Wall clock time and date at job start Tue Mar 31 2020 20:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42099 * 110.54053 * 2 1 4 4 O 1.42103 * 110.54106 * 223.24837 * 2 1 3 5 5 N 1.65598 * 104.44788 * 111.62379 * 2 1 3 6 6 C 1.46606 * 125.31682 * 90.00315 * 5 2 1 7 7 C 1.53467 * 108.10697 * 178.70068 * 6 5 2 8 8 F 1.39896 * 113.05096 * 220.51197 * 7 6 5 9 9 C 1.54091 * 109.74063 * 92.63875 * 7 6 5 10 10 N 1.46758 * 105.61055 * 224.10658 * 9 7 6 11 11 C 1.46496 * 124.34190 * 197.11529 * 10 9 7 12 12 C 1.52998 * 109.47238 * 269.72839 * 11 10 9 13 13 C 1.50706 * 109.47348 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72505 * 13 12 11 16 16 N 1.31514 * 120.00481 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 119.99745 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47209 * 90.00365 * 17 15 13 19 19 H 1.48506 * 109.47294 * 210.00213 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00116 * 17 15 13 21 21 C 1.34373 * 111.31751 * 16.85468 * 10 9 7 22 22 O 1.21282 * 124.87894 * 180.21258 * 21 10 9 23 23 C 1.51327 * 110.24435 * 0.22526 * 21 10 9 24 24 F 1.39893 * 112.99013 * 220.08265 * 23 21 10 25 25 C 1.46677 * 125.31586 * 270.01955 * 5 2 1 26 26 H 1.09003 * 109.47069 * 308.38070 * 1 2 3 27 27 H 1.09000 * 109.47110 * 68.37117 * 1 2 3 28 28 H 1.08995 * 109.47251 * 188.37812 * 1 2 3 29 29 H 1.08997 * 109.74801 * 59.02806 * 6 5 2 30 30 H 1.09007 * 109.73004 * 298.36290 * 6 5 2 31 31 H 1.08992 * 110.30792 * 105.00731 * 9 7 6 32 32 H 1.09003 * 110.08432 * 343.08556 * 9 7 6 33 33 H 1.09000 * 109.47435 * 149.72743 * 11 10 9 34 34 H 1.09002 * 109.46784 * 29.72378 * 11 10 9 35 35 H 1.09001 * 109.47671 * 59.99927 * 12 11 10 36 36 H 1.08998 * 109.47454 * 299.99925 * 12 11 10 37 37 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 38 38 H 1.09001 * 109.97102 * 78.84067 * 25 5 2 39 39 H 1.08999 * 109.97983 * 317.55490 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5909 1.4908 6 6 2.4387 -2.0055 1.8129 7 6 2.8364 -2.1035 3.2919 8 9 3.8497 -3.0393 3.5257 9 6 1.5798 -2.3283 4.1549 10 7 1.7246 -1.4286 5.3053 11 6 0.9646 -1.5518 6.5516 12 6 -0.3230 -0.7322 6.4469 13 6 -1.1052 -0.8594 7.7288 14 1 -0.7222 -1.4647 8.5371 15 6 -2.3069 -0.1989 7.8717 16 7 -2.9892 -0.3095 8.9905 17 14 -2.9654 0.8542 6.4764 18 1 -3.8129 0.0217 5.5852 19 1 -3.7771 1.9652 7.0352 20 1 -1.8299 1.4130 5.6995 21 6 2.6478 -0.4807 5.0709 22 8 2.9655 0.3872 5.8562 23 6 3.2338 -0.6515 3.6862 24 9 4.6140 -0.4273 3.6455 25 6 2.4383 0.2191 2.6952 26 1 -0.3633 0.6381 0.8056 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0166 0.1497 29 1 3.2362 -2.4099 1.1895 30 1 1.5182 -2.5636 1.6412 31 1 1.5316 -3.3643 4.4902 32 1 0.6851 -2.0731 3.5870 33 1 1.5654 -1.1802 7.3818 34 1 0.7157 -2.5990 6.7233 35 1 -0.9239 -1.1037 5.6168 36 1 -0.0742 0.3151 6.2751 37 1 -3.8345 0.1554 9.0911 38 1 1.4782 0.4962 3.1305 39 1 3.0074 1.1148 2.4466 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274905018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:48 Heat of formation + Delta-G solvation = -200.721245 kcal Electronic energy + Delta-G solvation = -28959.939889 eV Core-core repulsion = 24472.442335 eV Total energy + Delta-G solvation = -4487.497554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.094 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.63394 -48.64128 -41.87194 -39.04756 -38.27283 -37.32550 -37.08218 -35.36194 -33.46845 -31.13585 -30.99812 -30.24843 -27.45214 -27.10788 -24.53945 -23.02141 -22.36503 -21.20590 -20.22072 -19.21277 -18.98660 -18.31569 -17.97692 -17.49567 -17.36156 -17.23962 -16.74525 -16.45080 -16.28067 -16.19848 -15.96157 -15.44172 -15.12748 -15.06326 -14.77721 -14.67252 -14.49003 -14.24314 -14.01667 -13.93740 -13.84641 -13.53560 -13.47529 -13.35595 -13.24641 -13.15004 -12.90030 -12.58224 -12.31797 -12.05391 -12.04107 -11.91187 -11.73495 -11.49813 -10.95840 -10.75901 -10.28037 -9.92981 -8.28640 -6.34515 -0.86891 1.01412 1.32948 1.34806 1.41706 1.50905 1.62083 2.12044 2.37018 2.49329 2.50182 2.85190 2.93228 3.05487 3.07347 3.13930 3.32992 3.80754 3.99030 4.16271 4.19508 4.21558 4.31671 4.40351 4.41624 4.44747 4.53457 4.54820 4.76592 4.78562 4.95210 5.00599 5.02241 5.27140 5.41476 5.63631 5.84471 6.23336 6.69219 6.76019 7.30626 8.87714 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.012518 B = 0.004356 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.201601 B = 6425.825253 C = 7695.736182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.632 3.368 3 O -0.990 6.990 4 O -0.976 6.976 5 N -1.008 6.008 6 C 0.109 3.891 7 C 0.093 3.907 8 F -0.171 7.171 9 C 0.080 3.920 10 N -0.600 5.600 11 C 0.147 3.853 12 C -0.017 4.017 13 C -0.533 4.533 14 H 0.037 0.963 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.948 3.052 18 H -0.251 1.251 19 H -0.293 1.293 20 H -0.250 1.250 21 C 0.497 3.503 22 O -0.547 6.547 23 C 0.054 3.946 24 F -0.172 7.172 25 C 0.115 3.885 26 H 0.145 0.855 27 H 0.150 0.850 28 H 0.162 0.838 29 H 0.101 0.899 30 H 0.150 0.850 31 H 0.134 0.866 32 H 0.144 0.856 33 H 0.054 0.946 34 H 0.105 0.895 35 H 0.045 0.955 36 H 0.007 0.993 37 H 0.266 0.734 38 H 0.115 0.885 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -5.718 -23.099 24.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.731 3.269 3 O -0.981 6.981 4 O -0.966 6.966 5 N -0.844 5.844 6 C -0.016 4.016 7 C 0.072 3.928 8 F -0.151 7.151 9 C -0.042 4.042 10 N -0.332 5.332 11 C 0.027 3.973 12 C -0.055 4.055 13 C -0.571 4.571 14 H 0.055 0.945 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.175 1.175 19 H -0.219 1.219 20 H -0.174 1.174 21 C 0.281 3.719 22 O -0.424 6.424 23 C 0.030 3.970 24 F -0.152 7.152 25 C -0.011 4.011 26 H 0.163 0.837 27 H 0.168 0.832 28 H 0.180 0.820 29 H 0.119 0.881 30 H 0.168 0.832 31 H 0.152 0.848 32 H 0.162 0.838 33 H 0.073 0.927 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.075 0.925 38 H 0.133 0.867 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.688 -4.978 -23.273 24.469 hybrid contribution -0.312 0.626 0.896 1.137 sum 5.376 -4.352 -22.376 23.421 Atomic orbital electron populations 1.30350 1.21448 1.14629 1.13615 1.04325 0.79714 0.72354 0.70512 1.93583 1.80021 1.39243 1.85236 1.93587 1.79773 1.62224 1.61045 1.58342 1.86306 1.14049 1.25669 1.22084 1.06763 0.82226 0.90570 1.22730 0.87153 0.84068 0.98848 1.92952 1.61058 1.65471 1.95594 1.23256 0.96522 0.98237 0.86135 1.48394 1.38262 1.29175 1.17344 1.21425 0.91413 1.02168 0.82278 1.19797 0.93552 0.95757 0.96441 1.21268 1.04977 1.30067 1.00813 0.94461 1.25976 0.97032 0.97556 0.98455 1.70060 1.15784 1.44958 1.28178 0.85696 0.78965 0.78620 0.79601 1.17515 1.21916 1.17354 1.20845 0.80871 0.82072 0.88161 1.90761 1.63520 1.36176 1.51986 1.22870 0.78715 0.99336 0.96084 1.92918 1.29560 1.95659 1.97102 1.21959 1.01353 0.94048 0.83764 0.83662 0.83203 0.81976 0.88119 0.83193 0.84820 0.83821 0.92744 0.87705 0.93712 0.97489 0.92477 0.86717 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.04 10.99 113.37 1.25 -0.80 16 2 S 2.63 34.00 6.27 -56.49 -0.35 33.64 16 3 O -0.99 -21.78 17.30 -127.65 -2.21 -23.99 16 4 O -0.98 -18.01 17.58 -127.65 -2.24 -20.25 16 5 N -1.01 -13.60 3.60 -512.37 -1.84 -15.44 16 6 C 0.11 1.14 6.10 86.52 0.53 1.67 16 7 C 0.09 1.60 1.89 -9.37 -0.02 1.58 16 8 F -0.17 -3.57 17.07 44.97 0.77 -2.81 16 9 C 0.08 1.20 6.49 86.70 0.56 1.76 16 10 N -0.60 -16.36 2.93 -818.80 -2.40 -18.76 16 11 C 0.15 5.03 5.87 86.38 0.51 5.53 16 12 C -0.02 -0.71 4.37 29.85 0.13 -0.57 16 13 C -0.53 -28.35 9.66 25.60 0.25 -28.11 16 14 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 15 C 0.01 0.39 5.47 84.65 0.46 0.85 16 16 N -0.95 -57.04 13.96 21.45 0.30 -56.74 16 17 Si 0.95 40.58 27.47 68.60 1.88 42.46 16 18 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.25 -9.94 6.53 99.48 0.65 -9.29 16 21 C 0.50 16.05 6.85 87.92 0.60 16.65 16 22 O -0.55 -23.28 17.59 -3.04 -0.05 -23.33 16 23 C 0.05 1.36 1.84 -10.09 -0.02 1.34 16 24 F -0.17 -5.26 17.06 44.97 0.77 -4.49 16 25 C 0.12 2.21 6.23 86.70 0.54 2.75 16 26 H 0.14 0.31 8.14 -2.39 -0.02 0.30 16 27 H 0.15 0.11 8.14 -2.39 -0.02 0.10 16 28 H 0.16 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.10 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.15 0.06 7.63 -2.38 -0.02 0.04 16 31 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.14 1.07 7.55 -2.39 -0.02 1.06 16 33 H 0.05 2.17 7.92 -2.39 -0.02 2.15 16 34 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.04 1.59 7.58 -2.39 -0.02 1.57 16 36 H 0.01 0.30 7.18 -2.39 -0.02 0.28 16 37 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 38 H 0.11 1.82 7.70 -2.39 -0.02 1.80 16 39 H 0.11 2.21 7.74 -2.39 -0.02 2.20 16 Total: -1.00 -86.78 345.78 0.43 -86.35 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: 1.03 Total: 0.71 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.79 Total: 2.66 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -3.94 Total: -90.95 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -4.51 Total: -67.57 kcal Atomic # 9 Polarization: -8.84 SS G_CDS: 1.53 Total: -7.30 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.88 Total: 42.46 kcal Atomic # 16 Polarization: 34.00 SS G_CDS: -0.35 Total: 33.64 kcal Total: -86.78 0.43 -86.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274905018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.375 kcal (2) G-P(sol) polarization free energy of solvation -86.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds