Wall clock time and date at job start Tue Mar 31 2020 20:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99948 * 2 1 4 4 H 1.48499 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46882 * 300.00262 * 3 2 1 6 6 H 1.48500 * 109.46912 * 60.00393 * 3 2 1 7 7 C 1.38797 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00496 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99647 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99713 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46553 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00303 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99603 * 179.97438 * 11 10 9 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 15 14 18 18 C 1.38255 * 119.94402 * 269.72571 * 17 16 15 19 19 C 1.38194 * 120.11197 * 179.77528 * 18 17 16 20 20 C 1.38709 * 120.06552 * 0.56813 * 19 18 17 21 21 C 1.38973 * 119.82066 * 359.62074 * 20 19 18 22 22 C 1.38197 * 119.94186 * 90.00414 * 17 16 15 23 23 O 1.36110 * 120.78264 * 180.26448 * 21 20 19 24 24 C 1.43170 * 116.71606 * 342.81707 * 23 21 20 25 25 C 1.53473 * 108.25175 * 46.16159 * 24 23 21 26 26 O 1.36101 * 119.39494 * 179.53439 * 20 19 18 27 27 H 0.97003 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46935 * 60.00459 * 10 9 7 29 29 H 1.08994 * 109.47239 * 299.99717 * 10 9 7 30 30 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 31 31 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 32 32 H 1.08992 * 109.47056 * 300.00206 * 15 14 13 33 33 H 1.09004 * 109.47006 * 60.00090 * 15 14 13 34 34 H 1.09001 * 109.47372 * 300.00036 * 16 15 14 35 35 H 1.08996 * 109.47261 * 60.00575 * 16 15 14 36 36 H 1.07996 * 119.94468 * 0.03411 * 18 17 16 37 37 H 1.07994 * 119.96967 * 180.29318 * 19 18 17 38 38 H 1.07996 * 119.96916 * 359.97438 * 22 17 16 39 39 H 1.08997 * 109.70794 * 165.85037 * 24 23 21 40 40 H 1.08995 * 109.70717 * 286.47091 * 24 23 21 41 41 H 1.08999 * 109.70887 * 59.94249 * 25 24 23 42 42 H 1.08996 * 109.71178 * 180.57532 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7956 -5.5015 0.0000 13 8 2.8407 -6.3388 -0.0003 14 6 2.2611 -7.6701 -0.0002 15 6 3.3801 -8.7136 -0.0014 16 6 2.7693 -10.1163 -0.0007 17 6 3.8715 -11.1441 -0.0012 18 6 4.3715 -11.6192 -1.1994 19 6 5.3854 -12.5582 -1.2039 20 6 5.8961 -13.0354 -0.0057 21 6 5.3908 -12.5607 1.1987 22 6 4.3767 -11.6143 1.1961 23 8 5.8811 -13.0113 2.3858 24 6 6.6350 -14.2279 2.3505 25 6 7.6304 -14.1430 1.1854 26 8 6.8879 -13.9671 -0.0261 27 1 -0.4850 0.8401 -0.0004 28 1 3.1245 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 1.6453 -7.7983 0.8900 31 1 1.6446 -7.7981 -0.8900 32 1 3.9955 -8.5853 -0.8917 33 1 3.9970 -8.5858 0.8882 34 1 2.1541 -10.2443 0.8900 35 1 2.1523 -10.2444 -0.8900 36 1 3.9720 -11.2528 -2.1334 37 1 5.7775 -12.9243 -2.1412 38 1 3.9816 -11.2446 2.1307 39 1 7.1765 -14.3521 3.2883 40 1 5.9629 -15.0725 2.1989 41 1 8.2983 -13.2945 1.3337 42 1 8.2113 -15.0636 1.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263617828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:57 Heat of formation + Delta-G solvation = -147.127318 kcal Electronic energy + Delta-G solvation = -24771.455615 eV Core-core repulsion = 20808.218847 eV Total energy + Delta-G solvation = -3963.236769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64386 -39.98768 -38.64673 -37.65571 -36.35706 -34.44121 -32.48003 -31.50618 -31.01545 -29.79243 -28.90005 -26.31055 -25.53755 -24.69804 -23.11181 -21.95674 -21.00719 -20.63422 -18.98156 -17.90395 -17.68089 -17.60474 -17.06954 -16.52113 -15.92754 -15.72791 -15.46767 -15.07175 -14.84273 -14.82403 -14.71237 -14.27787 -14.20605 -14.09685 -13.56692 -13.32679 -13.02335 -12.77439 -12.67088 -12.29183 -11.98556 -11.95599 -11.55624 -11.43746 -11.23386 -11.15001 -11.08914 -11.06542 -10.87960 -10.79508 -10.33880 -9.98139 -9.88094 -9.11795 -8.97727 -8.38004 -8.34319 -6.59417 -6.26833 -3.99274 0.89024 0.94399 2.57215 2.66036 2.69348 2.78824 3.20210 3.23725 3.28960 3.32858 3.55684 3.73678 4.15314 4.21159 4.29300 4.36776 4.43262 4.59316 4.75090 4.87336 4.90843 4.94230 4.95949 5.02712 5.09146 5.11582 5.22660 5.23076 5.39189 5.47084 5.54074 5.64722 5.74565 5.78969 5.80130 5.85804 6.00184 6.10204 6.20942 6.29341 6.47327 6.73919 7.00238 7.56436 8.20485 8.31333 9.18878 10.80746 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028049 B = 0.001499 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.020616 B =18671.042760 C =19003.142217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.060 6.060 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.362 6.362 14 C 0.065 3.935 15 C -0.114 4.114 16 C -0.075 4.075 17 C -0.073 4.073 18 C -0.110 4.110 19 C -0.111 4.111 20 C 0.043 3.957 21 C 0.052 3.948 22 C -0.109 4.109 23 O -0.307 6.307 24 C 0.021 3.979 25 C 0.020 3.980 26 O -0.309 6.309 27 H 0.269 0.731 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.122 0.878 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.195 -30.920 1.536 34.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.095 0.905 9 S 0.166 5.834 10 C -0.277 4.277 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.280 6.280 14 C -0.009 4.009 15 C -0.151 4.151 16 C -0.113 4.113 17 C -0.073 4.073 18 C -0.128 4.128 19 C -0.129 4.129 20 C -0.002 4.002 21 C 0.007 3.993 22 C -0.127 4.127 23 O -0.222 6.222 24 C -0.055 4.055 25 C -0.055 4.055 26 O -0.224 6.224 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.588 -31.150 1.573 33.634 hybrid contribution 2.016 0.977 0.164 2.246 sum 14.604 -30.173 1.737 33.567 Atomic orbital electron populations 1.70019 1.05990 1.27514 1.46724 1.25002 0.95058 0.99111 0.94348 0.86071 0.79624 0.81612 0.77933 1.19504 1.20510 1.20509 1.22892 0.95075 0.91164 1.59221 0.90523 1.85411 1.04459 0.96607 1.96877 1.23296 1.06911 0.91011 1.06458 1.23286 0.85184 0.87130 0.72364 1.90663 1.16960 1.85698 1.44158 1.86497 1.41313 1.15400 1.84796 1.22986 0.96045 0.79171 1.02719 1.21539 0.97802 0.91552 1.04232 1.20470 0.95359 0.91489 1.03934 1.19551 0.97966 0.97720 0.92093 1.20867 0.96717 0.97055 0.98146 1.20434 0.98509 0.98100 0.95882 1.18906 0.92607 0.95051 0.93586 1.18865 0.97070 0.99413 0.83981 1.20340 0.95347 0.97984 0.99066 1.86325 1.67977 1.40226 1.27677 1.23629 0.94509 0.86317 1.01051 1.23632 0.93602 1.04510 0.83801 1.86306 1.45294 1.54994 1.35772 0.92129 0.87943 0.87928 0.91233 0.91213 0.90469 0.90544 0.90243 0.90068 0.84791 0.84751 0.84645 0.86024 0.90490 0.90412 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.21 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.61 20.58 -107.50 -2.21 -3.82 16 10 C -0.13 -2.65 6.27 36.01 0.23 -2.43 16 11 C 0.48 9.29 7.98 36.01 0.29 9.57 16 12 O -0.49 -10.81 15.61 -18.75 -0.29 -11.10 16 13 O -0.36 -5.78 10.22 -39.25 -0.40 -6.18 16 14 C 0.07 0.81 5.47 37.16 0.20 1.01 16 15 C -0.11 -1.06 5.58 -26.73 -0.15 -1.21 16 16 C -0.08 -0.57 5.34 -27.88 -0.15 -0.72 16 17 C -0.07 -0.62 5.13 -104.63 -0.54 -1.15 16 18 C -0.11 -0.87 9.69 -39.59 -0.38 -1.26 16 19 C -0.11 -0.95 9.96 -39.42 -0.39 -1.34 16 20 C 0.04 0.42 6.49 -39.13 -0.25 0.16 16 21 C 0.05 0.51 6.49 -39.14 -0.25 0.26 16 22 C -0.11 -1.01 9.61 -39.42 -0.38 -1.38 16 23 O -0.31 -2.83 10.42 -32.88 -0.34 -3.17 16 24 C 0.02 0.11 7.26 37.40 0.27 0.38 16 25 C 0.02 0.11 7.26 37.40 0.27 0.38 16 26 O -0.31 -2.73 10.42 -32.85 -0.34 -3.07 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.10 1.96 8.14 -51.92 -0.42 1.53 16 29 H 0.10 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.12 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 376.72 15.07 5.68 5.68 Total: -1.00 -34.75 376.72 -9.12 -43.87 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -5.88 Total: -2.78 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.04 Total: -10.53 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 0.73 Total: -25.08 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -1.38 Total: -23.52 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.75 -9.12 -43.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263617828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.256 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds