Wall clock time and date at job start Tue Mar 31 2020 20:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 110.54053 * 2 1 4 4 O 1.42103 * 110.54106 * 223.24837 * 2 1 3 5 5 N 1.65598 * 104.44788 * 111.62379 * 2 1 3 6 6 C 1.46606 * 125.31682 * 90.00315 * 5 2 1 7 7 C 1.53467 * 108.10697 * 178.70068 * 6 5 2 8 8 F 1.39896 * 113.05096 * 220.51197 * 7 6 5 9 9 C 1.54091 * 109.74063 * 92.63875 * 7 6 5 10 10 N 1.46758 * 105.61055 * 224.10658 * 9 7 6 11 11 C 1.46496 * 124.34190 * 197.11529 * 10 9 7 12 12 C 1.52998 * 109.47238 * 269.72839 * 11 10 9 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.34373 * 111.31751 * 16.85468 * 10 9 7 22 22 O 1.21282 * 124.87894 * 180.21258 * 21 10 9 23 23 C 1.51327 * 110.24435 * 0.22526 * 21 10 9 24 24 F 1.39893 * 112.99013 * 220.08265 * 23 21 10 25 25 C 1.46677 * 125.31586 * 270.01955 * 5 2 1 26 26 H 1.09003 * 109.47069 * 308.38070 * 1 2 3 27 27 H 1.09000 * 109.47110 * 68.37117 * 1 2 3 28 28 H 1.08995 * 109.47251 * 188.37812 * 1 2 3 29 29 H 1.08997 * 109.74801 * 59.02806 * 6 5 2 30 30 H 1.09007 * 109.73004 * 298.36290 * 6 5 2 31 31 H 1.08992 * 110.30792 * 105.00731 * 9 7 6 32 32 H 1.09003 * 110.08432 * 343.08556 * 9 7 6 33 33 H 1.09000 * 109.47435 * 149.72743 * 11 10 9 34 34 H 1.09002 * 109.46784 * 29.72378 * 11 10 9 35 35 H 1.09001 * 109.47671 * 59.99927 * 12 11 10 36 36 H 1.08998 * 109.47454 * 299.99925 * 12 11 10 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.97102 * 78.84067 * 25 5 2 39 39 H 1.08999 * 109.97983 * 317.55490 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4387 -2.0055 1.8129 7 6 2.8364 -2.1035 3.2919 8 9 3.8497 -3.0393 3.5257 9 6 1.5798 -2.3283 4.1549 10 7 1.7246 -1.4286 5.3053 11 6 0.9646 -1.5518 6.5516 12 6 -0.3230 -0.7322 6.4469 13 6 -1.1052 -0.8594 7.7288 14 1 -0.7222 -1.4647 8.5371 15 6 -2.3069 -0.1989 7.8717 16 7 -2.9892 -0.3095 8.9905 17 14 -2.9654 0.8542 6.4764 18 1 -3.8129 0.0217 5.5852 19 1 -3.7771 1.9652 7.0352 20 1 -1.8299 1.4130 5.6995 21 6 2.6478 -0.4807 5.0709 22 8 2.9655 0.3872 5.8562 23 6 3.2338 -0.6515 3.6862 24 9 4.6140 -0.4273 3.6455 25 6 2.4383 0.2191 2.6952 26 1 -0.3633 0.6381 0.8056 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0166 0.1497 29 1 3.2362 -2.4099 1.1895 30 1 1.5182 -2.5636 1.6412 31 1 1.5316 -3.3643 4.4902 32 1 0.6851 -2.0731 3.5870 33 1 1.5654 -1.1802 7.3818 34 1 0.7157 -2.5990 6.7233 35 1 -0.9239 -1.1037 5.6168 36 1 -0.0742 0.3151 6.2751 37 1 -3.8345 0.1554 9.0911 38 1 1.4782 0.4962 3.1305 39 1 3.0074 1.1148 2.4466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274905018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:48 Heat of formation + Delta-G solvation = -170.890163 kcal Electronic energy + Delta-G solvation = -28958.646316 eV Core-core repulsion = 24472.442335 eV Total energy + Delta-G solvation = -4486.203982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.67346 -47.66560 -40.80642 -38.06402 -37.58922 -36.41919 -36.07998 -33.65500 -31.93118 -30.32552 -29.99571 -29.58547 -26.54200 -25.67016 -23.49882 -21.78672 -21.18641 -20.08363 -19.46514 -18.43836 -17.40773 -17.09998 -17.01827 -16.79954 -16.63314 -16.14307 -15.80351 -15.48771 -15.27849 -15.01766 -14.49817 -14.30207 -14.12914 -14.09231 -13.78843 -13.74653 -13.54565 -13.26114 -13.18025 -12.99903 -12.82171 -12.76631 -12.54853 -12.49505 -12.36304 -11.84145 -11.67823 -11.49075 -11.23622 -11.11148 -10.72748 -10.24463 -10.07571 -9.73378 -9.67808 -9.42565 -8.70955 -8.65787 -6.20131 -4.20654 -0.32518 1.96020 2.21729 2.71425 2.98952 3.15146 3.25771 3.26847 3.31878 3.32065 3.39731 3.65113 3.81500 3.99234 4.11019 4.29505 4.30059 4.48214 4.55873 4.74113 4.97120 5.04038 5.07596 5.13150 5.14896 5.24642 5.29704 5.44610 5.56136 5.62679 6.04351 6.28342 6.36543 6.78344 7.03315 7.20862 7.56018 7.95698 8.32382 8.82354 9.40410 10.92847 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.004356 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.201601 B = 6425.825253 C = 7695.736182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.671 4.671 2 S 2.629 3.371 3 O -0.943 6.943 4 O -0.945 6.945 5 N -1.009 6.009 6 C 0.111 3.889 7 C 0.085 3.915 8 F -0.160 7.160 9 C 0.087 3.913 10 N -0.603 5.603 11 C 0.137 3.863 12 C -0.025 4.025 13 C -0.525 4.525 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.879 3.121 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.507 3.493 22 O -0.489 6.489 23 C 0.066 3.934 24 F -0.154 7.154 25 C 0.111 3.889 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.014 0.986 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.053 -4.506 -19.642 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.821 4.821 2 S 2.723 3.277 3 O -0.933 6.933 4 O -0.935 6.935 5 N -0.845 5.845 6 C -0.015 4.015 7 C 0.064 3.936 8 F -0.140 7.140 9 C -0.037 4.037 10 N -0.336 5.336 11 C 0.018 3.982 12 C -0.063 4.063 13 C -0.564 4.564 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.535 5.535 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.191 1.191 21 C 0.289 3.711 22 O -0.362 6.362 23 C 0.041 3.959 24 F -0.134 7.134 25 C -0.015 4.015 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.632 -3.707 -19.765 21.510 hybrid contribution -0.963 0.306 -0.267 1.045 sum 6.669 -3.401 -20.032 21.385 Atomic orbital electron populations 1.30548 1.27380 1.12185 1.12009 1.04566 0.77831 0.73947 0.71369 1.93640 1.77728 1.37139 1.84822 1.93628 1.77772 1.61837 1.60301 1.58445 1.85566 1.13916 1.26600 1.21826 1.04155 0.82366 0.93159 1.22553 0.87640 0.86549 0.96822 1.92967 1.60334 1.65350 1.95349 1.22724 0.95415 0.97841 0.87714 1.48450 1.39412 1.28838 1.16924 1.21822 0.93162 1.01754 0.81474 1.19927 0.92262 0.95894 0.98256 1.20894 1.04611 1.31233 0.99624 0.90637 1.24965 0.96551 0.95947 0.95565 1.69889 1.15001 1.43167 1.25418 0.86799 0.79156 0.80641 0.82809 1.20285 1.21122 1.19092 1.20214 0.80891 0.82742 0.87272 1.90804 1.61673 1.33831 1.49896 1.22654 0.79544 0.96050 0.97622 1.92964 1.27977 1.95280 1.97154 1.22064 1.01285 0.94628 0.83550 0.84841 0.84967 0.84938 0.88019 0.88399 0.87388 0.87955 0.89722 0.90041 0.96769 0.95929 0.92471 0.88269 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.95 10.99 101.05 1.11 -1.84 16 2 S 2.63 20.64 6.27 -107.50 -0.67 19.97 16 3 O -0.94 -10.83 17.30 -57.54 -1.00 -11.82 16 4 O -0.94 -9.84 17.58 -57.54 -1.01 -10.85 16 5 N -1.01 -8.43 3.60 -113.30 -0.41 -8.84 16 6 C 0.11 0.82 6.10 -3.74 -0.02 0.80 16 7 C 0.09 0.87 1.89 -88.41 -0.17 0.70 16 8 F -0.16 -1.84 17.07 2.25 0.04 -1.81 16 9 C 0.09 0.85 6.49 -3.33 -0.02 0.83 16 10 N -0.60 -8.85 2.93 -172.66 -0.51 -9.36 16 11 C 0.14 2.40 5.87 -4.04 -0.02 2.38 16 12 C -0.03 -0.54 4.37 -27.88 -0.12 -0.66 16 13 C -0.53 -13.88 9.66 -34.44 -0.33 -14.21 16 14 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 17 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.27 -5.93 6.53 56.52 0.37 -5.56 16 21 C 0.51 8.26 6.85 -10.86 -0.07 8.19 16 22 O -0.49 -9.99 17.59 5.56 0.10 -9.89 16 23 C 0.07 0.86 1.84 -89.53 -0.16 0.69 16 24 F -0.15 -2.30 17.06 2.25 0.04 -2.26 16 25 C 0.11 1.16 6.23 -3.41 -0.02 1.14 16 26 H 0.13 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.13 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.10 0.36 7.63 -51.92 -0.40 -0.04 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.75 7.55 -51.93 -0.39 0.36 16 33 H 0.08 1.63 7.92 -51.93 -0.41 1.22 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.01 0.28 7.58 -51.93 -0.39 -0.11 16 36 H 0.02 0.52 7.18 -51.93 -0.37 0.15 16 37 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 0.93 7.70 -51.93 -0.40 0.53 16 39 H 0.12 1.22 7.74 -51.93 -0.40 0.82 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -37.04 345.78 -6.93 -43.97 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -4.89 Total: -4.28 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 0.06 Total: -0.10 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.14 Total: -43.80 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.91 Total: -32.57 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.08 Total: -4.06 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Atomic # 16 Polarization: 20.64 SS G_CDS: -0.67 Total: 19.97 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -37.04 -6.93 -43.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274905018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.921 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds