Wall clock time and date at job start Tue Mar 31 2020 21:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48494 * 109.47183 * 269.99987 * 3 2 1 5 5 H 1.48504 * 109.47238 * 30.00333 * 3 2 1 6 6 H 1.48503 * 109.46995 * 150.00004 * 3 2 1 7 7 C 1.38810 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99858 * 160.28061 * 7 2 1 9 9 N 1.36937 * 120.00478 * 340.28639 * 7 2 1 10 10 C 1.46503 * 119.99401 * 320.53086 * 9 7 2 11 11 C 1.52997 * 109.47343 * 270.00230 * 10 9 7 12 12 N 1.46500 * 109.47045 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00105 * 180.02562 * 12 11 10 14 14 O 1.21777 * 119.99833 * 359.97438 * 13 12 11 15 15 C 1.41711 * 120.00104 * 179.97438 * 13 12 11 16 16 S 1.75657 * 125.10498 * 0.02569 * 15 13 12 17 17 C 1.75550 * 91.21475 * 179.97438 * 16 15 13 18 18 C 1.34200 * 110.67869 * 359.97325 * 17 16 15 19 19 C 1.37149 * 125.10158 * 179.71385 * 15 13 12 20 20 O 1.37658 * 124.48152 * 0.30423 * 19 15 13 21 21 C 1.43380 * 114.49968 * 163.24970 * 20 19 15 22 22 C 1.53219 * 109.13220 * 46.53154 * 21 20 19 23 23 O 1.38243 * 124.14402 * 180.21867 * 18 17 16 24 24 C 1.46496 * 120.00458 * 140.53215 * 9 7 2 25 25 C 1.52998 * 117.49890 * 3.29268 * 24 9 7 26 26 C 1.52998 * 117.50003 * 294.66376 * 24 9 7 27 27 H 0.96996 * 119.99348 * 355.02417 * 1 2 3 28 28 H 1.09005 * 109.47403 * 30.00600 * 10 9 7 29 29 H 1.09009 * 109.46909 * 149.99882 * 10 9 7 30 30 H 1.09000 * 109.46847 * 299.99846 * 11 10 9 31 31 H 1.08992 * 109.47390 * 59.99992 * 11 10 9 32 32 H 0.97003 * 119.99992 * 359.97438 * 12 11 10 33 33 H 1.08003 * 124.66086 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.52247 * 166.42456 * 21 20 19 35 35 H 1.09002 * 109.52571 * 286.55961 * 21 20 19 36 36 H 1.08998 * 109.52160 * 57.62639 * 22 21 20 37 37 H 1.09003 * 109.52448 * 177.75419 * 22 21 20 38 38 H 1.09002 * 115.54756 * 148.99841 * 24 9 7 39 39 H 1.08994 * 117.49716 * 359.97438 * 25 24 9 40 40 H 1.08998 * 117.50108 * 145.02280 * 25 24 9 41 41 H 1.08999 * 117.50054 * 214.97813 * 26 24 9 42 42 H 1.09002 * 117.49512 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0428 -1.2297 -0.3151 9 7 1.3858 -2.3532 0.4011 10 6 0.4640 -2.3283 1.5395 11 6 1.2392 -2.6032 2.8296 12 7 0.3173 -2.5789 3.9678 13 6 0.7803 -2.7965 5.2148 14 8 1.9648 -3.0138 5.3952 15 6 -0.1114 -2.7725 6.3159 16 16 -1.8392 -2.4739 6.2103 17 6 -2.0123 -2.6416 7.9492 18 6 -0.8266 -2.9035 8.5204 19 6 0.2441 -2.9848 7.6234 20 8 1.5266 -3.2465 8.0497 21 6 1.7348 -3.0625 9.4563 22 6 0.5929 -3.7350 10.2252 23 8 -0.6438 -3.0917 9.8777 24 6 1.6395 -3.6093 -0.3087 25 6 2.6700 -3.5862 -1.4394 26 6 1.1795 -3.7033 -1.7649 27 1 -0.4849 0.8369 0.0729 28 1 -0.0098 -1.3486 1.6021 29 1 -0.3005 -3.0936 1.4048 30 1 1.7129 -3.5829 2.7670 31 1 2.0036 -1.8380 2.9642 32 1 -0.6262 -2.4054 3.8242 33 1 -2.9450 -2.5471 8.4855 34 1 2.6841 -3.5131 9.7460 35 1 1.7522 -1.9970 9.6857 36 1 0.5492 -4.7918 9.9619 37 1 0.7657 -3.6334 11.2967 38 1 1.5776 -4.5128 0.2979 39 1 3.1588 -2.6363 -1.6554 40 1 3.2864 -4.4746 -1.5768 41 1 0.8155 -4.6687 -2.1164 42 1 0.6877 -2.8306 -2.1946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:00 Heat of formation + Delta-G solvation = -14.542954 kcal Electronic energy + Delta-G solvation = -26647.405550 eV Core-core repulsion = 22722.210822 eV Total energy + Delta-G solvation = -3925.194728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24234 -39.27472 -37.23464 -37.04964 -35.83062 -34.66074 -33.18726 -31.03892 -30.13157 -29.90899 -27.59836 -25.09217 -24.09649 -23.94242 -21.86059 -21.28866 -20.85676 -19.79477 -19.47061 -19.05823 -17.46263 -17.12300 -16.55105 -16.18077 -15.57075 -15.52710 -15.20905 -15.03096 -14.84436 -14.70705 -14.53465 -14.26133 -13.88306 -13.41821 -13.35362 -13.02723 -12.65525 -12.57139 -11.92501 -11.57168 -11.54214 -11.33866 -11.22985 -11.04325 -11.00299 -10.72385 -10.70567 -10.33491 -10.13830 -9.86320 -9.68620 -9.60881 -9.26969 -8.84125 -8.53230 -8.43670 -8.19107 -6.58573 -5.83887 -3.50356 0.25713 1.15424 1.39217 1.98553 2.98887 3.19863 3.32764 3.41154 3.45665 3.47051 3.52585 3.89676 4.27701 4.43832 4.52186 4.58047 4.94920 4.95730 5.07337 5.11427 5.21533 5.25983 5.31064 5.35051 5.72269 5.92699 6.06152 6.11859 6.22486 6.29854 6.37592 6.52154 6.53301 6.63523 6.82667 6.84686 6.99294 7.08722 7.24869 7.48859 7.77075 7.86921 8.45060 8.54179 9.09761 9.70450 10.28462 11.11651 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.002781 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.619096 B =10067.425174 C =10370.142659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.016 3.984 3 Si 0.895 3.105 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.261 4.261 8 H 0.065 0.935 9 N -0.547 5.547 10 C 0.141 3.859 11 C 0.101 3.899 12 N -0.718 5.718 13 C 0.582 3.418 14 O -0.523 6.523 15 C -0.269 4.269 16 S 0.218 5.782 17 C -0.216 4.216 18 C 0.033 3.967 19 C 0.120 3.880 20 O -0.259 6.259 21 C 0.012 3.988 22 C 0.018 3.982 23 O -0.293 6.293 24 C 0.119 3.881 25 C -0.194 4.194 26 C -0.219 4.219 27 H 0.255 0.745 28 H 0.099 0.901 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.392 0.608 33 H 0.181 0.819 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.004 -7.082 18.856 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.185 4.185 3 Si 0.724 3.276 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.391 4.391 8 H 0.083 0.917 9 N -0.264 5.264 10 C 0.014 3.986 11 C -0.024 4.024 12 N -0.369 5.369 13 C 0.368 3.632 14 O -0.401 6.401 15 C -0.389 4.389 16 S 0.481 5.519 17 C -0.353 4.353 18 C -0.023 4.023 19 C 0.059 3.941 20 O -0.171 6.171 21 C -0.065 4.065 22 C -0.058 4.058 23 O -0.208 6.208 24 C 0.010 3.990 25 C -0.233 4.233 26 C -0.260 4.260 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.226 0.774 33 H 0.198 0.802 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.216 -6.779 17.743 19.697 hybrid contribution 0.991 0.655 1.296 1.757 sum -4.225 -6.125 19.038 20.440 Atomic orbital electron populations 1.70052 1.05513 1.26271 1.50596 1.25236 0.95047 0.98860 0.99313 0.86433 0.79748 0.83521 0.77895 1.21112 1.21387 1.20112 1.19031 0.93419 0.84968 1.41644 0.91721 1.43160 1.51033 1.03401 1.28774 1.21013 0.91036 1.03013 0.83536 1.22360 0.93392 1.01258 0.85423 1.45998 1.12205 1.72064 1.06666 1.15569 0.87289 0.78359 0.81965 1.90871 1.15656 1.48817 1.84775 1.22765 0.99547 1.20435 0.96184 1.84228 0.98651 1.68806 1.00171 1.24950 1.00470 1.11469 0.98444 1.18228 0.92497 1.07081 0.84523 1.18882 0.85055 0.98682 0.91473 1.87219 1.23077 1.83109 1.23736 1.23724 1.00311 1.02292 0.80138 1.23675 0.83047 0.97321 1.01776 1.87115 1.39322 1.77085 1.17320 1.21244 1.00864 0.90340 0.86513 1.23021 0.92183 1.01889 1.06164 1.23339 0.96870 1.00962 1.04823 0.93494 0.88319 0.94869 0.92855 0.91330 0.77396 0.80178 0.85685 0.90285 0.90286 0.85864 0.89532 0.88425 0.90754 0.91253 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 11.50 55.49 0.64 -23.60 16 2 C 0.02 0.44 4.98 -17.43 -0.09 0.35 16 3 Si 0.90 21.23 29.60 -169.99 -5.03 16.20 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.90 8.47 -15.06 -0.13 -7.03 16 8 H 0.07 1.73 6.75 -52.48 -0.35 1.38 16 9 N -0.55 -13.21 2.75 -165.66 -0.46 -13.67 16 10 C 0.14 3.12 5.45 -4.04 -0.02 3.09 16 11 C 0.10 2.07 6.00 -4.04 -0.02 2.04 16 12 N -0.72 -12.70 5.54 -63.20 -0.35 -13.05 16 13 C 0.58 10.80 7.59 -14.93 -0.11 10.69 16 14 O -0.52 -11.62 15.86 -11.90 -0.19 -11.81 16 15 C -0.27 -4.10 6.25 -38.65 -0.24 -4.34 16 16 S 0.22 2.38 22.17 -107.50 -2.38 0.00 16 17 C -0.22 -2.18 11.17 29.31 0.33 -1.85 16 18 C 0.03 0.40 6.54 -40.38 -0.26 0.14 16 19 C 0.12 1.75 6.58 -39.35 -0.26 1.49 16 20 O -0.26 -3.82 9.60 -49.16 -0.47 -4.30 16 21 C 0.01 0.11 7.13 37.27 0.27 0.37 16 22 C 0.02 0.14 7.15 37.27 0.27 0.40 16 23 O -0.29 -3.11 10.78 -35.39 -0.38 -3.49 16 24 C 0.12 2.54 6.56 -67.93 -0.45 2.10 16 25 C -0.19 -3.86 9.80 -26.73 -0.26 -4.12 16 26 C -0.22 -4.46 10.36 -26.73 -0.28 -4.74 16 27 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 28 H 0.10 2.42 5.59 -51.93 -0.29 2.13 16 29 H 0.03 0.68 8.07 -51.92 -0.42 0.26 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 32 H 0.39 5.98 7.41 -40.82 -0.30 5.68 16 33 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 34 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 39 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -32.83 365.22 -9.87 -42.70 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.49 Total: 6.92 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.26 Total: -1.41 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.17 Total: -50.32 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -1.04 Total: -19.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.38 Total: 0.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.83 -9.87 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.155 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds