Wall clock time and date at job start Tue Mar 31 2020 20:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42102 * 108.58100 * 2 1 4 4 O 1.42102 * 108.58314 * 228.96986 * 2 1 3 5 5 C 1.81401 * 101.92005 * 114.48440 * 2 1 3 6 6 C 1.53009 * 109.47198 * 179.97438 * 5 2 1 7 7 N 1.46490 * 109.47090 * 179.97438 * 6 5 2 8 8 C 1.34719 * 125.81458 * 124.99892 * 7 6 5 9 9 C 1.37871 * 107.39242 * 179.97438 * 8 7 6 10 10 C 1.47924 * 126.37313 * 180.02562 * 9 8 7 11 11 C 1.39070 * 120.25887 * 309.72306 * 10 9 8 12 12 C 1.38103 * 120.17576 * 179.78794 * 11 10 9 13 13 C 1.38843 * 120.71316 * 0.46977 * 12 11 10 14 14 C 1.37707 * 120.52327 * 359.78718 * 13 12 11 15 15 F 1.35098 * 120.10000 * 179.97438 * 14 13 12 16 16 C 1.41027 * 119.79838 * 359.97438 * 14 13 12 17 17 C 1.40805 * 120.34436 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00666 * 143.36676 * 17 16 14 19 19 C 1.40012 * 120.00229 * 323.36464 * 17 16 14 20 20 N 1.30835 * 119.99646 * 340.00026 * 19 17 16 21 21 Si 1.86799 * 120.00005 * 159.99129 * 19 17 16 22 22 H 1.48499 * 109.47456 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46472 * 120.00475 * 21 19 17 24 24 H 1.48503 * 109.47176 * 240.00010 * 21 19 17 25 25 C 1.41115 * 107.26015 * 0.26683 * 9 8 7 26 26 N 1.30551 * 108.11774 * 359.55132 * 25 9 8 27 27 H 1.08995 * 109.47438 * 305.51215 * 1 2 3 28 28 H 1.09004 * 109.47073 * 65.51514 * 1 2 3 29 29 H 1.09006 * 109.47026 * 185.51331 * 1 2 3 30 30 H 1.09005 * 109.47026 * 60.00577 * 5 2 1 31 31 H 1.08999 * 109.47659 * 300.00079 * 5 2 1 32 32 H 1.09003 * 109.46537 * 59.99859 * 6 5 2 33 33 H 1.08999 * 109.46953 * 300.00601 * 6 5 2 34 34 H 1.08001 * 126.30127 * 359.96220 * 8 7 6 35 35 H 1.08001 * 119.91295 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.64473 * 180.21290 * 12 11 10 37 37 H 1.08000 * 119.73646 * 179.76752 * 13 12 11 38 38 H 0.96999 * 119.99819 * 180.02562 * 20 19 17 39 39 H 1.08002 * 125.94071 * 179.73883 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 7 4.0080 -1.4130 3.1027 8 6 4.7834 -2.4937 3.3164 9 6 4.8097 -2.7196 4.6763 10 6 5.5382 -3.8032 5.3716 11 6 5.4030 -5.1215 4.9498 12 6 6.0873 -6.1312 5.5975 13 6 6.9093 -5.8494 6.6804 14 6 7.0603 -4.5551 7.1257 15 9 7.8619 -4.2907 8.1805 16 6 6.3756 -3.5065 6.4773 17 6 6.5220 -2.1788 6.9227 18 1 6.5427 -1.3687 6.2086 19 6 6.6408 -1.9085 8.2913 20 7 6.2354 -2.7895 9.1696 21 14 7.3783 -0.2904 8.8633 22 1 7.7552 0.5269 7.6821 23 1 6.3799 0.4481 9.6776 24 1 8.5856 -0.5597 9.6851 25 6 4.0079 -1.7283 5.2810 26 7 3.5412 -0.9536 4.3395 27 1 -0.3634 0.5969 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0230 0.0987 30 1 1.7610 -1.7370 1.6665 31 1 1.7610 -0.1170 2.4043 32 1 4.1335 0.1816 1.7466 33 1 4.1328 -1.4383 1.0090 34 1 5.2909 -3.0760 2.5615 35 1 4.7641 -5.3558 4.1111 36 1 5.9786 -7.1515 5.2606 37 1 7.4341 -6.6517 7.1775 38 1 6.3174 -2.6021 10.1178 39 1 3.8163 -1.6263 6.3390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245483340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:23 Heat of formation + Delta-G solvation = -11.266016 kcal Electronic energy + Delta-G solvation = -26129.249375 eV Core-core repulsion = 22080.736440 eV Total energy + Delta-G solvation = -4048.512934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.95676 -40.52590 -37.35261 -37.22974 -36.41811 -34.55719 -33.64993 -31.00387 -30.37968 -29.90110 -29.43045 -27.46708 -25.21973 -24.20451 -21.73578 -21.10682 -19.98903 -19.41921 -19.19407 -17.52839 -17.30192 -16.63548 -16.42539 -16.27308 -15.46533 -15.27912 -14.96839 -14.45133 -14.23158 -14.17973 -13.74988 -13.70800 -13.63229 -13.54742 -12.98562 -12.76142 -12.56120 -12.45631 -12.35927 -12.20245 -11.93886 -11.68795 -11.49661 -11.41457 -11.30773 -11.21634 -11.04117 -10.64601 -10.60459 -10.25865 -10.08443 -9.46499 -9.07721 -8.91064 -8.16065 -7.27215 -7.05612 -6.81098 -4.40857 -0.46352 2.20738 2.29848 2.63291 2.74462 2.80127 3.10824 3.15132 3.16927 3.25579 3.61658 3.63318 3.96372 4.12953 4.27864 4.36410 4.53528 4.58248 4.81113 5.06386 5.21349 5.29212 5.38938 5.45092 5.63508 5.97619 6.06390 6.11324 6.27402 6.47603 6.58249 6.70912 7.02872 7.14969 7.23588 7.41523 7.49594 7.60696 7.80860 7.86019 8.14424 8.29074 8.41943 8.74157 8.85681 10.16415 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.002874 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.075657 B = 9739.425462 C =11004.046128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.428 3.572 3 O -0.935 6.935 4 O -0.938 6.938 5 C -0.629 4.629 6 C 0.158 3.842 7 N -0.382 5.382 8 C 0.026 3.974 9 C -0.126 4.126 10 C -0.108 4.108 11 C -0.090 4.090 12 C -0.214 4.214 13 C -0.137 4.137 14 C 0.040 3.960 15 F -0.144 7.144 16 C 0.103 3.897 17 C -0.456 4.456 18 H 0.085 0.915 19 C 0.081 3.919 20 N -0.775 5.775 21 Si 0.902 3.098 22 H -0.260 1.260 23 H -0.275 1.275 24 H -0.272 1.272 25 C 0.085 3.915 26 N -0.317 5.317 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.147 0.853 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.283 0.717 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 3.003 -13.001 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.609 3.391 3 O -0.932 6.932 4 O -0.935 6.935 5 C -0.757 4.757 6 C 0.034 3.966 7 N -0.166 5.166 8 C -0.117 4.117 9 C -0.136 4.136 10 C -0.111 4.111 11 C -0.108 4.108 12 C -0.234 4.234 13 C -0.156 4.156 14 C 0.020 3.980 15 F -0.123 7.123 16 C 0.099 3.901 17 C -0.484 4.484 18 H 0.103 0.897 19 C -0.140 4.140 20 N -0.398 5.398 21 Si 0.727 3.273 22 H -0.184 1.184 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.101 4.101 26 N -0.138 5.138 27 H 0.149 0.851 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.165 0.835 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.186 0.814 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.068 4.353 -13.754 17.592 hybrid contribution 0.308 -0.413 1.520 1.605 sum -9.759 3.940 -12.234 16.138 Atomic orbital electron populations 1.30230 1.26295 1.11793 1.11927 1.07646 0.78585 0.75756 0.77107 1.93625 1.79023 1.34277 1.86276 1.93617 1.79121 1.67070 1.53655 1.30766 1.05679 1.15182 1.24108 1.21032 0.91260 1.01180 0.83114 1.47915 1.40149 1.23502 1.05041 1.22832 0.98927 0.92018 0.97969 1.19045 1.04081 1.00151 0.90372 1.17761 1.01723 0.90174 1.01459 1.20584 0.99166 0.92310 0.98789 1.20047 1.05101 0.97435 1.00778 1.20622 1.01587 0.94503 0.98915 1.17754 0.97186 0.93374 0.89716 1.91329 1.70976 1.94870 1.55085 1.17464 0.89387 0.92833 0.90398 1.19279 1.44168 0.93063 0.91926 0.89692 1.25802 0.93056 0.98530 0.96605 1.69768 1.31704 1.35063 1.03273 0.86339 0.79643 0.81875 0.79484 1.18405 1.20008 1.19678 1.24124 0.94760 0.92282 0.98933 1.76978 1.24542 1.23789 0.88461 0.85113 0.85128 0.85206 0.84414 0.83521 0.88759 0.87632 0.81394 0.88802 0.88494 0.88296 0.90636 0.79724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.31 10.62 101.05 1.07 -1.23 16 2 S 2.43 16.46 5.36 -107.50 -0.58 15.88 16 3 O -0.93 -10.02 18.10 -57.83 -1.05 -11.06 16 4 O -0.94 -9.53 18.10 -57.83 -1.05 -10.58 16 5 C -0.63 -4.82 5.98 37.16 0.22 -4.60 16 6 C 0.16 1.72 6.50 -4.04 -0.03 1.69 16 7 N -0.38 -5.94 3.66 -60.74 -0.22 -6.16 16 8 C 0.03 0.43 11.39 -16.42 -0.19 0.25 16 9 C -0.13 -2.52 5.00 -104.97 -0.52 -3.05 16 10 C -0.11 -2.43 5.81 -104.25 -0.61 -3.04 16 11 C -0.09 -1.85 9.69 -39.32 -0.38 -2.23 16 12 C -0.21 -4.42 10.03 -39.41 -0.40 -4.82 16 13 C -0.14 -3.09 9.99 -39.55 -0.40 -3.49 16 14 C 0.04 1.02 6.68 -38.72 -0.26 0.76 16 15 F -0.14 -3.84 14.27 2.25 0.03 -3.81 16 16 C 0.10 2.59 5.42 -106.49 -0.58 2.02 16 17 C -0.46 -11.57 7.32 -37.95 -0.28 -11.85 16 18 H 0.09 2.16 7.31 -52.48 -0.38 1.77 16 19 C 0.08 2.00 4.50 -17.31 -0.08 1.92 16 20 N -0.77 -19.98 11.13 55.55 0.62 -19.36 16 21 Si 0.90 19.04 29.60 -169.99 -5.03 14.01 16 22 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 C 0.09 1.70 10.62 -17.01 -0.18 1.52 16 26 N -0.32 -5.75 12.34 30.84 0.38 -5.37 16 27 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 30 H 0.14 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.15 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 35 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 39 H 0.19 3.74 7.96 -52.49 -0.42 3.32 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -34.88 356.15 -8.70 -43.58 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.58 Total: 3.65 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.59 Total: -26.14 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.78 Total: -30.89 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -2.09 Total: -21.64 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.03 Total: -3.81 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 16 Polarization: 16.46 SS G_CDS: -0.58 Total: 15.88 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.88 -8.70 -43.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245483340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.313 kcal (2) G-P(sol) polarization free energy of solvation -34.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds