.45 16 19 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.25 -10.79 6.86 99.48 0.68 -10.11 16 21 C -0.23 -10.22 7.16 22.75 0.16 -10.06 16 22 C -0.10 -4.13 9.99 22.23 0.22 -3.91 16 23 C -0.03 -1.19 7.26 22.81 0.17 -1.03 16 24 F -0.16 -5.80 16.34 44.97 0.73 -5.06 16 25 C 0.06 1.95 11.93 85.50 1.02 2.97 16 26 N -0.31 -8.95 12.38 -56.46 -0.70 -9.65 16 27 H 0.15 -0.27 8.14 -2.39 -0.02 -0.29 16 28 H 0.14 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.13 1.59 8.07 -2.38 -0.02 1.57 16 34 H 0.19 4.58 8.06 -2.91 -0.02 4.55 16 35 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 36 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 37 H 0.11 4.82 4.72 -2.91 -0.01 4.81 16 38 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 39 H 0.20 5.43 8.06 -2.91 -0.02 5.40 16 Total: -1.00 -74.85 354.15 2.09 -72.76 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 1.02 Total: 15.96 kcal Atomic # 6 Polarization: -50.88 SS G_CDS: 5.24 Total: -45.65 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -1.67 Total: -64.34 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -4.61 Total: -39.68 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.73 Total: -5.06 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 1.68 Total: 42.29 kcal Atomic # 16 Polarization: 24.01 SS G_CDS: -0.30 Total: 23.71 kcal Total: -74.85 2.09 -72.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245481782.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.093 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds