Wall clock time and date at job start Tue Mar 31 2020 21:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48491 * 109.46962 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47068 * 119.99976 * 3 2 1 6 6 H 1.48500 * 109.46856 * 239.99604 * 3 2 1 7 7 C 1.38813 * 120.00607 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00497 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99535 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99834 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47023 * 172.52491 * 10 9 7 12 12 H 1.08994 * 109.87386 * 47.39034 * 11 10 9 13 13 C 1.54325 * 109.88152 * 168.40271 * 11 10 9 14 14 C 1.55159 * 102.94308 * 141.61146 * 13 11 10 15 15 C 1.54917 * 101.57840 * 324.50065 * 14 13 11 16 16 N 1.47017 * 109.88213 * 286.21073 * 11 10 9 17 17 C 1.34774 * 125.64889 * 61.62223 * 16 11 10 18 18 O 1.21786 * 119.99971 * 6.04967 * 17 16 11 19 19 C 1.41712 * 120.00479 * 186.04599 * 17 16 11 20 20 S 1.75664 * 125.09923 * 7.06478 * 19 17 16 21 21 C 1.75556 * 91.21285 * 179.97438 * 20 19 17 22 22 C 1.34210 * 110.67805 * 359.97438 * 21 20 19 23 23 C 1.37155 * 125.10613 * 186.75408 * 19 17 16 24 24 O 1.37657 * 124.48172 * 0.87158 * 23 19 17 25 25 C 1.43374 * 114.57952 * 162.88721 * 24 23 19 26 26 C 1.53212 * 109.14121 * 46.25548 * 25 24 23 27 27 O 1.38244 * 124.14239 * 180.13649 * 22 21 20 28 28 H 0.97005 * 119.99756 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99812 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47363 * 292.52171 * 10 9 7 31 31 H 1.08999 * 109.47156 * 52.52466 * 10 9 7 32 32 H 1.09002 * 110.72398 * 259.97246 * 13 11 10 33 33 H 1.09006 * 110.72023 * 23.07358 * 13 11 10 34 34 H 1.08997 * 111.00945 * 82.56782 * 14 13 11 35 35 H 1.08998 * 111.00908 * 206.42991 * 14 13 11 36 36 H 1.08994 * 110.36753 * 155.85008 * 15 14 13 37 37 H 1.09004 * 110.36209 * 278.05959 * 15 14 13 38 38 H 1.07993 * 124.66242 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.52371 * 286.35711 * 25 24 23 40 40 H 1.08999 * 109.52557 * 166.15581 * 25 24 23 41 41 H 1.09000 * 109.52667 * 177.84024 * 26 25 24 42 42 H 1.09004 * 109.57597 * 57.68241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0746 -4.8135 0.1882 12 1 0.2256 -4.6908 -0.4843 13 6 1.7814 -6.1551 -0.0983 14 6 1.1807 -7.1007 0.9752 15 6 1.0159 -6.1396 2.1789 16 7 0.6103 -4.8539 1.5826 17 6 -0.0727 -3.8770 2.2116 18 8 -0.4507 -2.9006 1.5895 19 6 -0.3512 -3.9860 3.5968 20 16 0.2751 -5.2383 4.6575 21 6 -0.5723 -4.5499 6.0322 22 6 -1.2613 -3.4579 5.6659 23 6 -1.1452 -3.1260 4.3118 24 8 -1.7994 -2.0405 3.7746 25 6 -2.8565 -1.5178 4.5900 26 6 -2.3621 -1.3939 6.0349 27 8 -2.0260 -2.6969 6.5302 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 2.5808 -3.7745 -0.9488 31 1 2.7813 -3.6587 0.8161 32 1 1.5436 -6.5099 -1.1012 33 1 2.8596 -6.0580 0.0293 34 1 0.2160 -7.4935 0.6541 35 1 1.8708 -7.9101 1.2132 36 1 0.2421 -6.5058 2.8536 37 1 1.9615 -6.0316 2.7103 38 1 -0.5433 -4.9500 7.0349 39 1 -3.7119 -2.1925 4.5542 40 1 -3.1503 -0.5355 4.2200 41 1 -3.1485 -0.9611 6.6532 42 1 -1.4806 -0.7535 6.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319122470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:47 Heat of formation + Delta-G solvation = -25.993021 kcal Electronic energy + Delta-G solvation = -28445.263375 eV Core-core repulsion = 24519.572135 eV Total energy + Delta-G solvation = -3925.691240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.98789 -39.84231 -37.34327 -36.77286 -35.45491 -34.42526 -31.80138 -31.18789 -29.81777 -29.39277 -28.43460 -25.21383 -24.44555 -23.74454 -22.80709 -21.79484 -21.23979 -19.62571 -19.20639 -18.24540 -17.20375 -17.09377 -16.64305 -16.45399 -15.97694 -15.49038 -15.06575 -14.78963 -14.40202 -14.25455 -13.94573 -13.86089 -13.42575 -13.38211 -13.35297 -13.03711 -12.87055 -12.65794 -12.40195 -11.97218 -11.67240 -11.52277 -11.10732 -11.03953 -10.90443 -10.76653 -10.65198 -10.58602 -10.50956 -10.29645 -9.79916 -9.22106 -8.82859 -8.60505 -8.50119 -8.18950 -7.86100 -6.56993 -5.73072 -2.68401 0.50197 1.38291 1.61346 2.24957 3.21048 3.30022 3.50370 3.64550 3.70383 3.74966 3.87140 4.09706 4.48483 4.54702 4.65875 4.81084 4.87002 4.90907 4.94978 5.21342 5.26083 5.32071 5.34986 5.40018 5.46514 5.49346 5.52971 5.71990 5.83103 5.91931 5.95832 5.98836 6.07989 6.22144 6.45004 6.53046 6.64182 6.82705 6.99403 7.14582 7.91062 8.10365 8.73502 9.20462 9.74748 10.56906 10.75331 11.78367 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.005941 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.755928 B = 4711.593622 C = 7262.467245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.043 4.043 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.300 1.300 6 H -0.298 1.298 7 C -0.333 4.333 8 H 0.053 0.947 9 N -0.734 5.734 10 C 0.151 3.849 11 C 0.132 3.868 12 H 0.073 0.927 13 C -0.124 4.124 14 C -0.125 4.125 15 C 0.085 3.915 16 N -0.617 5.617 17 C 0.593 3.407 18 O -0.456 6.456 19 C -0.260 4.260 20 S 0.206 5.794 21 C -0.237 4.237 22 C 0.037 3.963 23 C 0.125 3.875 24 O -0.247 6.247 25 C 0.013 3.987 26 C 0.017 3.983 27 O -0.296 6.296 28 H 0.267 0.733 29 H 0.385 0.615 30 H 0.017 0.983 31 H 0.018 0.982 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.175 0.825 39 H 0.076 0.924 40 H 0.127 0.873 41 H 0.123 0.877 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.962 -15.968 12.700 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.242 4.242 3 Si 0.907 3.093 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.226 1.226 7 C -0.464 4.464 8 H 0.071 0.929 9 N -0.387 5.387 10 C 0.022 3.978 11 C 0.029 3.971 12 H 0.091 0.909 13 C -0.162 4.162 14 C -0.163 4.163 15 C -0.040 4.040 16 N -0.355 5.355 17 C 0.381 3.619 18 O -0.328 6.328 19 C -0.380 4.380 20 S 0.469 5.531 21 C -0.373 4.373 22 C -0.020 4.020 23 C 0.064 3.936 24 O -0.159 6.159 25 C -0.063 4.063 26 C -0.059 4.059 27 O -0.211 6.211 28 H 0.079 0.921 29 H 0.227 0.773 30 H 0.035 0.965 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.193 0.807 39 H 0.094 0.906 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.314 -14.822 12.225 19.352 hybrid contribution -0.894 -0.253 0.559 1.085 sum -3.209 -15.075 12.784 20.025 Atomic orbital electron populations 1.70664 1.05847 1.29641 1.52415 1.25537 0.97256 1.00282 1.01104 0.83337 0.74149 0.76298 0.75470 1.21263 1.22821 1.22635 1.19921 0.91326 0.86410 1.48790 0.92922 1.42849 1.06343 0.99766 1.89772 1.20933 0.93161 0.86194 0.97500 1.21868 0.97417 0.95615 0.82212 0.90863 1.22640 1.00655 0.93578 0.99353 1.22703 1.01830 0.97064 0.94683 1.22407 1.00356 0.84714 0.96534 1.48279 1.57225 1.16721 1.13298 1.15134 0.79518 0.82641 0.84635 1.90898 1.48489 1.28446 1.64995 1.22547 1.13258 1.03392 0.98804 1.84179 1.48688 1.25571 0.94674 1.25238 1.04831 1.01673 1.05562 1.18283 0.99557 0.96108 0.88015 1.18934 0.95552 0.89546 0.89546 1.87359 1.45741 1.40549 1.42285 1.23714 0.89608 1.02269 0.90743 1.23650 1.02648 0.83533 0.96044 1.87016 1.67346 1.26790 1.39994 0.92070 0.77346 0.96526 0.96371 0.90018 0.90235 0.90532 0.89831 0.90353 0.91150 0.80745 0.90596 0.85473 0.85920 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -32.17 13.70 55.49 0.76 -31.41 16 2 C -0.04 -1.37 5.50 -17.43 -0.10 -1.47 16 3 Si 1.07 28.47 29.92 -169.99 -5.09 23.39 16 4 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 6 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 7 C -0.33 -10.53 9.99 -15.06 -0.15 -10.68 16 8 H 0.05 1.64 7.83 -52.49 -0.41 1.22 16 9 N -0.73 -21.14 4.41 -59.91 -0.26 -21.40 16 10 C 0.15 3.44 5.62 -4.04 -0.02 3.41 16 11 C 0.13 2.37 3.05 -66.95 -0.20 2.16 16 12 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 13 C -0.12 -1.51 6.46 -24.89 -0.16 -1.67 16 14 C -0.12 -1.21 7.09 -24.58 -0.17 -1.39 16 15 C 0.08 1.04 5.19 -2.53 -0.01 1.03 16 16 N -0.62 -10.91 3.06 -166.36 -0.51 -11.41 16 17 C 0.59 12.64 7.34 -14.93 -0.11 12.53 16 18 O -0.46 -12.12 12.02 -11.61 -0.14 -12.26 16 19 C -0.26 -4.73 6.15 -38.65 -0.24 -4.96 16 20 S 0.21 2.54 18.60 -107.50 -2.00 0.54 16 21 C -0.24 -2.93 11.17 29.31 0.33 -2.60 16 22 C 0.04 0.55 6.55 -40.38 -0.26 0.29 16 23 C 0.13 2.29 6.57 -39.35 -0.26 2.03 16 24 O -0.25 -4.92 9.62 -48.98 -0.47 -5.40 16 25 C 0.01 0.18 7.14 37.27 0.27 0.44 16 26 C 0.02 0.20 7.14 37.27 0.27 0.47 16 27 O -0.30 -4.06 10.77 -35.41 -0.38 -4.45 16 28 H 0.27 9.31 6.47 -40.82 -0.26 9.05 16 29 H 0.39 11.66 3.72 -40.82 -0.15 11.51 16 30 H 0.02 0.38 8.11 -51.93 -0.42 -0.04 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.85 5.76 -36.85 -0.21 0.64 16 37 H 0.07 0.81 7.84 -51.93 -0.41 0.40 16 38 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.13 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 347.26 15.07 5.23 5.23 Total: -1.00 -41.11 347.26 -8.99 -50.10 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.30 Total: 7.48 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -0.83 Total: -0.41 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.01 Total: -64.23 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.99 Total: -22.10 kcal Atomic # 14 Polarization: 28.47 SS G_CDS: -5.09 Total: 23.39 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.00 Total: 0.54 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -41.11 -8.99 -50.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319122470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.106 kcal (2) G-P(sol) polarization free energy of solvation -41.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds