Wall clock time and date at job start Tue Mar 31 2020 20:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86809 * 119.99948 * 2 1 4 4 H 1.48499 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46882 * 300.00262 * 3 2 1 6 6 H 1.48500 * 109.46912 * 60.00393 * 3 2 1 7 7 C 1.38797 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00496 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99647 * 359.97438 * 7 2 1 10 10 C 1.81007 * 99.99713 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46553 * 179.97438 * 10 9 7 12 12 O 1.20826 * 120.00303 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99603 * 179.97438 * 11 10 9 14 14 C 1.45206 * 117.00001 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47091 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46946 * 180.02562 * 16 15 14 18 18 C 1.38255 * 119.94402 * 269.72571 * 17 16 15 19 19 C 1.38194 * 120.11197 * 179.77528 * 18 17 16 20 20 C 1.38709 * 120.06552 * 0.56813 * 19 18 17 21 21 C 1.38973 * 119.82066 * 359.62074 * 20 19 18 22 22 C 1.38197 * 119.94186 * 90.00414 * 17 16 15 23 23 O 1.36110 * 120.78264 * 180.26448 * 21 20 19 24 24 C 1.43170 * 116.71606 * 342.81707 * 23 21 20 25 25 C 1.53473 * 108.25175 * 46.16159 * 24 23 21 26 26 O 1.36101 * 119.39494 * 179.53439 * 20 19 18 27 27 H 0.97003 * 120.00139 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46935 * 60.00459 * 10 9 7 29 29 H 1.08994 * 109.47239 * 299.99717 * 10 9 7 30 30 H 1.09001 * 109.47157 * 299.99890 * 14 13 11 31 31 H 1.09004 * 109.47122 * 60.00023 * 14 13 11 32 32 H 1.08992 * 109.47056 * 300.00206 * 15 14 13 33 33 H 1.09004 * 109.47006 * 60.00090 * 15 14 13 34 34 H 1.09001 * 109.47372 * 300.00036 * 16 15 14 35 35 H 1.08996 * 109.47261 * 60.00575 * 16 15 14 36 36 H 1.07996 * 119.94468 * 0.03411 * 18 17 16 37 37 H 1.07994 * 119.96967 * 180.29318 * 19 18 17 38 38 H 1.07996 * 119.96916 * 359.97438 * 22 17 16 39 39 H 1.08997 * 109.70794 * 165.85037 * 24 23 21 40 40 H 1.08995 * 109.70717 * 286.47091 * 24 23 21 41 41 H 1.08999 * 109.70887 * 59.94249 * 25 24 23 42 42 H 1.08996 * 109.71178 * 180.57532 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7956 -5.5015 0.0000 13 8 2.8407 -6.3388 -0.0003 14 6 2.2611 -7.6701 -0.0002 15 6 3.3801 -8.7136 -0.0014 16 6 2.7693 -10.1163 -0.0007 17 6 3.8715 -11.1441 -0.0012 18 6 4.3715 -11.6192 -1.1994 19 6 5.3854 -12.5582 -1.2039 20 6 5.8961 -13.0354 -0.0057 21 6 5.3908 -12.5607 1.1987 22 6 4.3767 -11.6143 1.1961 23 8 5.8811 -13.0113 2.3858 24 6 6.6350 -14.2279 2.3505 25 6 7.6304 -14.1430 1.1854 26 8 6.8879 -13.9671 -0.0261 27 1 -0.4850 0.8401 -0.0004 28 1 3.1245 -3.7313 0.8895 29 1 3.1245 -3.7313 -0.8905 30 1 1.6453 -7.7983 0.8900 31 1 1.6446 -7.7981 -0.8900 32 1 3.9955 -8.5853 -0.8917 33 1 3.9970 -8.5858 0.8882 34 1 2.1541 -10.2443 0.8900 35 1 2.1523 -10.2444 -0.8900 36 1 3.9720 -11.2528 -2.1334 37 1 5.7775 -12.9243 -2.1412 38 1 3.9816 -11.2446 2.1307 39 1 7.1765 -14.3521 3.2883 40 1 5.9629 -15.0725 2.1989 41 1 8.2983 -13.2945 1.3337 42 1 8.2113 -15.0636 1.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263617828.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:56 Heat of formation + Delta-G solvation = -166.906193 kcal Electronic energy + Delta-G solvation = -24772.313292 eV Core-core repulsion = 20808.218847 eV Total energy + Delta-G solvation = -3964.094445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.107 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.21649 -41.43817 -39.27323 -38.24362 -37.71337 -35.25219 -34.60660 -32.15346 -31.78642 -31.10083 -29.64967 -27.73029 -27.01135 -25.30430 -23.79860 -22.74438 -22.35138 -21.27295 -19.88078 -19.56868 -18.66580 -18.25400 -18.10538 -17.77482 -17.18205 -16.88755 -16.42901 -16.18807 -16.00734 -15.89467 -15.39933 -15.36417 -15.04612 -14.84578 -14.64706 -14.29140 -14.16631 -14.13803 -13.66807 -13.36682 -13.17620 -12.91456 -12.79515 -12.76258 -12.63910 -12.25895 -12.06566 -11.96375 -11.86500 -11.75443 -11.55790 -11.44019 -11.39814 -11.16912 -10.36787 -9.61257 -9.01518 -8.72900 -8.37067 -6.16670 0.23831 0.30597 1.05180 1.14952 1.42111 1.42690 1.57028 1.91781 2.05029 2.24290 2.29798 2.67148 2.98134 3.27309 3.28922 3.62524 3.66973 3.89459 3.90972 3.93314 4.06368 4.15350 4.19545 4.21887 4.31449 4.33832 4.38782 4.45645 4.50871 4.56837 4.57837 4.62238 4.79897 4.88602 5.09747 5.14119 5.18215 5.20049 5.41528 5.42382 5.59879 5.69700 5.90884 6.19019 6.40577 6.72135 7.04921 8.72463 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.028049 B = 0.001499 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.020616 B =18671.042760 C =19003.142217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.110 4.110 11 C 0.488 3.512 12 O -0.522 6.522 13 O -0.354 6.354 14 C 0.058 3.942 15 C -0.102 4.102 16 C -0.069 4.069 17 C -0.076 4.076 18 C -0.110 4.110 19 C -0.120 4.120 20 C 0.029 3.971 21 C 0.035 3.965 22 C -0.122 4.122 23 O -0.327 6.327 24 C 0.014 3.986 25 C 0.015 3.985 26 O -0.325 6.325 27 H 0.273 0.727 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.151 0.849 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.147 -31.514 1.347 35.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.258 4.258 11 C 0.331 3.669 12 O -0.410 6.410 13 O -0.271 6.271 14 C -0.015 4.015 15 C -0.140 4.140 16 C -0.106 4.106 17 C -0.077 4.077 18 C -0.128 4.128 19 C -0.138 4.138 20 C -0.016 4.016 21 C -0.010 4.010 22 C -0.140 4.140 23 O -0.243 6.243 24 C -0.060 4.060 25 C -0.060 4.060 26 O -0.240 6.240 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.172 0.828 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.568 -31.779 1.388 34.987 hybrid contribution 1.485 0.957 0.248 1.784 sum 16.053 -30.822 1.637 34.790 Atomic orbital electron populations 1.70167 1.07929 1.28729 1.47787 1.26111 0.95974 1.03255 0.93533 0.84884 0.78601 0.76218 0.78119 1.18082 1.19861 1.19886 1.23236 0.95530 0.91597 1.59222 0.89606 1.85516 1.09364 0.99124 1.97166 1.23097 1.04197 0.90277 1.08242 1.22947 0.84775 0.87478 0.71715 1.90658 1.18321 1.86168 1.45859 1.86470 1.40502 1.16216 1.83939 1.23358 0.97405 0.77665 1.03105 1.21488 0.96744 0.91404 1.04367 1.20434 0.95195 0.89949 1.05012 1.19640 0.98094 0.97885 0.92044 1.21138 0.96253 0.96558 0.98830 1.20708 0.98682 0.98249 0.96186 1.19145 0.93099 0.95423 0.93910 1.19063 0.97566 0.99920 0.84415 1.20529 0.95621 0.98242 0.99649 1.86282 1.68538 1.41748 1.27690 1.23935 0.94482 0.85042 1.02571 1.23926 0.93394 1.06024 0.82655 1.86272 1.45324 1.54786 1.37610 0.91841 0.86117 0.86019 0.91105 0.90723 0.90024 0.90761 0.89628 0.88660 0.82763 0.83514 0.84372 0.83164 0.90250 0.90511 0.82932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.87 13.22 21.65 0.29 -54.58 16 2 C 0.02 0.92 5.49 84.86 0.47 1.38 16 3 Si 1.00 43.00 29.55 68.60 2.03 45.03 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 7 C -0.55 -30.83 9.50 67.95 0.65 -30.18 16 8 H 0.09 4.50 7.80 -2.91 -0.02 4.47 16 9 S -0.14 -7.54 20.58 -56.49 -1.16 -8.70 16 10 C -0.11 -4.41 6.27 71.24 0.45 -3.97 16 11 C 0.49 18.52 7.98 71.24 0.57 19.09 16 12 O -0.52 -23.08 15.61 21.96 0.34 -22.74 16 13 O -0.35 -10.73 10.22 -51.40 -0.53 -11.26 16 14 C 0.06 1.35 5.47 71.98 0.39 1.74 16 15 C -0.10 -1.72 5.58 30.59 0.17 -1.55 16 16 C -0.07 -0.91 5.34 29.85 0.16 -0.75 16 17 C -0.08 -1.19 5.13 -19.87 -0.10 -1.29 16 18 C -0.11 -1.58 9.69 22.26 0.22 -1.36 16 19 C -0.12 -1.94 9.96 22.37 0.22 -1.72 16 20 C 0.03 0.55 6.49 22.56 0.15 0.70 16 21 C 0.04 0.69 6.49 22.56 0.15 0.84 16 22 C -0.12 -2.20 9.61 22.37 0.22 -1.99 16 23 O -0.33 -5.94 10.42 -82.58 -0.86 -6.80 16 24 C 0.01 0.14 7.26 72.14 0.52 0.66 16 25 C 0.01 0.14 7.26 72.14 0.52 0.66 16 26 O -0.32 -5.52 10.42 -82.47 -0.86 -6.38 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.12 4.42 8.14 -2.40 -0.02 4.40 16 29 H 0.12 4.44 8.14 -2.40 -0.02 4.42 16 30 H 0.07 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.07 1.69 8.13 -2.38 -0.02 1.67 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.09 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 36 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 37 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.15 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -75.91 376.72 5.02 -70.90 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.02 Total: 12.27 kcal Atomic # 6 Polarization: -22.48 SS G_CDS: 4.74 Total: -17.74 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.29 Total: -54.58 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.90 Total: -47.18 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -7.54 SS G_CDS: -1.16 Total: -8.70 kcal Total: -75.91 5.02 -70.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263617828.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.010 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds