Wall clock time and date at job start Tue Mar 31 2020 21:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48491 * 109.46962 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47068 * 119.99976 * 3 2 1 6 6 H 1.48500 * 109.46856 * 239.99604 * 3 2 1 7 7 C 1.38813 * 120.00607 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00497 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99535 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99834 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47023 * 172.52491 * 10 9 7 12 12 H 1.08994 * 109.87386 * 47.39034 * 11 10 9 13 13 C 1.54325 * 109.88152 * 168.40271 * 11 10 9 14 14 C 1.55159 * 102.94308 * 141.61146 * 13 11 10 15 15 C 1.54917 * 101.57840 * 324.50065 * 14 13 11 16 16 N 1.47017 * 109.88213 * 286.21073 * 11 10 9 17 17 C 1.34774 * 125.64889 * 61.62223 * 16 11 10 18 18 O 1.21786 * 119.99971 * 6.04967 * 17 16 11 19 19 C 1.41712 * 120.00479 * 186.04599 * 17 16 11 20 20 S 1.75664 * 125.09923 * 7.06478 * 19 17 16 21 21 C 1.75556 * 91.21285 * 179.97438 * 20 19 17 22 22 C 1.34210 * 110.67805 * 359.97438 * 21 20 19 23 23 C 1.37155 * 125.10613 * 186.75408 * 19 17 16 24 24 O 1.37657 * 124.48172 * 0.87158 * 23 19 17 25 25 C 1.43374 * 114.57952 * 162.88721 * 24 23 19 26 26 C 1.53212 * 109.14121 * 46.25548 * 25 24 23 27 27 O 1.38244 * 124.14239 * 180.13649 * 22 21 20 28 28 H 0.97005 * 119.99756 * 179.97438 * 1 2 3 29 29 H 0.96997 * 119.99812 * 0.02562 * 9 7 2 30 30 H 1.09007 * 109.47363 * 292.52171 * 10 9 7 31 31 H 1.08999 * 109.47156 * 52.52466 * 10 9 7 32 32 H 1.09002 * 110.72398 * 259.97246 * 13 11 10 33 33 H 1.09006 * 110.72023 * 23.07358 * 13 11 10 34 34 H 1.08997 * 111.00945 * 82.56782 * 14 13 11 35 35 H 1.08998 * 111.00908 * 206.42991 * 14 13 11 36 36 H 1.08994 * 110.36753 * 155.85008 * 15 14 13 37 37 H 1.09004 * 110.36209 * 278.05959 * 15 14 13 38 38 H 1.07993 * 124.66242 * 179.97438 * 21 20 19 39 39 H 1.09000 * 109.52371 * 286.35711 * 25 24 23 40 40 H 1.08999 * 109.52557 * 166.15581 * 25 24 23 41 41 H 1.09000 * 109.52667 * 177.84024 * 26 25 24 42 42 H 1.09004 * 109.57597 * 57.68241 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0746 -4.8135 0.1882 12 1 0.2256 -4.6908 -0.4843 13 6 1.7814 -6.1551 -0.0983 14 6 1.1807 -7.1007 0.9752 15 6 1.0159 -6.1396 2.1789 16 7 0.6103 -4.8539 1.5826 17 6 -0.0727 -3.8770 2.2116 18 8 -0.4507 -2.9006 1.5895 19 6 -0.3512 -3.9860 3.5968 20 16 0.2751 -5.2383 4.6575 21 6 -0.5723 -4.5499 6.0322 22 6 -1.2613 -3.4579 5.6659 23 6 -1.1452 -3.1260 4.3118 24 8 -1.7994 -2.0405 3.7746 25 6 -2.8565 -1.5178 4.5900 26 6 -2.3621 -1.3939 6.0349 27 8 -2.0260 -2.6969 6.5302 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0002 30 1 2.5808 -3.7745 -0.9488 31 1 2.7813 -3.6587 0.8161 32 1 1.5436 -6.5099 -1.1012 33 1 2.8596 -6.0580 0.0293 34 1 0.2160 -7.4935 0.6541 35 1 1.8708 -7.9101 1.2132 36 1 0.2421 -6.5058 2.8536 37 1 1.9615 -6.0316 2.7103 38 1 -0.5433 -4.9500 7.0349 39 1 -3.7119 -2.1925 4.5542 40 1 -3.1503 -0.5355 4.2200 41 1 -3.1485 -0.9611 6.6532 42 1 -1.4806 -0.7535 6.0656 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319122470.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:46 Heat of formation + Delta-G solvation = -57.349004 kcal Electronic energy + Delta-G solvation = -28446.623073 eV Core-core repulsion = 24519.572135 eV Total energy + Delta-G solvation = -3927.050938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.13799 -41.20507 -38.64035 -38.01958 -36.72045 -36.46121 -33.51283 -32.76182 -30.86743 -30.68866 -30.02349 -26.61774 -26.12917 -24.78502 -24.64851 -23.35958 -22.27815 -20.93584 -20.38724 -19.60906 -19.09930 -18.29859 -18.10148 -17.73767 -17.21077 -16.94296 -16.26172 -16.01119 -15.84966 -15.64085 -15.43067 -15.23364 -15.14641 -15.09952 -14.70478 -14.28289 -14.06826 -13.88185 -13.71366 -13.52484 -12.99688 -12.70411 -12.57752 -12.56718 -12.20960 -12.17171 -12.06319 -11.89032 -11.86385 -11.67952 -11.60962 -11.18616 -10.89426 -10.78562 -9.81854 -9.53617 -8.96784 -8.90046 -8.29505 -5.17564 -0.70102 0.27566 0.54453 1.07638 1.48380 1.62480 1.78452 1.93991 2.12645 2.29637 2.46913 2.73242 3.03787 3.44531 3.49143 3.54818 3.59611 3.82661 3.88803 3.94890 4.00561 4.14662 4.22294 4.28917 4.33359 4.35563 4.45893 4.50360 4.53994 4.69261 4.72687 4.80087 4.87191 4.95440 5.06345 5.11457 5.33996 5.47504 5.58489 5.61270 5.99423 6.52001 6.64079 7.13287 7.44146 8.25644 8.36965 9.23826 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.005941 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.755928 B = 4711.593622 C = 7262.467245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.108 4.108 3 Si 1.129 2.871 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.054 0.946 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.132 3.868 12 H 0.046 0.954 13 C -0.113 4.113 14 C -0.108 4.108 15 C 0.072 3.928 16 N -0.618 5.618 17 C 0.580 3.420 18 O -0.531 6.531 19 C -0.320 4.320 20 S 0.300 5.700 21 C -0.212 4.212 22 C 0.009 3.991 23 C 0.108 3.892 24 O -0.302 6.302 25 C 0.002 3.998 26 C 0.023 3.977 27 O -0.297 6.297 28 H 0.248 0.752 29 H 0.375 0.625 30 H 0.025 0.975 31 H 0.009 0.991 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.216 0.784 39 H 0.088 0.912 40 H 0.134 0.866 41 H 0.168 0.832 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -18.934 14.916 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.300 4.300 3 Si 0.954 3.046 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.072 0.928 9 N -0.404 5.404 10 C 0.020 3.980 11 C 0.028 3.972 12 H 0.064 0.936 13 C -0.151 4.151 14 C -0.146 4.146 15 C -0.051 4.051 16 N -0.354 5.354 17 C 0.370 3.630 18 O -0.408 6.408 19 C -0.439 4.439 20 S 0.564 5.436 21 C -0.348 4.348 22 C -0.046 4.046 23 C 0.046 3.954 24 O -0.215 6.215 25 C -0.073 4.073 26 C -0.053 4.053 27 O -0.212 6.212 28 H 0.059 0.941 29 H 0.215 0.785 30 H 0.042 0.958 31 H 0.027 0.973 32 H 0.120 0.880 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.233 0.767 39 H 0.106 0.894 40 H 0.152 0.848 41 H 0.185 0.815 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.609 -17.907 14.449 23.017 hybrid contribution -1.375 0.540 -0.086 1.480 sum -1.985 -17.367 14.364 22.624 Atomic orbital electron populations 1.70790 1.07110 1.28495 1.55163 1.27246 0.97295 1.04553 1.00930 0.82659 0.73317 0.71703 0.76946 1.21620 1.21077 1.19898 1.20332 0.91563 0.87983 1.47418 0.92829 1.43134 1.06301 1.01142 1.89788 1.21153 0.93901 0.85857 0.97088 1.21866 0.95813 0.97058 0.82486 0.93571 1.22654 1.00663 0.90322 1.01484 1.22763 1.03251 0.96714 0.91855 1.22853 1.01379 0.82698 0.98163 1.48403 1.55825 1.17873 1.13284 1.15756 0.78936 0.82343 0.85952 1.90844 1.51742 1.31396 1.66818 1.22689 1.15647 1.06848 0.98716 1.83573 1.46341 1.21808 0.91909 1.25885 1.01911 0.99704 1.07344 1.18327 1.01683 0.97730 0.86902 1.19450 0.95544 0.89184 0.91201 1.87265 1.47368 1.41780 1.45103 1.24025 0.88844 1.02678 0.91738 1.23793 1.03408 0.82834 0.95244 1.86992 1.67334 1.27323 1.39601 0.94148 0.78455 0.95765 0.97270 0.88045 0.89138 0.89658 0.85490 0.88722 0.89651 0.76735 0.89409 0.84849 0.81503 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -70.00 13.70 21.65 0.30 -69.71 16 2 C -0.11 -7.24 5.50 84.86 0.47 -6.77 16 3 Si 1.13 58.89 29.92 68.60 2.05 60.94 16 4 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 5 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.34 -22.47 9.99 84.03 0.84 -21.63 16 8 H 0.05 3.42 7.83 -2.91 -0.02 3.40 16 9 N -0.75 -45.83 4.41 -343.45 -1.52 -47.35 16 10 C 0.15 6.95 5.62 86.38 0.49 7.44 16 11 C 0.13 4.81 3.05 45.34 0.14 4.95 16 12 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.11 -2.45 6.46 31.78 0.21 -2.25 16 14 C -0.11 -1.64 7.09 31.99 0.23 -1.42 16 15 C 0.07 1.56 5.19 86.86 0.45 2.02 16 16 N -0.62 -22.15 3.06 -798.42 -2.45 -24.60 16 17 C 0.58 26.26 7.34 85.10 0.62 26.88 16 18 O -0.53 -30.88 12.02 11.36 0.14 -30.74 16 19 C -0.32 -11.97 6.15 22.87 0.14 -11.83 16 20 S 0.30 6.58 18.60 -56.49 -1.05 5.53 16 21 C -0.21 -4.58 11.17 66.90 0.75 -3.84 16 22 C 0.01 0.27 6.55 21.75 0.14 0.41 16 23 C 0.11 4.14 6.57 22.42 0.15 4.29 16 24 O -0.30 -13.13 9.62 -90.73 -0.87 -14.00 16 25 C 0.00 0.07 7.14 72.05 0.51 0.58 16 26 C 0.02 0.52 7.14 72.05 0.51 1.04 16 27 O -0.30 -7.82 10.77 -113.01 -1.22 -9.03 16 28 H 0.25 18.63 6.47 -92.70 -0.60 18.03 16 29 H 0.38 24.60 3.72 -92.71 -0.34 24.25 16 30 H 0.02 1.11 8.11 -2.38 -0.02 1.09 16 31 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.81 7.85 -2.38 -0.02 1.79 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.10 1.74 5.76 -11.98 -0.07 1.67 16 37 H 0.09 1.64 7.84 -2.39 -0.02 1.62 16 38 H 0.22 2.84 8.06 -2.91 -0.02 2.82 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.13 3.47 8.14 -2.39 -0.02 3.45 16 41 H 0.17 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -100.34 347.26 1.86 -98.48 By element: Atomic # 1 Polarization: 29.77 SS G_CDS: 0.83 Total: 30.60 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.64 Total: -0.13 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -3.67 Total: -141.65 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -1.95 Total: -53.77 kcal Atomic # 14 Polarization: 58.89 SS G_CDS: 2.05 Total: 60.94 kcal Atomic # 16 Polarization: 6.58 SS G_CDS: -1.05 Total: 5.53 kcal Total: -100.34 1.86 -98.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319122470.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.131 kcal (2) G-P(sol) polarization free energy of solvation -100.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds