Wall clock time and date at job start Tue Mar 31 2020 21:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48501 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47129 * 299.99966 * 3 2 1 6 6 H 1.48495 * 109.47237 * 59.99608 * 3 2 1 7 7 C 1.37879 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46899 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46961 * 179.97438 * 11 10 9 13 13 S 1.65600 * 119.99770 * 164.99840 * 12 11 10 14 14 O 1.42094 * 106.40341 * 311.45908 * 13 12 11 15 15 O 1.42100 * 106.39674 * 178.54120 * 13 12 11 16 16 C 1.76202 * 107.21716 * 65.00411 * 13 12 11 17 17 C 1.38304 * 119.92493 * 270.21402 * 16 13 12 18 18 C 1.38110 * 120.09254 * 180.24585 * 17 16 13 19 19 C 1.38863 * 119.88682 * 359.78979 * 18 17 16 20 20 C 1.38845 * 119.87458 * 359.97112 * 19 18 17 21 21 C 1.38097 * 119.97092 * 0.02562 * 20 19 18 22 22 C 1.50655 * 119.84777 * 180.02562 * 20 19 18 23 23 C 1.52906 * 109.52587 * 326.05151 * 22 20 19 24 24 C 1.50493 * 109.90882 * 48.56101 * 23 22 20 25 25 O 1.21288 * 119.60950 * 144.82188 * 24 23 22 26 26 N 1.34561 * 120.77252 * 324.85442 * 24 23 22 27 27 H 0.97005 * 119.99773 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47061 * 59.99791 * 9 7 2 29 29 H 1.08998 * 109.46842 * 300.00288 * 9 7 2 30 30 H 1.08994 * 109.47100 * 60.00257 * 10 9 7 31 31 H 1.08997 * 109.46727 * 299.99732 * 10 9 7 32 32 H 1.08999 * 109.47075 * 59.99774 * 11 10 9 33 33 H 1.08998 * 109.46968 * 300.00186 * 11 10 9 34 34 H 0.97005 * 119.99709 * 344.99951 * 12 11 10 35 35 H 1.07999 * 119.95366 * 0.03364 * 17 16 13 36 36 H 1.07997 * 120.05432 * 179.80861 * 18 17 16 37 37 H 1.08002 * 119.98303 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.45851 * 86.06620 * 22 20 19 39 39 H 1.09002 * 109.46228 * 206.02791 * 22 20 19 40 40 H 1.08995 * 109.39890 * 168.70574 * 23 22 20 41 41 H 1.09007 * 109.39268 * 288.52197 * 23 22 20 42 42 H 0.97001 * 119.77020 * 180.79078 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9871 0.0025 12 7 2.4319 -6.1007 0.0031 13 16 1.9169 -7.6300 0.3751 14 8 1.1539 -7.5173 1.5685 15 8 3.0525 -8.4759 0.2556 16 6 0.7933 -8.1239 -0.8892 17 6 -0.5565 -7.8537 -0.7568 18 6 -1.4409 -8.2437 -1.7432 19 6 -0.9720 -8.9043 -2.8711 20 6 0.3844 -9.1697 -3.0033 21 6 1.2638 -8.7771 -2.0135 22 6 0.8925 -9.8859 -4.2274 23 6 -0.1524 -10.8983 -4.6978 24 6 -1.5056 -10.2433 -4.7672 25 8 -2.2840 -10.5670 -5.6393 26 7 -1.8618 -9.3025 -3.8735 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8897 29 1 0.6238 -2.5566 0.8903 30 1 2.8710 -3.6041 0.8922 31 1 2.8723 -3.6048 -0.8877 32 1 0.8536 -5.0455 -0.8877 33 1 0.8529 -5.0441 0.8922 34 1 3.3639 -5.9422 -0.2144 35 1 -0.9200 -7.3399 0.1209 36 1 -2.4953 -8.0351 -1.6377 37 1 2.3189 -8.9838 -2.1159 38 1 1.0793 -9.1617 -5.0205 39 1 1.8192 -10.4062 -3.9853 40 1 0.1216 -11.2690 -5.6855 41 1 -0.1906 -11.7316 -3.9961 42 1 -2.7420 -8.8981 -3.9248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321554810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:56 Heat of formation + Delta-G solvation = -105.892042 kcal Electronic energy + Delta-G solvation = -26275.630675 eV Core-core repulsion = 22346.474753 eV Total energy + Delta-G solvation = -3929.155922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.47579 -39.16867 -37.27588 -36.05363 -35.88752 -35.75846 -34.51781 -33.27334 -30.90022 -30.67546 -30.15223 -26.42968 -25.19850 -23.78113 -23.34790 -23.01532 -20.65178 -20.19699 -19.11557 -18.52718 -17.78800 -17.51429 -17.10475 -16.55112 -16.41922 -15.81532 -15.44459 -15.07705 -14.72479 -14.53984 -14.49205 -14.37014 -14.18508 -13.85166 -13.77069 -13.05122 -12.67149 -12.57432 -12.38849 -12.23288 -12.15139 -12.03132 -12.00294 -11.66910 -11.57427 -11.32605 -11.03593 -10.95090 -10.79523 -10.56075 -10.55116 -9.97101 -9.50509 -9.36699 -9.29612 -9.12717 -8.78522 -8.40865 -6.05925 -4.08358 0.21229 0.49812 0.83638 1.93708 2.45359 2.91063 3.20816 3.27765 3.35755 3.39392 3.72339 3.79862 4.02814 4.12209 4.36508 4.40585 4.42604 4.60079 4.71519 4.82214 4.97392 5.18735 5.24631 5.29644 5.30614 5.35318 5.46811 5.55967 5.59304 5.61571 5.72220 5.88665 6.04291 6.10742 6.28926 6.52748 6.58660 6.71994 6.91531 7.10575 7.41806 7.59123 7.71384 7.93032 8.34837 8.98473 9.56220 11.05400 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.002604 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.041841 B =10751.580795 C =12072.181671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.116 4.116 11 C 0.112 3.888 12 N -1.113 6.113 13 S 2.697 3.303 14 O -0.956 6.956 15 O -0.967 6.967 16 C -0.695 4.695 17 C 0.015 3.985 18 C -0.170 4.170 19 C 0.212 3.788 20 C -0.149 4.149 21 C 0.019 3.981 22 C -0.078 4.078 23 C -0.139 4.139 24 C 0.523 3.477 25 O -0.522 6.522 26 N -0.664 5.664 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.418 0.582 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 -22.095 -6.755 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.155 4.155 11 C -0.013 4.013 12 N -0.874 5.874 13 S 2.786 3.214 14 O -0.946 6.946 15 O -0.957 6.957 16 C -0.783 4.783 17 C -0.005 4.005 18 C -0.192 4.192 19 C 0.115 3.885 20 C -0.153 4.153 21 C -0.001 4.001 22 C -0.115 4.115 23 C -0.179 4.179 24 C 0.311 3.689 25 O -0.397 6.397 26 N -0.308 5.308 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -0.281 -22.837 -6.565 23.763 hybrid contribution -0.155 1.432 -0.752 1.625 sum -0.436 -21.405 -7.316 22.625 Atomic orbital electron populations 1.69966 1.06050 1.26583 1.50782 1.25022 0.94861 0.99314 0.95267 0.86534 0.80103 0.83746 0.77593 1.19740 1.21044 1.20990 1.21251 0.93099 0.90918 1.50675 0.92551 1.19082 0.93946 0.91060 0.97593 1.21849 0.99637 0.92693 1.01324 1.21614 0.91340 0.86758 1.01582 1.55499 1.19467 1.24115 1.88333 1.01758 0.73310 0.72433 0.73936 1.93594 1.72552 1.86041 1.42422 1.93569 1.49482 1.65581 1.87076 1.31011 1.11187 1.17347 1.18708 1.20841 0.90777 0.91612 0.97298 1.20919 1.00980 1.03956 0.93333 1.17887 0.89070 0.93552 0.88019 1.19567 0.91386 1.05563 0.98736 1.20596 0.99892 0.90215 0.89412 1.20458 0.98701 0.97384 0.94960 1.21736 0.90875 0.99568 1.05727 1.20877 0.89880 0.78364 0.79737 1.90803 1.53604 1.61456 1.33845 1.43796 1.18255 1.39715 1.29041 0.93002 0.96345 0.96157 0.92318 0.92569 0.92124 0.90443 0.74742 0.83248 0.84203 0.83503 0.89437 0.88424 0.86902 0.87557 0.74645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.12 -2.11 5.30 -26.73 -0.14 -2.25 16 11 C 0.11 1.64 6.22 -4.04 -0.03 1.62 16 12 N -1.11 -13.45 6.00 -10.61 -0.06 -13.51 16 13 S 2.70 32.87 5.73 -107.50 -0.62 32.25 16 14 O -0.96 -14.47 16.75 -57.17 -0.96 -15.43 16 15 O -0.97 -13.26 17.28 -57.17 -0.99 -14.25 16 16 C -0.70 -7.28 5.95 -39.54 -0.24 -7.52 16 17 C 0.01 0.14 9.51 -39.60 -0.38 -0.23 16 18 C -0.17 -1.46 9.93 -39.40 -0.39 -1.85 16 19 C 0.21 1.82 6.50 -83.76 -0.54 1.27 16 20 C -0.15 -1.23 5.66 -104.47 -0.59 -1.82 16 21 C 0.02 0.17 9.16 -39.62 -0.36 -0.19 16 22 C -0.08 -0.44 6.00 -27.95 -0.17 -0.61 16 23 C -0.14 -0.82 6.08 -28.03 -0.17 -0.99 16 24 C 0.52 4.70 7.72 -11.18 -0.09 4.62 16 25 O -0.52 -6.55 17.91 5.55 0.10 -6.45 16 26 N -0.66 -5.28 5.36 -10.01 -0.05 -5.34 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.16 7.75 -51.93 -0.40 0.75 16 34 H 0.42 4.35 8.65 -34.48 -0.30 4.06 16 35 H 0.15 1.37 7.62 -52.49 -0.40 0.97 16 36 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.15 1.09 7.61 -52.49 -0.40 0.69 16 38 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.10 0.37 8.06 -51.93 -0.42 -0.04 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.11 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.41 2.74 8.83 -40.82 -0.36 2.38 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -35.69 368.51 -10.58 -46.27 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.63 Total: 0.68 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -3.64 Total: -20.54 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.62 Total: -44.14 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.85 Total: -36.13 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 32.87 SS G_CDS: -0.62 Total: 32.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.69 -10.58 -46.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321554810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.624 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds