Wall clock time and date at job start Tue Mar 31 2020 20:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48500 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46992 * 299.99834 * 3 2 1 6 6 H 1.48494 * 109.47341 * 59.99908 * 3 2 1 7 7 C 1.38811 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99961 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47006 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47399 * 304.99654 * 11 10 9 13 13 O 1.42894 * 109.47461 * 64.99905 * 11 10 9 14 14 C 1.53002 * 109.47170 * 185.00201 * 11 10 9 15 15 N 1.46495 * 109.47313 * 179.97438 * 14 11 10 16 16 C 1.34783 * 120.00242 * 179.97438 * 15 14 11 17 17 O 1.21749 * 119.99320 * 0.02562 * 16 15 14 18 18 C 1.46234 * 120.00227 * 179.97438 * 16 15 14 19 19 S 1.75816 * 125.47658 * 354.02552 * 18 16 15 20 20 C 1.70568 * 91.67093 * 179.97438 * 19 18 16 21 21 C 1.33595 * 111.16613 * 0.31152 * 20 19 18 22 22 C 1.37312 * 125.47485 * 174.32662 * 18 16 15 23 23 N 1.39996 * 123.48646 * 359.96628 * 22 18 16 24 24 C 1.35107 * 127.39335 * 131.35330 * 23 22 18 25 25 N 1.30732 * 107.26614 * 180.02562 * 24 23 22 26 26 N 1.28424 * 110.65073 * 359.97438 * 25 24 23 27 27 N 1.28947 * 110.21051 * 359.71164 * 26 25 24 28 28 H 0.97000 * 120.00244 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99830 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47189 * 59.99734 * 10 9 7 31 31 H 1.09004 * 109.47115 * 300.00311 * 10 9 7 32 32 H 0.96701 * 114.00083 * 59.99936 * 13 11 10 33 33 H 1.09007 * 109.46986 * 299.99760 * 14 11 10 34 34 H 1.08997 * 109.47257 * 59.99418 * 14 11 10 35 35 H 0.97001 * 120.00441 * 0.02562 * 15 14 11 36 36 H 1.07999 * 124.41596 * 180.02562 * 20 19 18 37 37 H 1.07993 * 122.46392 * 179.74261 * 21 20 19 38 38 H 1.08001 * 126.36816 * 0.03660 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3792 -4.7130 0.8405 13 8 0.3218 -4.8115 -1.2224 14 6 1.8244 -6.1412 0.1246 15 7 0.8724 -7.2547 0.1246 16 6 1.3182 -8.5226 0.2258 17 8 2.5122 -8.7424 0.3178 18 6 0.3678 -9.6340 0.2264 19 16 -1.3833 -9.4792 0.2521 20 6 -1.5833 -11.1730 0.2351 21 6 -0.4026 -11.7979 0.2185 22 6 0.6998 -10.9663 0.2129 23 7 2.0194 -11.4335 0.1958 24 6 2.5643 -12.3819 0.9888 25 7 3.8172 -12.5084 0.6377 26 7 4.1016 -11.7053 -0.3233 27 7 3.0602 -11.0207 -0.6546 28 1 -0.4850 0.8400 -0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8905 32 1 0.8681 -4.9028 -2.0151 33 1 2.5089 -6.2480 -0.7170 34 1 2.3903 -6.1475 1.0561 35 1 -0.0788 -7.0795 0.0510 36 1 -2.5395 -11.6748 0.2419 37 1 -0.3166 -12.8744 0.2101 38 1 2.0588 -12.9333 1.7678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268313278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:21 Heat of formation + Delta-G solvation = 96.967616 kcal Electronic energy + Delta-G solvation = -25692.969136 eV Core-core repulsion = 21701.362277 eV Total energy + Delta-G solvation = -3991.606859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.33202 -40.24163 -38.81138 -37.60599 -34.61430 -34.33335 -34.07223 -32.41475 -31.47374 -30.69451 -29.01013 -26.71219 -25.27781 -24.03424 -23.12840 -22.73524 -21.65544 -21.43656 -20.55849 -19.22875 -17.77702 -17.21980 -16.72369 -16.51180 -16.23042 -16.18523 -16.07651 -15.15785 -15.10268 -15.01017 -14.50647 -14.06402 -13.97252 -13.75445 -13.58854 -13.12979 -12.97885 -12.72929 -12.57618 -12.40216 -11.94012 -11.86819 -11.47387 -11.19700 -11.00381 -10.86090 -10.74458 -10.67219 -10.35957 -10.17444 -9.86650 -9.67430 -9.59843 -9.28449 -9.24343 -8.94805 -6.98319 -5.80176 -3.09983 -0.43733 0.50021 0.70083 1.02743 1.51796 1.73171 2.10965 2.69316 2.78638 3.41253 3.47158 3.49273 3.81238 4.02060 4.18784 4.40477 4.49140 4.51909 4.63809 4.76070 4.83427 4.91927 5.11682 5.13988 5.20407 5.33665 5.51094 5.53271 5.68735 5.86204 6.06033 6.07802 6.19272 6.45713 6.60508 7.13887 7.65919 7.80905 7.87569 8.23751 8.37897 9.49858 10.05339 10.41083 11.42246 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002250 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.723153 B =12440.120974 C =13655.343493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.127 3.873 11 C 0.089 3.911 12 H 0.106 0.894 13 O -0.553 6.553 14 C 0.091 3.909 15 N -0.712 5.712 16 C 0.579 3.421 17 O -0.507 6.507 18 C -0.247 4.247 19 S 0.296 5.704 20 C -0.222 4.222 21 C -0.143 4.143 22 C 0.172 3.828 23 N -0.319 5.319 24 C 0.228 3.772 25 N -0.333 5.333 26 N -0.045 5.045 27 N -0.024 5.024 28 H 0.255 0.745 29 H 0.388 0.612 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.375 0.625 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.402 0.598 36 H 0.185 0.815 37 H 0.158 0.842 38 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -28.681 2.256 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.371 5.371 10 C -0.001 4.001 11 C 0.029 3.971 12 H 0.124 0.876 13 O -0.358 6.358 14 C -0.033 4.033 15 N -0.364 5.364 16 C 0.363 3.637 17 O -0.383 6.383 18 C -0.372 4.372 19 S 0.563 5.437 20 C -0.361 4.361 21 C -0.175 4.175 22 C 0.064 3.936 23 N -0.111 5.111 24 C -0.071 4.071 25 N -0.181 5.181 26 N -0.041 5.041 27 N -0.010 5.010 28 H 0.065 0.935 29 H 0.223 0.777 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.222 0.778 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.203 0.797 37 H 0.175 0.825 38 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -6.827 -27.109 1.993 28.026 hybrid contribution 0.145 -0.439 0.112 0.476 sum -6.682 -27.548 2.105 28.425 Atomic orbital electron populations 1.69682 1.05118 1.25609 1.57427 1.24762 0.95548 0.97762 1.02789 0.86105 0.78802 0.83979 0.77221 1.20517 1.21790 1.21802 1.19263 0.91051 0.84041 1.43074 0.91125 1.42239 1.06055 0.99387 1.89392 1.21191 0.93443 0.86485 0.99011 1.22411 0.94664 0.91683 0.88346 0.87631 1.86565 1.37570 1.96222 1.15436 1.22198 0.92002 0.85394 1.03710 1.45743 1.11175 1.05173 1.74312 1.16688 0.87234 0.81766 0.78007 1.90949 1.14936 1.83997 1.48415 1.24904 0.99889 0.96670 1.15692 1.83500 0.94777 1.01563 1.63816 1.25178 1.03133 1.00071 1.07669 1.19634 0.89484 1.01811 1.06587 1.16552 0.81040 0.90698 1.05343 1.48374 1.08864 1.28077 1.25750 1.27442 0.91313 0.91351 0.96957 1.74433 1.11820 1.20507 1.11327 1.78089 1.17792 1.01445 1.06741 1.82914 0.89822 1.16719 1.11513 0.93504 0.77730 0.95298 0.95769 0.77800 0.90462 0.90032 0.76277 0.79726 0.82478 0.74762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.06 5.55 -59.91 -0.33 -18.39 16 10 C 0.13 2.41 5.90 -4.04 -0.02 2.39 16 11 C 0.09 1.30 3.09 -26.73 -0.08 1.21 16 12 H 0.11 1.57 8.14 -51.92 -0.42 1.15 16 13 O -0.55 -8.20 13.03 -35.23 -0.46 -8.66 16 14 C 0.09 1.15 5.34 -4.04 -0.02 1.13 16 15 N -0.71 -8.00 5.44 -61.76 -0.34 -8.34 16 16 C 0.58 7.31 7.76 -13.05 -0.10 7.21 16 17 O -0.51 -8.38 14.14 5.15 0.07 -8.31 16 18 C -0.25 -2.30 6.46 -36.71 -0.24 -2.54 16 19 S 0.30 1.48 22.16 -107.50 -2.38 -0.90 16 20 C -0.22 -0.73 10.90 29.11 0.32 -0.41 16 21 C -0.14 -0.68 9.99 -41.26 -0.41 -1.09 16 22 C 0.17 1.50 6.36 -84.52 -0.54 0.96 16 23 N -0.32 -3.52 3.24 -12.33 -0.04 -3.56 16 24 C 0.23 2.01 12.68 -90.12 -1.14 0.86 16 25 N -0.33 -4.24 12.15 29.65 0.36 -3.88 16 26 N -0.05 -0.70 13.39 60.35 0.81 0.11 16 27 N -0.02 -0.37 11.70 60.35 0.71 0.34 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 29 H 0.39 10.29 7.67 -40.82 -0.31 9.97 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.37 4.64 9.05 45.56 0.41 5.06 16 33 H 0.08 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.40 3.80 7.47 -40.82 -0.31 3.49 16 36 H 0.19 0.05 8.06 -52.49 -0.42 -0.38 16 37 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.24 0.65 8.06 -52.49 -0.42 0.22 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -38.12 353.90 -6.19 -44.31 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -3.13 Total: 9.60 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.49 Total: 2.35 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 1.89 Total: -61.03 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.39 Total: -16.97 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.38 Total: -0.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -38.12 -6.19 -44.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268313278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.274 kcal (2) G-P(sol) polarization free energy of solvation -38.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds