Wall clock time and date at job start Tue Mar 31 2020 20:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42102 * 108.58100 * 2 1 4 4 O 1.42102 * 108.58314 * 228.96986 * 2 1 3 5 5 C 1.81401 * 101.92005 * 114.48440 * 2 1 3 6 6 C 1.53009 * 109.47198 * 179.97438 * 5 2 1 7 7 N 1.46490 * 109.47090 * 179.97438 * 6 5 2 8 8 C 1.34719 * 125.81458 * 124.99892 * 7 6 5 9 9 C 1.37871 * 107.39242 * 179.97438 * 8 7 6 10 10 C 1.47924 * 126.37313 * 180.02562 * 9 8 7 11 11 C 1.39070 * 120.25887 * 309.72306 * 10 9 8 12 12 C 1.38103 * 120.17576 * 179.78794 * 11 10 9 13 13 C 1.38843 * 120.71316 * 0.46977 * 12 11 10 14 14 C 1.37707 * 120.52327 * 359.78718 * 13 12 11 15 15 F 1.35098 * 120.10000 * 179.97438 * 14 13 12 16 16 C 1.41027 * 119.79838 * 359.97438 * 14 13 12 17 17 C 1.40805 * 120.34436 * 180.02562 * 16 14 13 18 18 H 1.08006 * 120.00666 * 143.36676 * 17 16 14 19 19 C 1.40012 * 120.00229 * 323.36464 * 17 16 14 20 20 N 1.30835 * 119.99646 * 340.00026 * 19 17 16 21 21 Si 1.86799 * 120.00005 * 159.99129 * 19 17 16 22 22 H 1.48499 * 109.47456 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46472 * 120.00475 * 21 19 17 24 24 H 1.48503 * 109.47176 * 240.00010 * 21 19 17 25 25 C 1.41115 * 107.26015 * 0.26683 * 9 8 7 26 26 N 1.30551 * 108.11774 * 359.55132 * 25 9 8 27 27 H 1.08995 * 109.47438 * 305.51215 * 1 2 3 28 28 H 1.09004 * 109.47073 * 65.51514 * 1 2 3 29 29 H 1.09006 * 109.47026 * 185.51331 * 1 2 3 30 30 H 1.09005 * 109.47026 * 60.00577 * 5 2 1 31 31 H 1.08999 * 109.47659 * 300.00079 * 5 2 1 32 32 H 1.09003 * 109.46537 * 59.99859 * 6 5 2 33 33 H 1.08999 * 109.46953 * 300.00601 * 6 5 2 34 34 H 1.08001 * 126.30127 * 359.96220 * 8 7 6 35 35 H 1.08001 * 119.91295 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.64473 * 180.21290 * 12 11 10 37 37 H 1.08000 * 119.73646 * 179.76752 * 13 12 11 38 38 H 0.96999 * 119.99819 * 180.02562 * 20 19 17 39 39 H 1.08002 * 125.94071 * 179.73883 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 3.7055 -0.8195 1.7980 7 7 4.0080 -1.4130 3.1027 8 6 4.7834 -2.4937 3.3164 9 6 4.8097 -2.7196 4.6763 10 6 5.5382 -3.8032 5.3716 11 6 5.4030 -5.1215 4.9498 12 6 6.0873 -6.1312 5.5975 13 6 6.9093 -5.8494 6.6804 14 6 7.0603 -4.5551 7.1257 15 9 7.8619 -4.2907 8.1805 16 6 6.3756 -3.5065 6.4773 17 6 6.5220 -2.1788 6.9227 18 1 6.5427 -1.3687 6.2086 19 6 6.6408 -1.9085 8.2913 20 7 6.2354 -2.7895 9.1696 21 14 7.3783 -0.2904 8.8633 22 1 7.7552 0.5269 7.6821 23 1 6.3799 0.4481 9.6776 24 1 8.5856 -0.5597 9.6851 25 6 4.0079 -1.7283 5.2810 26 7 3.5412 -0.9536 4.3395 27 1 -0.3634 0.5969 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0230 0.0987 30 1 1.7610 -1.7370 1.6665 31 1 1.7610 -0.1170 2.4043 32 1 4.1335 0.1816 1.7466 33 1 4.1328 -1.4383 1.0090 34 1 5.2909 -3.0760 2.5615 35 1 4.7641 -5.3558 4.1111 36 1 5.9786 -7.1515 5.2606 37 1 7.4341 -6.6517 7.1775 38 1 6.3174 -2.6021 10.1178 39 1 3.8163 -1.6263 6.3390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245483340.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:22 Heat of formation + Delta-G solvation = -34.962774 kcal Electronic energy + Delta-G solvation = -26130.276943 eV Core-core repulsion = 22080.736440 eV Total energy + Delta-G solvation = -4049.540503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.89425 -41.90055 -38.92895 -38.02669 -37.09694 -35.60006 -35.42096 -32.58462 -31.55830 -31.09772 -30.30805 -28.95164 -27.00255 -25.21391 -23.29709 -22.82883 -21.31382 -20.90399 -19.81176 -19.26716 -18.38276 -17.54676 -17.30012 -17.11441 -16.96400 -16.69114 -16.32575 -15.94130 -15.90655 -15.63479 -15.28583 -14.81364 -14.59689 -14.25337 -14.03587 -13.91349 -13.76600 -13.64952 -13.44938 -13.17871 -13.15094 -13.05538 -13.04671 -12.92706 -12.64184 -12.33905 -12.30679 -12.09976 -11.92098 -11.63847 -11.63509 -11.16438 -10.88970 -10.25220 -9.72919 -9.06340 -8.72212 -8.57704 -6.28064 -0.99955 0.67926 0.98458 1.09911 1.35882 1.45098 1.48280 1.65024 1.81688 2.08288 2.21404 2.66817 2.78123 3.10725 3.38624 3.56301 3.63784 3.95194 4.12477 4.13664 4.15237 4.22579 4.28706 4.41271 4.46106 4.54214 4.74447 4.87484 4.92596 4.95911 5.00941 5.18612 5.24027 5.37817 5.66157 5.75771 5.88135 6.05414 6.11160 6.23530 6.37927 6.57384 6.86488 6.92292 7.03650 8.37001 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.016389 B = 0.002874 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.075657 B = 9739.425462 C =11004.046128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.449 3.551 3 O -0.980 6.980 4 O -0.973 6.973 5 C -0.627 4.627 6 C 0.133 3.867 7 N -0.369 5.369 8 C 0.052 3.948 9 C -0.168 4.168 10 C -0.101 4.101 11 C -0.093 4.093 12 C -0.199 4.199 13 C -0.147 4.147 14 C -0.001 4.001 15 F -0.161 7.161 16 C 0.070 3.930 17 C -0.478 4.478 18 H 0.072 0.928 19 C 0.045 3.955 20 N -0.814 5.814 21 Si 0.960 3.040 22 H -0.263 1.263 23 H -0.264 1.264 24 H -0.272 1.272 25 C 0.068 3.932 26 N -0.325 5.325 27 H 0.149 0.851 28 H 0.143 0.857 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.205 0.795 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.285 0.715 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 2.374 -15.738 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.633 3.367 3 O -0.977 6.977 4 O -0.970 6.970 5 C -0.754 4.754 6 C 0.012 3.988 7 N -0.151 5.151 8 C -0.094 4.094 9 C -0.179 4.179 10 C -0.104 4.104 11 C -0.111 4.111 12 C -0.218 4.218 13 C -0.166 4.166 14 C -0.022 4.022 15 F -0.140 7.140 16 C 0.067 3.933 17 C -0.507 4.507 18 H 0.090 0.910 19 C -0.172 4.172 20 N -0.439 5.439 21 Si 0.782 3.218 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.197 1.197 25 C -0.118 4.118 26 N -0.146 5.146 27 H 0.167 0.833 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.175 0.825 31 H 0.166 0.834 32 H 0.115 0.885 33 H 0.152 0.848 34 H 0.222 0.778 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.868 3.739 -16.502 20.668 hybrid contribution 0.715 -0.306 2.098 2.237 sum -11.153 3.434 -14.404 18.538 Atomic orbital electron populations 1.30067 1.21090 1.14023 1.13553 1.06874 0.80152 0.73915 0.75742 1.93570 1.81205 1.36343 1.86590 1.93569 1.81134 1.67576 1.54723 1.30745 1.03303 1.16601 1.24789 1.21599 0.94066 1.01796 0.81363 1.48308 1.38453 1.22639 1.05734 1.23259 0.97285 0.91627 0.97255 1.19058 1.05990 1.00942 0.91946 1.18125 1.00180 0.91978 1.00084 1.20998 0.99194 0.91314 0.99619 1.20552 1.02820 0.99387 0.99004 1.20932 1.02167 0.93826 0.99660 1.18215 0.98620 0.94931 0.90404 1.91264 1.71599 1.95125 1.56051 1.17833 0.90442 0.93016 0.92047 1.19242 1.46232 0.93094 0.92159 0.90954 1.26427 0.93010 1.01211 0.96526 1.69815 1.33704 1.36942 1.03462 0.85477 0.78952 0.78530 0.78814 1.18677 1.18902 1.19661 1.23880 0.96041 0.93196 0.98652 1.76916 1.24889 1.23564 0.89256 0.83264 0.83842 0.82830 0.82507 0.83363 0.88521 0.84779 0.77788 0.85155 0.84665 0.86670 0.90475 0.81684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.88 10.62 113.37 1.20 -0.68 16 2 S 2.45 27.49 5.36 -56.49 -0.30 27.19 16 3 O -0.98 -19.86 18.10 -127.37 -2.31 -22.16 16 4 O -0.97 -17.72 18.10 -127.37 -2.31 -20.02 16 5 C -0.63 -7.87 5.98 71.99 0.43 -7.44 16 6 C 0.13 2.56 6.50 86.38 0.56 3.13 16 7 N -0.37 -10.66 3.66 -346.08 -1.27 -11.93 16 8 C 0.05 1.60 11.39 84.16 0.96 2.56 16 9 C -0.17 -6.67 5.00 -20.09 -0.10 -6.77 16 10 C -0.10 -4.51 5.81 -19.62 -0.11 -4.62 16 11 C -0.09 -3.58 9.69 22.44 0.22 -3.36 16 12 C -0.20 -7.66 10.03 22.38 0.22 -7.44 16 13 C -0.15 -6.55 9.99 22.29 0.22 -6.33 16 14 C 0.00 -0.07 6.68 22.83 0.15 0.08 16 15 F -0.16 -9.03 14.27 44.97 0.64 -8.39 16 16 C 0.07 3.64 5.42 -21.08 -0.11 3.52 16 17 C -0.48 -25.49 7.32 23.33 0.17 -25.32 16 18 H 0.07 3.89 7.31 -2.91 -0.02 3.86 16 19 C 0.04 2.32 4.50 85.27 0.38 2.70 16 20 N -0.81 -44.15 11.13 21.84 0.24 -43.90 16 21 Si 0.96 40.80 29.60 68.60 2.03 42.83 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 C 0.07 2.74 10.62 85.59 0.91 3.65 16 26 N -0.32 -11.60 12.34 -56.34 -0.70 -12.29 16 27 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 28 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.15 -0.15 8.14 -2.39 -0.02 -0.16 16 30 H 0.16 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.13 1.81 8.07 -2.39 -0.02 1.80 16 34 H 0.21 4.68 8.06 -2.91 -0.02 4.65 16 35 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 36 H 0.14 4.18 8.06 -2.91 -0.02 4.15 16 37 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 38 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 39 H 0.17 7.18 7.96 -2.91 -0.02 7.15 16 Total: -1.00 -79.40 356.15 2.22 -77.17 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.08 Total: 17.84 kcal Atomic # 6 Polarization: -51.43 SS G_CDS: 5.11 Total: -46.32 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -1.72 Total: -68.13 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -4.61 Total: -42.19 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 0.64 Total: -8.39 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 27.49 SS G_CDS: -0.30 Total: 27.19 kcal Total: -79.40 2.22 -77.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245483340.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.209 kcal (2) G-P(sol) polarization free energy of solvation -79.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds