Wall clock time and date at job start Tue Mar 31 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31420 * 1 3 3 Si 1.86795 * 120.00086 * 2 1 4 4 H 1.48507 * 109.47002 * 266.36909 * 3 2 1 5 5 H 1.48503 * 109.47009 * 146.37072 * 3 2 1 6 6 H 1.48501 * 109.47462 * 26.36984 * 3 2 1 7 7 C 1.38896 * 119.99427 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00389 * 22.71881 * 7 2 1 9 9 N 1.37210 * 119.99424 * 202.71732 * 7 2 1 10 10 C 1.34771 * 120.00269 * 230.00345 * 9 7 2 11 11 O 1.21278 * 120.00322 * 175.11082 * 10 9 7 12 12 C 1.50701 * 120.00228 * 355.11535 * 10 9 7 13 13 H 1.09007 * 109.49467 * 309.14198 * 12 10 9 14 14 C 1.52912 * 109.49992 * 69.20244 * 12 10 9 15 15 C 1.50580 * 110.32020 * 169.82317 * 14 12 10 16 16 C 1.38092 * 119.91081 * 158.73960 * 15 14 12 17 17 C 1.38322 * 120.13912 * 179.81626 * 16 15 14 18 18 C 1.38392 * 120.47383 * 359.97438 * 17 16 15 19 19 C 1.38021 * 120.04272 * 0.09131 * 18 17 16 20 20 C 1.39402 * 119.65506 * 359.97438 * 19 18 17 21 21 C 1.48132 * 120.39323 * 179.60559 * 20 19 18 22 22 O 1.21473 * 121.44174 * 350.54113 * 21 20 19 23 23 O 1.35748 * 117.11314 * 170.52527 * 21 20 19 24 24 C 1.39435 * 120.00122 * 50.00981 * 9 7 2 25 25 C 1.39068 * 119.69478 * 4.72096 * 24 9 7 26 26 C 1.38382 * 119.09719 * 179.77258 * 25 24 9 27 27 C 1.38822 * 118.48989 * 0.49496 * 26 25 24 28 28 C 1.38139 * 119.31530 * 359.74795 * 27 26 25 29 29 N 1.31884 * 120.85294 * 0.02562 * 28 27 26 30 30 H 0.96996 * 119.99623 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.33038 * 290.08922 * 14 12 10 32 32 H 1.08997 * 109.32180 * 49.73781 * 14 12 10 33 33 H 1.08001 * 119.92820 * 359.81292 * 16 15 14 34 34 H 1.08010 * 119.76486 * 179.97438 * 17 16 15 35 35 H 1.07995 * 119.97965 * 180.10505 * 18 17 16 36 36 H 1.07999 * 120.17613 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.44943 * 359.97438 * 25 24 9 38 38 H 1.08000 * 120.74832 * 180.21945 * 26 25 24 39 39 H 1.08003 * 120.34097 * 179.72629 * 27 26 25 40 40 H 1.08006 * 119.57826 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.5725 2.0020 -1.3973 5 1 3.5053 1.4634 0.7754 6 1 1.4094 2.6736 0.6219 7 6 2.0086 -1.2029 -0.0005 8 1 1.5314 -2.1017 -0.3621 9 7 3.3008 -1.2492 0.4584 10 6 4.2598 -1.8345 -0.2861 11 8 5.4163 -1.7979 0.0770 12 6 3.8950 -2.5345 -1.5698 13 1 3.0790 -3.2330 -1.3842 14 6 3.4558 -1.5010 -2.6078 15 6 3.3259 -2.1439 -3.9633 16 6 2.5448 -1.5500 -4.9350 17 6 2.4253 -2.1344 -6.1830 18 6 3.0852 -3.3163 -6.4706 19 6 3.8684 -3.9222 -5.5091 20 6 3.9904 -3.3370 -4.2497 21 6 4.8196 -3.9777 -3.2027 22 8 5.2706 -5.0963 -3.3479 23 8 5.0540 -3.2606 -2.0742 24 6 3.6219 -0.6908 1.6950 25 6 2.6126 -0.1767 2.5017 26 6 2.9447 0.3703 3.7287 27 6 4.2812 0.3937 4.1033 28 6 5.2322 -0.1303 3.2495 29 7 4.8855 -0.6496 2.0878 30 1 -0.4849 0.8400 -0.0004 31 1 2.4940 -1.0809 -2.3140 32 1 4.1973 -0.7037 -2.6589 33 1 2.0262 -0.6274 -4.7200 34 1 1.8124 -1.6650 -6.9384 35 1 2.9876 -3.7648 -7.4482 36 1 4.3841 -4.8447 -5.7311 37 1 1.5831 -0.2069 2.1765 38 1 2.1818 0.7739 4.3780 39 1 4.5744 0.8176 5.0525 40 1 6.2733 -0.1140 3.5365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277787849.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:58 Heat of formation + Delta-G solvation = -14.390047 kcal Electronic energy + Delta-G solvation = -29267.292662 eV Core-core repulsion = 25206.660613 eV Total energy + Delta-G solvation = -4060.632049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94894 -40.12459 -38.47334 -38.24171 -36.75616 -35.37871 -33.03369 -32.61668 -31.59105 -31.20817 -30.33905 -28.86405 -25.69785 -24.89186 -24.21876 -22.98165 -22.24887 -21.74745 -20.16793 -19.47181 -18.60312 -17.80319 -17.03265 -16.49125 -16.10857 -15.86506 -15.52104 -15.24844 -15.02274 -14.91788 -14.43091 -14.37677 -14.12404 -13.88770 -13.68478 -13.41473 -13.26119 -13.06958 -12.52680 -12.44560 -12.42759 -12.17229 -11.91966 -11.67633 -11.48085 -11.31961 -11.12629 -10.88875 -10.53305 -10.34468 -10.05060 -9.79329 -9.33121 -9.23425 -9.09898 -8.89403 -8.78500 -8.28597 -7.43239 -6.91265 -4.70465 0.64334 1.26673 1.75221 1.98599 2.31694 2.90771 3.00542 3.06274 3.14004 3.33271 3.70287 3.81367 3.91380 4.29721 4.35290 4.60300 4.69865 4.78304 4.89629 5.01344 5.12358 5.23260 5.25862 5.38869 5.43634 5.46776 5.66184 5.71183 5.85840 5.87768 5.91978 5.99873 6.13752 6.23497 6.31836 6.41172 6.47155 6.62724 6.78710 6.82063 6.99938 7.14238 7.34428 7.56309 7.68717 7.84894 8.40321 8.60872 8.87857 9.29434 10.13406 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015332 B = 0.004424 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.866135 B = 6327.169133 C = 7635.749947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.095 3.905 3 Si 0.851 3.149 4 H -0.268 1.268 5 H -0.251 1.251 6 H -0.274 1.274 7 C -0.387 4.387 8 H 0.114 0.886 9 N -0.400 5.400 10 C 0.500 3.500 11 O -0.484 6.484 12 C 0.107 3.893 13 H 0.108 0.892 14 C -0.116 4.116 15 C -0.021 4.021 16 C -0.125 4.125 17 C -0.082 4.082 18 C -0.141 4.141 19 C -0.051 4.051 20 C -0.179 4.179 21 C 0.532 3.468 22 O -0.456 6.456 23 O -0.338 6.338 24 C 0.373 3.627 25 C -0.199 4.199 26 C -0.064 4.064 27 C -0.233 4.233 28 C 0.120 3.880 29 N -0.493 5.493 30 H 0.283 0.717 31 H 0.138 0.862 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.334 1.107 -6.088 6.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.118 4.118 3 Si 0.674 3.326 4 H -0.193 1.193 5 H -0.175 1.175 6 H -0.199 1.199 7 C -0.512 4.512 8 H 0.132 0.868 9 N -0.116 5.116 10 C 0.286 3.714 11 O -0.355 6.355 12 C 0.049 3.951 13 H 0.125 0.875 14 C -0.153 4.153 15 C -0.022 4.022 16 C -0.143 4.143 17 C -0.100 4.100 18 C -0.159 4.159 19 C -0.070 4.070 20 C -0.181 4.181 21 C 0.374 3.626 22 O -0.340 6.340 23 O -0.257 6.257 24 C 0.143 3.857 25 C -0.222 4.222 26 C -0.090 4.090 27 C -0.255 4.255 28 C -0.038 4.038 29 N -0.208 5.208 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.113 0.887 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.103 0.290 -6.529 6.628 hybrid contribution -0.671 1.385 0.462 1.607 sum 0.432 1.675 -6.066 6.308 Atomic orbital electron populations 1.69799 1.06227 1.29232 1.40806 1.25376 0.94948 0.98585 0.92924 0.87211 0.82082 0.83291 0.79975 1.19282 1.17459 1.19891 1.18975 0.86443 0.97485 1.48312 0.86847 1.41284 1.09073 1.49653 1.11587 1.20090 0.85527 0.81484 0.84256 1.90754 1.18304 1.56866 1.69591 1.22427 0.85404 0.94096 0.93213 0.87475 1.21238 1.06864 0.97976 0.89188 1.20127 0.93546 0.92531 0.95951 1.21090 0.99373 1.00941 0.92917 1.21389 0.97214 0.94940 0.96459 1.21133 0.98653 0.96552 0.99598 1.21214 0.95732 0.98730 0.91275 1.20155 1.03677 0.98113 0.96133 1.20965 0.77097 0.82913 0.81666 1.90766 1.47587 1.15377 1.80244 1.87028 1.36420 1.60533 1.41672 1.18983 0.88820 0.91572 0.86333 1.21915 1.01811 1.03319 0.95190 1.21295 0.96158 0.96303 0.95255 1.21809 0.94273 1.07382 1.01998 1.22477 0.99340 0.92986 0.89033 1.67695 1.17819 1.18586 1.16748 0.90600 0.84404 0.88681 0.84688 0.85376 0.85281 0.84670 0.82763 0.85585 0.85998 0.83640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.14 13.96 55.49 0.77 -18.37 16 2 C 0.09 2.11 3.54 -17.48 -0.06 2.05 16 3 Si 0.85 18.22 25.95 -169.99 -4.41 13.81 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.25 -5.83 5.48 56.52 0.31 -5.52 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.39 -8.62 6.21 -14.90 -0.09 -8.71 16 8 H 0.11 2.58 7.42 -52.49 -0.39 2.19 16 9 N -0.40 -9.16 2.17 -60.71 -0.13 -9.30 16 10 C 0.50 11.41 6.98 -10.99 -0.08 11.33 16 11 O -0.48 -12.42 14.79 -13.85 -0.20 -12.63 16 12 C 0.11 2.06 2.45 -27.93 -0.07 1.99 16 13 H 0.11 1.94 7.49 -51.93 -0.39 1.55 16 14 C -0.12 -1.96 5.04 -27.99 -0.14 -2.10 16 15 C -0.02 -0.32 5.80 -104.25 -0.60 -0.92 16 16 C -0.13 -1.56 9.71 -39.60 -0.38 -1.95 16 17 C -0.08 -0.86 10.03 -39.49 -0.40 -1.25 16 18 C -0.14 -1.49 10.04 -39.60 -0.40 -1.88 16 19 C -0.05 -0.66 9.64 -39.23 -0.38 -1.04 16 20 C -0.18 -2.79 5.83 -104.92 -0.61 -3.40 16 21 C 0.53 9.88 7.83 34.79 0.27 10.15 16 22 O -0.46 -9.16 17.40 -19.09 -0.33 -9.49 16 23 O -0.34 -6.96 9.88 -50.13 -0.50 -7.46 16 24 C 0.37 8.57 5.07 -154.63 -0.78 7.79 16 25 C -0.20 -4.16 6.75 -39.22 -0.26 -4.43 16 26 C -0.06 -1.13 10.17 -39.31 -0.40 -1.53 16 27 C -0.23 -3.83 10.11 -39.40 -0.40 -4.23 16 28 C 0.12 2.25 11.18 -17.57 -0.20 2.05 16 29 N -0.49 -11.34 7.89 -12.34 -0.10 -11.43 16 30 H 0.28 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.14 2.37 6.26 -51.93 -0.32 2.05 16 32 H 0.10 1.61 8.10 -51.93 -0.42 1.19 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.14 1.61 7.77 -52.49 -0.41 1.20 16 37 H 0.15 3.36 5.50 -52.48 -0.29 3.07 16 38 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 40 H 0.15 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 337.29 15.07 5.08 5.08 Total: -1.00 -29.61 337.29 -8.78 -38.39 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.98 Total: 7.46 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -4.98 Total: 3.94 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.55 Total: -39.10 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -1.03 Total: -29.58 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -4.41 Total: 13.81 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.61 -8.78 -38.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277787849.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.999 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds