Wall clock time and date at job start Tue Mar 31 2020 20:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00070 * 2 1 4 4 H 1.48500 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46992 * 299.99834 * 3 2 1 6 6 H 1.48494 * 109.47341 * 59.99908 * 3 2 1 7 7 C 1.38811 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99961 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47006 * 180.02562 * 10 9 7 12 12 H 1.09008 * 109.47399 * 304.99654 * 11 10 9 13 13 O 1.42894 * 109.47461 * 64.99905 * 11 10 9 14 14 C 1.53002 * 109.47170 * 185.00201 * 11 10 9 15 15 N 1.46495 * 109.47313 * 179.97438 * 14 11 10 16 16 C 1.34783 * 120.00242 * 179.97438 * 15 14 11 17 17 O 1.21749 * 119.99320 * 0.02562 * 16 15 14 18 18 C 1.46234 * 120.00227 * 179.97438 * 16 15 14 19 19 S 1.75816 * 125.47658 * 354.02552 * 18 16 15 20 20 C 1.70568 * 91.67093 * 179.97438 * 19 18 16 21 21 C 1.33595 * 111.16613 * 0.31152 * 20 19 18 22 22 C 1.37312 * 125.47485 * 174.32662 * 18 16 15 23 23 N 1.39996 * 123.48646 * 359.96628 * 22 18 16 24 24 C 1.35107 * 127.39335 * 131.35330 * 23 22 18 25 25 N 1.30732 * 107.26614 * 180.02562 * 24 23 22 26 26 N 1.28424 * 110.65073 * 359.97438 * 25 24 23 27 27 N 1.28947 * 110.21051 * 359.71164 * 26 25 24 28 28 H 0.97000 * 120.00244 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99830 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47189 * 59.99734 * 10 9 7 31 31 H 1.09004 * 109.47115 * 300.00311 * 10 9 7 32 32 H 0.96701 * 114.00083 * 59.99936 * 13 11 10 33 33 H 1.09007 * 109.46986 * 299.99760 * 14 11 10 34 34 H 1.08997 * 109.47257 * 59.99418 * 14 11 10 35 35 H 0.97001 * 120.00441 * 0.02562 * 15 14 11 36 36 H 1.07999 * 124.41596 * 180.02562 * 20 19 18 37 37 H 1.07993 * 122.46392 * 179.74261 * 21 20 19 38 38 H 1.08001 * 126.36816 * 0.03660 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3792 -4.7130 0.8405 13 8 0.3218 -4.8115 -1.2224 14 6 1.8244 -6.1412 0.1246 15 7 0.8724 -7.2547 0.1246 16 6 1.3182 -8.5226 0.2258 17 8 2.5122 -8.7424 0.3178 18 6 0.3678 -9.6340 0.2264 19 16 -1.3833 -9.4792 0.2521 20 6 -1.5833 -11.1730 0.2351 21 6 -0.4026 -11.7979 0.2185 22 6 0.6998 -10.9663 0.2129 23 7 2.0194 -11.4335 0.1958 24 6 2.5643 -12.3819 0.9888 25 7 3.8172 -12.5084 0.6377 26 7 4.1016 -11.7053 -0.3233 27 7 3.0602 -11.0207 -0.6546 28 1 -0.4850 0.8400 -0.0004 29 1 0.3554 -2.3881 -0.0005 30 1 2.6846 -3.7146 0.8894 31 1 2.6846 -3.7146 -0.8905 32 1 0.8681 -4.9028 -2.0151 33 1 2.5089 -6.2480 -0.7170 34 1 2.3903 -6.1475 1.0561 35 1 -0.0788 -7.0795 0.0510 36 1 -2.5395 -11.6748 0.2419 37 1 -0.3166 -12.8744 0.2101 38 1 2.0588 -12.9333 1.7678 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268313278.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:21 Heat of formation + Delta-G solvation = 65.013078 kcal Electronic energy + Delta-G solvation = -25694.354789 eV Core-core repulsion = 21701.362277 eV Total energy + Delta-G solvation = -3992.992512 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.17537 -41.11829 -39.55198 -38.77241 -36.13596 -35.45606 -35.05459 -33.28936 -33.24854 -31.62616 -30.21549 -27.70629 -26.64796 -24.74336 -24.52591 -23.75706 -22.85710 -22.45037 -21.22352 -20.04766 -19.20800 -18.47831 -17.65150 -17.50146 -17.29222 -17.01749 -16.88094 -16.47184 -16.10651 -16.04353 -15.53206 -15.34057 -14.98534 -14.81583 -14.68973 -14.29578 -14.20944 -13.85623 -13.63077 -13.43197 -13.27814 -12.98257 -12.80029 -12.32741 -12.19449 -12.14829 -12.01542 -11.99498 -11.85048 -11.61644 -11.34503 -11.03638 -10.96507 -10.42196 -10.03197 -9.68522 -9.03489 -7.97111 -5.26559 -1.02561 -0.02695 0.05274 0.64783 0.97173 1.13016 1.25889 1.46994 1.47408 1.57589 1.81481 1.91585 2.54212 3.25002 3.32789 3.40718 3.47666 3.50712 3.63515 3.75510 3.94894 4.11649 4.14774 4.15887 4.33007 4.36030 4.54084 4.56976 4.64023 4.84775 4.89279 4.90073 5.12146 5.17469 5.44728 5.46826 6.24024 6.25943 6.73080 6.95167 7.31826 7.35266 8.05718 8.29707 9.26210 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.019621 B = 0.002250 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.723153 B =12440.120974 C =13655.343493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.248 4.248 8 H 0.074 0.926 9 N -0.739 5.739 10 C 0.123 3.877 11 C 0.110 3.890 12 H 0.106 0.894 13 O -0.560 6.560 14 C 0.104 3.896 15 N -0.705 5.705 16 C 0.576 3.424 17 O -0.557 6.557 18 C -0.295 4.295 19 S 0.339 5.661 20 C -0.193 4.193 21 C -0.146 4.146 22 C 0.161 3.839 23 N -0.318 5.318 24 C 0.247 3.753 25 N -0.363 5.363 26 N -0.078 5.078 27 N -0.066 5.066 28 H 0.252 0.748 29 H 0.378 0.622 30 H 0.033 0.967 31 H 0.029 0.971 32 H 0.386 0.614 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.412 0.588 36 H 0.227 0.773 37 H 0.187 0.813 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -30.560 2.888 32.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.380 4.380 8 H 0.092 0.908 9 N -0.382 5.382 10 C -0.005 4.005 11 C 0.050 3.950 12 H 0.124 0.876 13 O -0.367 6.367 14 C -0.020 4.020 15 N -0.357 5.357 16 C 0.363 3.637 17 O -0.436 6.436 18 C -0.419 4.419 19 S 0.607 5.393 20 C -0.332 4.332 21 C -0.176 4.176 22 C 0.052 3.948 23 N -0.110 5.110 24 C -0.050 4.050 25 N -0.212 5.212 26 N -0.073 5.073 27 N -0.052 5.052 28 H 0.061 0.939 29 H 0.210 0.790 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.235 0.765 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.249 0.751 36 H 0.243 0.757 37 H 0.204 0.796 38 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -8.948 -29.006 2.613 30.467 hybrid contribution 0.657 0.040 -0.051 0.660 sum -8.292 -28.966 2.562 30.238 Atomic orbital electron populations 1.69826 1.06558 1.26085 1.59198 1.25574 0.96430 1.01106 1.03519 0.85077 0.78155 0.79769 0.76756 1.19215 1.21940 1.21862 1.19651 0.91459 0.85341 1.41543 0.90760 1.42402 1.05766 1.00658 1.89374 1.21387 0.94220 0.85797 0.99088 1.22080 0.93561 0.90890 0.88459 0.87648 1.86542 1.38057 1.96169 1.15938 1.21884 0.91853 0.84993 1.03306 1.45601 1.11345 1.04676 1.74066 1.17154 0.87308 0.82514 0.76740 1.90924 1.17197 1.84752 1.50734 1.24730 1.02041 0.95785 1.19352 1.83409 0.90801 1.02979 1.62131 1.25725 1.04308 0.99018 1.04131 1.19845 0.88236 1.02911 1.06629 1.17156 0.80770 0.91295 1.05617 1.48480 1.09275 1.27995 1.25252 1.28487 0.90170 0.90000 0.96377 1.74318 1.14150 1.21086 1.11627 1.78050 1.18715 1.02429 1.08106 1.82813 0.90923 1.17883 1.13569 0.93908 0.78979 0.94937 0.95271 0.76539 0.90949 0.90504 0.75140 0.75661 0.79551 0.69079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 3 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -36.96 5.55 -343.45 -1.91 -38.87 16 10 C 0.12 4.63 5.90 86.38 0.51 5.14 16 11 C 0.11 3.18 3.09 30.59 0.09 3.28 16 12 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 13 O -0.56 -16.30 13.03 -148.98 -1.94 -18.24 16 14 C 0.10 2.66 5.34 86.38 0.46 3.12 16 15 N -0.70 -15.73 5.44 -467.49 -2.54 -18.27 16 16 C 0.58 14.73 7.76 86.32 0.67 15.40 16 17 O -0.56 -19.26 14.14 -4.50 -0.06 -19.32 16 18 C -0.30 -5.16 6.46 24.13 0.16 -5.00 16 19 S 0.34 2.34 22.16 -56.49 -1.25 1.09 16 20 C -0.19 -0.31 10.90 66.77 0.73 0.42 16 21 C -0.15 -0.79 9.99 21.18 0.21 -0.57 16 22 C 0.16 2.51 6.36 37.58 0.24 2.75 16 23 N -0.32 -6.83 3.24 -192.92 -0.63 -7.45 16 24 C 0.25 3.98 12.68 180.17 2.29 6.27 16 25 N -0.36 -9.31 12.15 -60.11 -0.73 -10.04 16 26 N -0.08 -2.50 13.39 37.02 0.50 -2.01 16 27 N -0.07 -2.07 11.70 37.02 0.43 -1.64 16 28 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 29 H 0.38 20.26 7.67 -92.71 -0.71 19.55 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.39 9.34 9.05 -74.06 -0.67 8.67 16 33 H 0.07 1.93 8.14 -2.38 -0.02 1.92 16 34 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 35 H 0.41 7.42 7.47 -92.71 -0.69 6.73 16 36 H 0.23 -1.43 8.06 -2.91 -0.02 -1.46 16 37 H 0.19 -0.12 8.06 -2.91 -0.02 -0.14 16 38 H 0.29 0.48 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -87.40 353.90 -0.08 -87.48 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: -0.91 Total: 23.75 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.66 Total: 14.04 kcal Atomic # 7 Polarization: -132.35 SS G_CDS: -4.59 Total: -136.94 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -2.00 Total: -37.56 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.25 Total: 1.09 kcal Total: -87.40 -0.08 -87.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268313278.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.494 kcal (2) G-P(sol) polarization free energy of solvation -87.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds