Wall clock time and date at job start Tue Mar 31 2020 21:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00120 * 2 1 4 4 H 1.48494 * 109.47183 * 269.99987 * 3 2 1 5 5 H 1.48504 * 109.47238 * 30.00333 * 3 2 1 6 6 H 1.48503 * 109.46995 * 150.00004 * 3 2 1 7 7 C 1.38810 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99858 * 160.28061 * 7 2 1 9 9 N 1.36937 * 120.00478 * 340.28639 * 7 2 1 10 10 C 1.46503 * 119.99401 * 320.53086 * 9 7 2 11 11 C 1.52997 * 109.47343 * 270.00230 * 10 9 7 12 12 N 1.46500 * 109.47045 * 180.02562 * 11 10 9 13 13 C 1.34782 * 120.00105 * 180.02562 * 12 11 10 14 14 O 1.21777 * 119.99833 * 359.97438 * 13 12 11 15 15 C 1.41711 * 120.00104 * 179.97438 * 13 12 11 16 16 S 1.75657 * 125.10498 * 0.02569 * 15 13 12 17 17 C 1.75550 * 91.21475 * 179.97438 * 16 15 13 18 18 C 1.34200 * 110.67869 * 359.97325 * 17 16 15 19 19 C 1.37149 * 125.10158 * 179.71385 * 15 13 12 20 20 O 1.37658 * 124.48152 * 0.30423 * 19 15 13 21 21 C 1.43380 * 114.49968 * 163.24970 * 20 19 15 22 22 C 1.53219 * 109.13220 * 46.53154 * 21 20 19 23 23 O 1.38243 * 124.14402 * 180.21867 * 18 17 16 24 24 C 1.46496 * 120.00458 * 140.53215 * 9 7 2 25 25 C 1.52998 * 117.49890 * 3.29268 * 24 9 7 26 26 C 1.52998 * 117.50003 * 294.66376 * 24 9 7 27 27 H 0.96996 * 119.99348 * 355.02417 * 1 2 3 28 28 H 1.09005 * 109.47403 * 30.00600 * 10 9 7 29 29 H 1.09009 * 109.46909 * 149.99882 * 10 9 7 30 30 H 1.09000 * 109.46847 * 299.99846 * 11 10 9 31 31 H 1.08992 * 109.47390 * 59.99992 * 11 10 9 32 32 H 0.97003 * 119.99992 * 359.97438 * 12 11 10 33 33 H 1.08003 * 124.66086 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.52247 * 166.42456 * 21 20 19 35 35 H 1.09002 * 109.52571 * 286.55961 * 21 20 19 36 36 H 1.08998 * 109.52160 * 57.62639 * 22 21 20 37 37 H 1.09003 * 109.52448 * 177.75419 * 22 21 20 38 38 H 1.09002 * 115.54756 * 148.99841 * 24 9 7 39 39 H 1.08994 * 117.49716 * 359.97438 * 25 24 9 40 40 H 1.08998 * 117.50108 * 145.02280 * 25 24 9 41 41 H 1.08999 * 117.50054 * 214.97813 * 26 24 9 42 42 H 1.09002 * 117.49512 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0428 -1.2297 -0.3151 9 7 1.3858 -2.3532 0.4011 10 6 0.4640 -2.3283 1.5395 11 6 1.2392 -2.6032 2.8296 12 7 0.3173 -2.5789 3.9678 13 6 0.7803 -2.7965 5.2148 14 8 1.9648 -3.0138 5.3952 15 6 -0.1114 -2.7725 6.3159 16 16 -1.8392 -2.4739 6.2103 17 6 -2.0123 -2.6416 7.9492 18 6 -0.8266 -2.9035 8.5204 19 6 0.2441 -2.9848 7.6234 20 8 1.5266 -3.2465 8.0497 21 6 1.7348 -3.0625 9.4563 22 6 0.5929 -3.7350 10.2252 23 8 -0.6438 -3.0917 9.8777 24 6 1.6395 -3.6093 -0.3087 25 6 2.6700 -3.5862 -1.4394 26 6 1.1795 -3.7033 -1.7649 27 1 -0.4849 0.8369 0.0729 28 1 -0.0098 -1.3486 1.6021 29 1 -0.3005 -3.0936 1.4048 30 1 1.7129 -3.5829 2.7670 31 1 2.0036 -1.8380 2.9642 32 1 -0.6262 -2.4054 3.8242 33 1 -2.9450 -2.5471 8.4855 34 1 2.6841 -3.5131 9.7460 35 1 1.7522 -1.9970 9.6857 36 1 0.5492 -4.7918 9.9619 37 1 0.7657 -3.6334 11.2967 38 1 1.5776 -4.5128 0.2979 39 1 3.1588 -2.6363 -1.6554 40 1 3.2864 -4.4746 -1.5768 41 1 0.8155 -4.6687 -2.1164 42 1 0.6877 -2.8306 -2.1946 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:00 Heat of formation + Delta-G solvation = -36.314316 kcal Electronic energy + Delta-G solvation = -26648.349627 eV Core-core repulsion = 22722.210822 eV Total energy + Delta-G solvation = -3926.138805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.13278 -40.68117 -38.82979 -38.08165 -36.78378 -36.24672 -34.99087 -32.83459 -31.20323 -30.79164 -29.19788 -26.62235 -25.54473 -24.73119 -23.45402 -22.88704 -22.19062 -21.57162 -20.35254 -20.21813 -18.47134 -18.32255 -17.87481 -17.50550 -17.22652 -16.89770 -16.49399 -16.32401 -16.09257 -15.83435 -15.73308 -15.42066 -15.37803 -14.72747 -14.47968 -14.47087 -14.12333 -13.77642 -13.66192 -13.28466 -12.93657 -12.62356 -12.53873 -12.39983 -12.15982 -12.11594 -12.04555 -11.93809 -11.81085 -11.68604 -11.35671 -11.20345 -10.90445 -10.51132 -10.19293 -9.66327 -9.06904 -8.53493 -7.83428 -5.54158 -0.75373 0.24311 0.49743 1.03879 1.41847 1.45878 1.54793 2.04828 2.09388 2.22778 2.45227 2.49708 3.05874 3.15196 3.40523 3.51303 3.59362 3.90983 3.94714 4.02441 4.20626 4.30450 4.34675 4.38761 4.41748 4.50723 4.53356 4.58711 4.61505 4.77160 4.86311 4.95575 5.04242 5.18713 5.29371 5.42099 5.56717 5.58623 5.64047 5.72044 5.96358 6.42316 6.48475 7.10029 7.14887 7.78344 8.30966 9.07510 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.002781 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.619096 B =10067.425174 C =10370.142659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.025 4.025 3 Si 0.947 3.053 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.267 4.267 8 H 0.055 0.945 9 N -0.565 5.565 10 C 0.150 3.850 11 C 0.123 3.877 12 N -0.712 5.712 13 C 0.583 3.417 14 O -0.572 6.572 15 C -0.323 4.323 16 S 0.265 5.735 17 C -0.188 4.188 18 C 0.014 3.986 19 C 0.122 3.878 20 O -0.296 6.296 21 C 0.001 3.999 22 C 0.018 3.982 23 O -0.298 6.298 24 C 0.098 3.902 25 C -0.184 4.184 26 C -0.210 4.210 27 H 0.254 0.746 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.405 0.595 33 H 0.217 0.783 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.163 0.837 38 H 0.110 0.890 39 H 0.074 0.926 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.254 -8.016 20.517 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.397 4.397 8 H 0.073 0.927 9 N -0.282 5.282 10 C 0.023 3.977 11 C -0.003 4.003 12 N -0.364 5.364 13 C 0.373 3.627 14 O -0.454 6.454 15 C -0.443 4.443 16 S 0.528 5.472 17 C -0.325 4.325 18 C -0.042 4.042 19 C 0.059 3.941 20 O -0.209 6.209 21 C -0.074 4.074 22 C -0.057 4.057 23 O -0.214 6.214 24 C -0.010 4.010 25 C -0.222 4.222 26 C -0.250 4.250 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.241 0.759 33 H 0.234 0.766 34 H 0.168 0.832 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.181 0.819 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.128 0.872 41 H 0.121 0.879 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.488 -7.722 19.399 21.864 hybrid contribution 1.370 0.883 0.873 1.849 sum -5.118 -6.839 20.272 21.998 Atomic orbital electron populations 1.70135 1.06323 1.26602 1.51796 1.25787 0.95724 1.01106 0.99740 0.85622 0.78528 0.80633 0.77700 1.20861 1.21266 1.20370 1.19128 0.93221 0.86251 1.41102 0.92723 1.43351 1.51217 1.03854 1.29804 1.20867 0.91069 1.02132 0.83645 1.21872 0.92825 0.99769 0.85864 1.45803 1.12430 1.72132 1.06001 1.15964 0.87217 0.76976 0.82577 1.90824 1.17870 1.51187 1.85515 1.22571 1.01906 1.24387 0.95417 1.83995 0.94835 1.67638 1.00725 1.25468 1.01226 1.07765 0.98068 1.18239 0.92225 1.08656 0.85060 1.19257 0.85732 0.97256 0.91822 1.87158 1.23780 1.82968 1.27003 1.24108 1.02381 1.03064 0.77835 1.23936 0.81220 0.96933 1.03610 1.87104 1.40650 1.77506 1.16144 1.21543 1.02311 0.89948 0.87197 1.23032 0.92186 1.02278 1.04675 1.23236 0.97062 1.01153 1.03567 0.93690 0.90653 0.93329 0.93159 0.94661 0.75904 0.76597 0.83229 0.90096 0.90015 0.81940 0.87218 0.90744 0.87242 0.87886 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.69 11.50 21.65 0.25 -50.44 16 2 C -0.03 -1.36 4.98 84.86 0.42 -0.94 16 3 Si 0.95 44.52 29.60 68.60 2.03 46.55 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.27 -14.43 8.47 84.03 0.71 -13.72 16 8 H 0.06 3.01 6.75 -2.91 -0.02 2.99 16 9 N -0.56 -27.67 2.75 -678.02 -1.86 -29.53 16 10 C 0.15 6.73 5.45 86.38 0.47 7.20 16 11 C 0.12 5.21 6.00 86.38 0.52 5.73 16 12 N -0.71 -25.84 5.54 -472.04 -2.62 -28.46 16 13 C 0.58 22.43 7.59 85.10 0.65 23.08 16 14 O -0.57 -26.73 15.86 11.68 0.19 -26.54 16 15 C -0.32 -9.90 6.25 22.87 0.14 -9.76 16 16 S 0.26 5.31 22.17 -56.49 -1.25 4.06 16 17 C -0.19 -3.22 11.17 66.90 0.75 -2.48 16 18 C 0.01 0.31 6.54 21.75 0.14 0.46 16 19 C 0.12 3.53 6.58 22.42 0.15 3.68 16 20 O -0.30 -8.89 9.60 -90.59 -0.87 -9.76 16 21 C 0.00 0.02 7.13 72.06 0.51 0.53 16 22 C 0.02 0.23 7.15 72.06 0.52 0.75 16 23 O -0.30 -5.60 10.78 -113.01 -1.22 -6.82 16 24 C 0.10 4.09 6.56 44.99 0.30 4.39 16 25 C -0.18 -7.08 9.80 30.60 0.30 -6.78 16 26 C -0.21 -8.28 10.36 30.60 0.32 -7.97 16 27 H 0.25 13.71 8.32 -92.71 -0.77 12.94 16 28 H 0.08 3.80 5.59 -2.38 -0.01 3.79 16 29 H 0.05 2.00 8.07 -2.38 -0.02 1.98 16 30 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.41 12.44 7.41 -92.71 -0.69 11.75 16 33 H 0.22 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.07 3.23 6.46 -2.39 -0.02 3.21 16 40 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 41 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -74.30 365.22 0.91 -73.39 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.38 Total: 23.38 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.89 Total: 4.17 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -4.23 Total: -108.43 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.90 Total: -43.12 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.25 Total: 4.06 kcal Total: -74.30 0.91 -73.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.073 kcal (2) G-P(sol) polarization free energy of solvation -74.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds