Wall clock time and date at job start Tue Mar 31 2020 20:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42109 * 108.57468 * 2 1 4 4 O 1.42094 * 108.57853 * 228.97411 * 2 1 3 5 5 C 1.81401 * 101.92019 * 114.48264 * 2 1 3 6 6 C 1.53007 * 109.46861 * 179.97438 * 5 2 1 7 7 N 1.46497 * 109.47069 * 179.97438 * 6 5 2 8 8 C 1.34827 * 125.89363 * 125.31177 * 7 6 5 9 9 C 1.36431 * 107.61191 * 180.18360 * 8 7 6 10 10 C 1.48490 * 126.21921 * 179.84327 * 9 8 7 11 11 C 1.39664 * 119.98567 * 359.71274 * 10 9 8 12 12 C 1.38627 * 120.35574 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.83999 * 179.97438 * 12 11 10 14 14 C 1.37940 * 120.32245 * 359.97438 * 12 11 10 15 15 C 1.40717 * 119.95482 * 0.02562 * 14 12 11 16 16 C 1.41429 * 120.17221 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99865 * 154.76870 * 16 15 14 18 18 C 1.39921 * 120.00158 * 334.76714 * 16 15 14 19 19 N 1.30835 * 119.99999 * 342.79850 * 18 16 15 20 20 Si 1.86799 * 120.00082 * 162.78661 * 18 16 15 21 21 H 1.48497 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46917 * 120.00387 * 20 18 16 23 23 H 1.48491 * 109.47771 * 240.00367 * 20 18 16 24 24 C 1.38699 * 119.97941 * 179.71490 * 10 9 8 25 25 C 1.40847 * 107.55519 * 359.57924 * 9 8 7 26 26 N 1.30673 * 108.09628 * 0.26101 * 25 9 8 27 27 H 1.09005 * 109.47234 * 305.51135 * 1 2 3 28 28 H 1.09002 * 109.47121 * 65.51641 * 1 2 3 29 29 H 1.09001 * 109.46848 * 185.51501 * 1 2 3 30 30 H 1.08995 * 109.47151 * 60.00474 * 5 2 1 31 31 H 1.08997 * 109.47357 * 300.00066 * 5 2 1 32 32 H 1.09006 * 109.47028 * 60.00737 * 6 5 2 33 33 H 1.08997 * 109.47242 * 300.00201 * 6 5 2 34 34 H 1.07994 * 126.19239 * 0.06457 * 8 7 6 35 35 H 1.07999 * 119.81862 * 0.28073 * 11 10 9 36 36 H 1.08000 * 120.02572 * 179.97438 * 14 12 11 37 37 H 0.97002 * 119.99572 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.15801 * 0.02562 * 24 10 9 39 39 H 1.07993 * 125.94661 * 180.24424 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.7055 -0.8194 1.7980 7 7 4.0081 -1.4129 3.1027 8 6 4.7887 -2.4907 3.3189 9 6 4.8112 -2.7211 4.6635 10 6 5.5444 -3.8118 5.3546 11 6 6.2970 -4.7257 4.6137 12 6 6.9841 -5.7472 5.2510 13 9 7.7086 -6.6257 4.5241 14 6 6.9317 -5.8710 6.6239 15 6 6.1775 -4.9576 7.3834 16 6 6.1201 -5.0806 8.7912 17 1 5.9132 -4.2136 9.4010 18 6 6.3314 -6.3255 9.3939 19 7 6.2471 -7.4199 8.6818 20 14 6.7342 -6.4251 11.2153 21 1 6.7706 -5.0563 11.7897 22 1 5.6935 -7.2254 11.9093 23 1 8.0583 -7.0730 11.3948 24 6 5.4814 -3.9225 6.7358 25 6 4.0173 -1.7327 5.2772 26 7 3.5412 -0.9554 4.3409 27 1 -0.3634 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0988 30 1 1.7611 -1.7368 1.6666 31 1 1.7610 -0.1169 2.4043 32 1 4.1336 0.1817 1.7466 33 1 4.1328 -1.4383 1.0090 34 1 5.3016 -3.0684 2.5643 35 1 6.3473 -4.6335 3.5388 36 1 7.4685 -6.6689 7.1154 37 1 6.3939 -8.2829 9.0997 38 1 4.8996 -3.2172 7.3107 39 1 3.8340 -1.6345 6.3369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245484758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:44 Heat of formation + Delta-G solvation = -21.546329 kcal Electronic energy + Delta-G solvation = -25287.985988 eV Core-core repulsion = 21239.027266 eV Total energy + Delta-G solvation = -4048.958722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -47.65867 -40.99279 -37.46307 -37.36163 -36.53016 -34.90611 -33.77951 -30.98454 -30.65614 -30.00706 -29.53033 -27.52323 -25.51311 -24.40742 -22.09924 -21.38345 -19.91933 -19.79216 -19.34084 -17.85942 -17.25095 -16.77885 -16.50088 -16.29345 -15.69530 -15.29496 -14.94411 -14.73530 -14.58987 -14.41967 -14.30481 -13.95278 -13.73752 -13.70849 -13.17423 -12.98724 -12.79880 -12.63773 -12.55915 -12.46322 -12.04374 -11.92834 -11.67941 -11.60080 -11.24322 -11.13645 -11.08473 -10.79540 -10.58681 -10.44938 -9.99161 -9.69513 -9.35654 -9.30956 -8.65558 -7.50699 -6.97759 -6.82550 -4.52167 -0.58083 1.85088 2.17905 2.43471 2.48188 2.63956 3.02282 3.05065 3.08682 3.11343 3.50782 3.59577 3.85751 3.94224 4.12986 4.28272 4.41533 4.53285 4.63345 4.84272 5.00519 5.13583 5.17707 5.28857 5.51345 5.51794 5.80091 6.04592 6.11354 6.27571 6.54209 6.78557 6.88330 6.94980 7.12048 7.14165 7.48573 7.63215 7.70629 7.85724 7.87695 8.15543 8.47419 8.74294 8.76578 10.07099 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002134 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.447108 B =13116.763189 C =13883.622740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.428 3.572 3 O -0.934 6.934 4 O -0.935 6.935 5 C -0.632 4.632 6 C 0.155 3.845 7 N -0.378 5.378 8 C 0.052 3.948 9 C -0.162 4.162 10 C 0.034 3.966 11 C -0.270 4.270 12 C 0.108 3.892 13 F -0.168 7.168 14 C -0.201 4.201 15 C 0.130 3.870 16 C -0.456 4.456 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.787 5.787 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.216 4.216 25 C 0.067 3.933 26 N -0.305 5.305 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.175 0.825 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.283 0.717 38 H 0.101 0.899 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 10.739 -12.023 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.608 3.392 3 O -0.931 6.931 4 O -0.932 6.932 5 C -0.760 4.760 6 C 0.031 3.969 7 N -0.162 5.162 8 C -0.092 4.092 9 C -0.173 4.173 10 C 0.032 3.968 11 C -0.291 4.291 12 C 0.089 3.911 13 F -0.147 7.147 14 C -0.221 4.221 15 C 0.127 3.873 16 C -0.485 4.485 17 H 0.102 0.898 18 C -0.144 4.144 19 N -0.412 5.412 20 Si 0.734 3.266 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.236 4.236 25 C -0.120 4.120 26 N -0.125 5.125 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.192 0.808 35 H 0.116 0.884 36 H 0.146 0.854 37 H 0.094 0.906 38 H 0.119 0.881 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.070 11.825 -13.085 20.309 hybrid contribution 0.091 -1.482 1.482 2.097 sum -9.980 10.344 -11.603 18.472 Atomic orbital electron populations 1.30223 1.26002 1.11909 1.12044 1.07667 0.78732 0.75756 0.77001 1.93629 1.79113 1.34185 1.86202 1.93627 1.79157 1.67041 1.53423 1.30782 1.05277 1.15425 1.24518 1.21137 0.91675 1.01361 0.82691 1.48134 1.39135 1.23585 1.05304 1.22572 0.97307 0.91180 0.98191 1.19178 1.05982 1.00623 0.91501 1.17354 0.95153 0.91762 0.92519 1.20129 1.10190 1.00988 0.97780 1.17547 0.94559 0.89197 0.89833 1.91333 1.76535 1.68410 1.78387 1.21319 1.05430 1.05047 0.90299 1.17281 0.87402 0.89305 0.93272 1.19613 1.42343 0.94959 0.91572 0.89826 1.25967 0.92248 0.95231 1.00976 1.69827 1.33813 0.99076 1.38448 0.86227 0.78925 0.79649 0.81777 1.18235 1.19911 1.19615 1.20981 1.06584 1.04044 0.91983 1.24049 0.95847 0.92751 0.99305 1.77098 1.23511 1.23493 0.88377 0.85065 0.84988 0.85114 0.84241 0.83469 0.88392 0.87245 0.80759 0.88402 0.85411 0.90625 0.88112 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.79 10.62 101.05 1.07 -0.71 16 2 S 2.43 14.22 5.36 -107.50 -0.58 13.65 16 3 O -0.93 -8.99 18.10 -57.83 -1.05 -10.04 16 4 O -0.94 -8.84 18.10 -57.83 -1.05 -9.89 16 5 C -0.63 -4.04 5.99 37.16 0.22 -3.82 16 6 C 0.15 1.43 6.51 -4.04 -0.03 1.40 16 7 N -0.38 -5.10 3.67 -61.10 -0.22 -5.32 16 8 C 0.05 0.77 10.83 -16.89 -0.18 0.59 16 9 C -0.16 -2.88 6.04 -105.34 -0.64 -3.51 16 10 C 0.03 0.71 5.87 -104.97 -0.62 0.09 16 11 C -0.27 -5.89 9.55 -38.91 -0.37 -6.26 16 12 C 0.11 2.59 7.28 -39.55 -0.29 2.30 16 13 F -0.17 -3.90 17.26 2.25 0.04 -3.87 16 14 C -0.20 -5.16 8.66 -38.75 -0.34 -5.49 16 15 C 0.13 3.30 5.56 -106.87 -0.59 2.71 16 16 C -0.46 -11.42 9.05 -37.74 -0.34 -11.76 16 17 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 18 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 19 N -0.79 -19.77 10.96 55.55 0.61 -19.16 16 20 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 21 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.22 -4.92 9.32 -38.54 -0.36 -5.28 16 25 C 0.07 1.09 11.41 -17.06 -0.19 0.90 16 26 N -0.30 -4.66 12.38 30.80 0.38 -4.28 16 27 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 28 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.18 2.17 7.27 -52.49 -0.38 1.78 16 35 H 0.10 1.87 6.99 -52.49 -0.37 1.51 16 36 H 0.13 3.43 6.18 -52.49 -0.32 3.11 16 37 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 38 H 0.10 2.09 7.03 -52.48 -0.37 1.72 16 39 H 0.19 2.67 7.34 -52.49 -0.39 2.29 16 LS Contribution 356.47 15.07 5.37 5.37 Total: -1.00 -34.67 356.47 -8.59 -43.26 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.33 Total: 4.57 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -2.74 Total: -27.14 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.77 Total: -28.76 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -2.09 Total: -19.93 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 14.22 SS G_CDS: -0.58 Total: 13.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.67 -8.59 -43.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245484758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.715 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds