Wall clock time and date at job start Tue Mar 31 2020 20:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42109 * 108.57468 * 2 1 4 4 O 1.42094 * 108.57853 * 228.97411 * 2 1 3 5 5 C 1.81401 * 101.92019 * 114.48264 * 2 1 3 6 6 C 1.53007 * 109.46861 * 179.97438 * 5 2 1 7 7 N 1.46497 * 109.47069 * 179.97438 * 6 5 2 8 8 C 1.34827 * 125.89363 * 125.31177 * 7 6 5 9 9 C 1.36431 * 107.61191 * 180.18360 * 8 7 6 10 10 C 1.48490 * 126.21921 * 179.84327 * 9 8 7 11 11 C 1.39664 * 119.98567 * 359.71274 * 10 9 8 12 12 C 1.38627 * 120.35574 * 180.02562 * 11 10 9 13 13 F 1.35095 * 119.83999 * 179.97438 * 12 11 10 14 14 C 1.37940 * 120.32245 * 359.97438 * 12 11 10 15 15 C 1.40717 * 119.95482 * 0.02562 * 14 12 11 16 16 C 1.41429 * 120.17221 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99865 * 154.76870 * 16 15 14 18 18 C 1.39921 * 120.00158 * 334.76714 * 16 15 14 19 19 N 1.30835 * 119.99999 * 342.79850 * 18 16 15 20 20 Si 1.86799 * 120.00082 * 162.78661 * 18 16 15 21 21 H 1.48497 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46917 * 120.00387 * 20 18 16 23 23 H 1.48491 * 109.47771 * 240.00367 * 20 18 16 24 24 C 1.38699 * 119.97941 * 179.71490 * 10 9 8 25 25 C 1.40847 * 107.55519 * 359.57924 * 9 8 7 26 26 N 1.30673 * 108.09628 * 0.26101 * 25 9 8 27 27 H 1.09005 * 109.47234 * 305.51135 * 1 2 3 28 28 H 1.09002 * 109.47121 * 65.51641 * 1 2 3 29 29 H 1.09001 * 109.46848 * 185.51501 * 1 2 3 30 30 H 1.08995 * 109.47151 * 60.00474 * 5 2 1 31 31 H 1.08997 * 109.47357 * 300.00066 * 5 2 1 32 32 H 1.09006 * 109.47028 * 60.00737 * 6 5 2 33 33 H 1.08997 * 109.47242 * 300.00201 * 6 5 2 34 34 H 1.07994 * 126.19239 * 0.06457 * 8 7 6 35 35 H 1.07999 * 119.81862 * 0.28073 * 11 10 9 36 36 H 1.08000 * 120.02572 * 179.97438 * 14 12 11 37 37 H 0.97002 * 119.99572 * 179.97438 * 19 18 16 38 38 H 1.08005 * 120.15801 * 0.02562 * 24 10 9 39 39 H 1.07993 * 125.94661 * 180.24424 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3471 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7355 1.6153 6 6 3.7055 -0.8194 1.7980 7 7 4.0081 -1.4129 3.1027 8 6 4.7887 -2.4907 3.3189 9 6 4.8112 -2.7211 4.6635 10 6 5.5444 -3.8118 5.3546 11 6 6.2970 -4.7257 4.6137 12 6 6.9841 -5.7472 5.2510 13 9 7.7086 -6.6257 4.5241 14 6 6.9317 -5.8710 6.6239 15 6 6.1775 -4.9576 7.3834 16 6 6.1201 -5.0806 8.7912 17 1 5.9132 -4.2136 9.4010 18 6 6.3314 -6.3255 9.3939 19 7 6.2471 -7.4199 8.6818 20 14 6.7342 -6.4251 11.2153 21 1 6.7706 -5.0563 11.7897 22 1 5.6935 -7.2254 11.9093 23 1 8.0583 -7.0730 11.3948 24 6 5.4814 -3.9225 6.7358 25 6 4.0173 -1.7327 5.2772 26 7 3.5412 -0.9554 4.3409 27 1 -0.3634 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0988 30 1 1.7611 -1.7368 1.6666 31 1 1.7610 -0.1169 2.4043 32 1 4.1336 0.1817 1.7466 33 1 4.1328 -1.4383 1.0090 34 1 5.3016 -3.0684 2.5643 35 1 6.3473 -4.6335 3.5388 36 1 7.4685 -6.6689 7.1154 37 1 6.3939 -8.2829 9.0997 38 1 4.8996 -3.2172 7.3107 39 1 3.8340 -1.6345 6.3369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245484758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:44 Heat of formation + Delta-G solvation = -44.718952 kcal Electronic energy + Delta-G solvation = -25288.990828 eV Core-core repulsion = 21239.027266 eV Total energy + Delta-G solvation = -4049.963562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.53155 -42.18138 -39.10633 -38.05965 -37.13120 -35.98536 -35.33942 -32.54661 -31.62993 -31.25840 -30.35754 -28.91807 -27.33115 -25.29662 -23.63287 -22.94070 -21.34467 -21.14518 -19.85029 -19.33173 -18.29297 -17.68051 -17.37490 -17.03963 -16.96780 -16.66044 -16.44797 -16.31860 -16.21713 -16.05881 -15.36154 -14.98262 -14.74116 -14.31194 -14.13669 -14.02509 -13.93185 -13.68452 -13.61978 -13.38182 -13.18473 -13.08709 -12.90033 -12.76947 -12.69257 -12.44839 -12.14692 -12.12281 -11.99597 -11.69201 -11.61120 -11.40541 -11.10198 -10.44137 -10.20927 -9.34044 -8.69419 -8.49686 -6.41583 -1.03704 0.48180 0.84509 1.03031 1.40806 1.46772 1.48707 1.56647 1.77741 2.06264 2.21506 2.62494 2.77619 3.07268 3.30313 3.55558 3.67735 3.74171 3.83573 3.96967 4.09202 4.11552 4.20017 4.36905 4.40513 4.58602 4.63056 4.75554 4.82528 4.84015 4.99461 5.01779 5.16157 5.33649 5.53659 5.73693 5.80494 5.94729 5.99446 6.01974 6.31978 6.61601 6.66695 6.88987 6.92088 8.30374 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.002134 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.447108 B =13116.763189 C =13883.622740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.446 3.554 3 O -0.977 6.977 4 O -0.975 6.975 5 C -0.628 4.628 6 C 0.130 3.870 7 N -0.367 5.367 8 C 0.073 3.927 9 C -0.203 4.203 10 C 0.048 3.952 11 C -0.269 4.269 12 C 0.096 3.904 13 F -0.167 7.167 14 C -0.233 4.233 15 C 0.106 3.894 16 C -0.487 4.487 17 H 0.088 0.912 18 C 0.033 3.967 19 N -0.823 5.823 20 Si 0.984 3.016 21 H -0.253 1.253 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.229 4.229 25 C 0.062 3.938 26 N -0.311 5.311 27 H 0.151 0.849 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.203 0.797 35 H 0.129 0.871 36 H 0.105 0.895 37 H 0.289 0.711 38 H 0.114 0.886 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.713 12.009 -13.025 21.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.630 3.370 3 O -0.974 6.974 4 O -0.972 6.972 5 C -0.756 4.756 6 C 0.009 3.991 7 N -0.149 5.149 8 C -0.074 4.074 9 C -0.215 4.215 10 C 0.047 3.953 11 C -0.289 4.289 12 C 0.077 3.923 13 F -0.146 7.146 14 C -0.254 4.254 15 C 0.103 3.897 16 C -0.516 4.516 17 H 0.106 0.894 18 C -0.182 4.182 19 N -0.449 5.449 20 Si 0.805 3.195 21 H -0.176 1.176 22 H -0.190 1.190 23 H -0.193 1.193 24 C -0.249 4.249 25 C -0.125 4.125 26 N -0.132 5.132 27 H 0.170 0.830 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.173 0.827 31 H 0.172 0.828 32 H 0.123 0.877 33 H 0.151 0.849 34 H 0.219 0.781 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.844 13.128 -14.115 22.624 hybrid contribution 0.521 -1.759 1.567 2.413 sum -11.323 11.368 -12.549 20.370 Atomic orbital electron populations 1.30075 1.21043 1.14008 1.13675 1.06953 0.80223 0.73980 0.75845 1.93574 1.81174 1.36119 1.86577 1.93575 1.81160 1.67642 1.54832 1.30748 1.03297 1.16633 1.24917 1.21682 0.94113 1.02159 0.81139 1.48493 1.37609 1.22670 1.06134 1.22946 0.95898 0.90846 0.97708 1.19036 1.08319 1.01227 0.92877 1.17592 0.93833 0.91892 0.92031 1.20456 1.09170 0.99961 0.99358 1.17758 0.95066 0.89943 0.89535 1.91320 1.76589 1.68550 1.78156 1.21214 1.07202 1.05667 0.91294 1.17620 0.87942 0.90187 0.93940 1.19896 1.43968 0.95781 0.91944 0.89414 1.26848 0.91386 0.94442 1.05566 1.69897 1.34672 0.99780 1.40537 0.85124 0.78689 0.79820 0.75909 1.17598 1.19048 1.19303 1.21191 1.06722 1.03826 0.93159 1.24203 0.95678 0.92492 1.00097 1.77082 1.23719 1.23429 0.88935 0.83021 0.83856 0.82966 0.82693 0.82831 0.87655 0.84917 0.78060 0.85361 0.87674 0.90039 0.86768 0.78823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -1.03 10.62 113.37 1.20 0.18 16 2 S 2.45 23.33 5.36 -56.49 -0.30 23.02 16 3 O -0.98 -17.60 18.10 -127.37 -2.31 -19.90 16 4 O -0.97 -16.84 18.10 -127.37 -2.30 -19.14 16 5 C -0.63 -6.18 5.99 71.98 0.43 -5.75 16 6 C 0.13 2.04 6.51 86.38 0.56 2.60 16 7 N -0.37 -8.84 3.67 -347.22 -1.27 -10.12 16 8 C 0.07 1.96 10.83 83.81 0.91 2.86 16 9 C -0.20 -6.89 6.04 -20.33 -0.12 -7.01 16 10 C 0.05 2.01 5.87 -20.09 -0.12 1.89 16 11 C -0.27 -11.53 9.55 22.71 0.22 -11.32 16 12 C 0.10 4.71 7.28 22.29 0.16 4.87 16 13 F -0.17 -7.90 17.26 44.97 0.78 -7.12 16 14 C -0.23 -12.55 8.66 22.81 0.20 -12.35 16 15 C 0.11 5.57 5.56 -21.32 -0.12 5.45 16 16 C -0.49 -25.24 9.05 23.46 0.21 -25.02 16 17 H 0.09 4.29 7.90 -2.91 -0.02 4.26 16 18 C 0.03 1.63 5.14 85.25 0.44 2.07 16 19 N -0.82 -42.96 10.96 21.82 0.24 -42.72 16 20 Si 0.98 37.20 29.59 68.60 2.03 39.23 16 21 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 22 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.27 -9.91 7.11 99.48 0.71 -9.21 16 24 C -0.23 -10.60 9.32 22.94 0.21 -10.39 16 25 C 0.06 1.91 11.41 85.50 0.98 2.89 16 26 N -0.31 -8.85 12.38 -56.46 -0.70 -9.55 16 27 H 0.15 -0.26 8.14 -2.39 -0.02 -0.27 16 28 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.15 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.13 1.45 8.07 -2.39 -0.02 1.43 16 34 H 0.20 4.19 7.27 -2.91 -0.02 4.17 16 35 H 0.13 4.60 6.99 -2.91 -0.02 4.58 16 36 H 0.11 6.02 6.18 -2.91 -0.02 6.00 16 37 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 38 H 0.11 4.81 7.03 -2.91 -0.02 4.79 16 39 H 0.20 5.43 7.34 -2.91 -0.02 5.41 16 Total: -1.00 -77.51 356.47 2.41 -75.09 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 1.09 Total: 20.24 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 5.16 Total: -49.04 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.73 Total: -62.38 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -4.61 Total: -39.05 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 0.78 Total: -7.12 kcal Atomic # 14 Polarization: 37.20 SS G_CDS: 2.03 Total: 39.23 kcal Atomic # 16 Polarization: 23.33 SS G_CDS: -0.30 Total: 23.02 kcal Total: -77.51 2.41 -75.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245484758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.374 kcal (2) G-P(sol) polarization free energy of solvation -77.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds