Wall clock time and date at job start Tue Mar 31 2020 21:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00236 * 2 1 4 4 H 1.48501 * 109.46790 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47129 * 299.99966 * 3 2 1 6 6 H 1.48495 * 109.47237 * 59.99608 * 3 2 1 7 7 C 1.37879 * 119.99560 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99597 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00120 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47038 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46899 * 179.97438 * 10 9 7 12 12 N 1.46503 * 109.46961 * 179.97438 * 11 10 9 13 13 S 1.65600 * 119.99770 * 164.99840 * 12 11 10 14 14 O 1.42094 * 106.40341 * 311.45908 * 13 12 11 15 15 O 1.42100 * 106.39674 * 178.54120 * 13 12 11 16 16 C 1.76202 * 107.21716 * 65.00411 * 13 12 11 17 17 C 1.38304 * 119.92493 * 270.21402 * 16 13 12 18 18 C 1.38110 * 120.09254 * 180.24585 * 17 16 13 19 19 C 1.38863 * 119.88682 * 359.78979 * 18 17 16 20 20 C 1.38845 * 119.87458 * 359.97112 * 19 18 17 21 21 C 1.38097 * 119.97092 * 0.02562 * 20 19 18 22 22 C 1.50655 * 119.84777 * 180.02562 * 20 19 18 23 23 C 1.52906 * 109.52587 * 326.05151 * 22 20 19 24 24 C 1.50493 * 109.90882 * 48.56101 * 23 22 20 25 25 O 1.21288 * 119.60950 * 144.82188 * 24 23 22 26 26 N 1.34561 * 120.77252 * 324.85442 * 24 23 22 27 27 H 0.97005 * 119.99773 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47061 * 59.99791 * 9 7 2 29 29 H 1.08998 * 109.46842 * 300.00288 * 9 7 2 30 30 H 1.08994 * 109.47100 * 60.00257 * 10 9 7 31 31 H 1.08997 * 109.46727 * 299.99732 * 10 9 7 32 32 H 1.08999 * 109.47075 * 59.99774 * 11 10 9 33 33 H 1.08998 * 109.46968 * 300.00186 * 11 10 9 34 34 H 0.97005 * 119.99709 * 344.99951 * 12 11 10 35 35 H 1.07999 * 119.95366 * 0.03364 * 17 16 13 36 36 H 1.07997 * 120.05432 * 179.80861 * 18 17 16 37 37 H 1.08002 * 119.98303 * 179.97438 * 21 20 19 38 38 H 1.09008 * 109.45851 * 86.06620 * 22 20 19 39 39 H 1.09002 * 109.46228 * 206.02791 * 22 20 19 40 40 H 1.08995 * 109.39890 * 168.70574 * 23 22 20 41 41 H 1.09007 * 109.39268 * 288.52197 * 23 22 20 42 42 H 0.97001 * 119.77020 * 180.79078 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9871 0.0025 12 7 2.4319 -6.1007 0.0031 13 16 1.9169 -7.6300 0.3751 14 8 1.1539 -7.5173 1.5685 15 8 3.0525 -8.4759 0.2556 16 6 0.7933 -8.1239 -0.8892 17 6 -0.5565 -7.8537 -0.7568 18 6 -1.4409 -8.2437 -1.7432 19 6 -0.9720 -8.9043 -2.8711 20 6 0.3844 -9.1697 -3.0033 21 6 1.2638 -8.7771 -2.0135 22 6 0.8925 -9.8859 -4.2274 23 6 -0.1524 -10.8983 -4.6978 24 6 -1.5056 -10.2433 -4.7672 25 8 -2.2840 -10.5670 -5.6393 26 7 -1.8618 -9.3025 -3.8735 27 1 -0.4850 0.8401 -0.0004 28 1 0.6245 -2.5571 -0.8897 29 1 0.6238 -2.5566 0.8903 30 1 2.8710 -3.6041 0.8922 31 1 2.8723 -3.6048 -0.8877 32 1 0.8536 -5.0455 -0.8877 33 1 0.8529 -5.0441 0.8922 34 1 3.3639 -5.9422 -0.2144 35 1 -0.9200 -7.3399 0.1209 36 1 -2.4953 -8.0351 -1.6377 37 1 2.3189 -8.9838 -2.1159 38 1 1.0793 -9.1617 -5.0205 39 1 1.8192 -10.4062 -3.9853 40 1 0.1216 -11.2690 -5.6855 41 1 -0.1906 -11.7316 -3.9961 42 1 -2.7420 -8.8981 -3.9248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321554810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:55 Heat of formation + Delta-G solvation = -132.160280 kcal Electronic energy + Delta-G solvation = -26276.769751 eV Core-core repulsion = 22346.474753 eV Total energy + Delta-G solvation = -3930.294998 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.13253 -39.89998 -38.34620 -37.33836 -36.94572 -36.53533 -35.13533 -35.06564 -32.59812 -31.31764 -30.84469 -28.17014 -25.74562 -24.75070 -24.50422 -23.95993 -22.19550 -20.98424 -20.04036 -19.19666 -18.64511 -18.52658 -18.32915 -17.93105 -17.19605 -16.89288 -16.45944 -16.11732 -16.04555 -15.85652 -15.47604 -15.15743 -14.80360 -14.55563 -14.45783 -14.28602 -14.00894 -13.72739 -13.62123 -13.26245 -13.20496 -13.14601 -13.09953 -12.80966 -12.66415 -12.50455 -12.35147 -12.25297 -12.02472 -11.86247 -11.62571 -11.35902 -11.24945 -11.10669 -10.51866 -10.39857 -10.01359 -9.48095 -8.17043 -6.26523 -0.64879 -0.35516 0.16550 1.24929 1.42134 1.43586 1.55579 1.82621 2.01992 2.41142 2.44315 2.79497 3.17278 3.19806 3.31321 3.57774 3.60127 3.88715 4.04584 4.09587 4.18838 4.23868 4.28125 4.33073 4.54575 4.70672 4.74464 4.78176 4.80648 4.85648 4.96582 5.03301 5.03553 5.06089 5.24202 5.27843 5.48296 5.58279 5.62079 5.80403 5.90600 5.93490 6.13079 6.29171 6.76333 6.91148 7.42519 8.94737 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.012759 B = 0.002604 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.041841 B =10751.580795 C =12072.181671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.121 3.879 12 N -1.108 6.108 13 S 2.715 3.285 14 O -0.989 6.989 15 O -0.980 6.980 16 C -0.700 4.700 17 C -0.002 4.002 18 C -0.171 4.171 19 C 0.207 3.793 20 C -0.148 4.148 21 C 0.013 3.987 22 C -0.076 4.076 23 C -0.135 4.135 24 C 0.519 3.481 25 O -0.564 6.564 26 N -0.660 5.660 27 H 0.262 0.738 28 H 0.001 0.999 29 H -0.004 1.004 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.427 0.573 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.518 -22.813 -7.719 24.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.578 4.578 8 H 0.079 0.921 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.004 4.004 12 N -0.869 5.869 13 S 2.807 3.193 14 O -0.980 6.980 15 O -0.971 6.971 16 C -0.790 4.790 17 C -0.022 4.022 18 C -0.192 4.192 19 C 0.110 3.890 20 C -0.152 4.152 21 C -0.007 4.007 22 C -0.113 4.113 23 C -0.174 4.174 24 C 0.310 3.690 25 O -0.442 6.442 26 N -0.303 5.303 27 H 0.071 0.929 28 H 0.019 0.981 29 H 0.014 0.986 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.263 0.737 35 H 0.168 0.832 36 H 0.177 0.823 37 H 0.182 0.818 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.146 0.854 41 H 0.139 0.861 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.162 -23.543 -7.490 24.733 hybrid contribution -0.642 1.612 -0.476 1.800 sum 0.520 -21.930 -7.967 23.338 Atomic orbital electron populations 1.70088 1.07652 1.27569 1.51938 1.25922 0.95729 1.03165 0.94999 0.85466 0.79193 0.79189 0.77593 1.18592 1.20557 1.20727 1.21742 0.93642 0.92371 1.50025 0.92069 1.18996 0.94517 0.92638 0.95522 1.21620 0.98535 0.92382 1.01890 1.21341 0.91268 0.85744 1.02095 1.55274 1.19715 1.23484 1.88447 1.00940 0.72849 0.71880 0.73619 1.93552 1.73157 1.86381 1.44868 1.93545 1.50422 1.65703 1.87408 1.30661 1.10836 1.18755 1.18780 1.20970 0.90941 0.92362 0.97940 1.21132 1.01879 1.03317 0.92875 1.18034 0.89518 0.93456 0.88020 1.19876 0.91086 1.04903 0.99322 1.20846 1.00997 0.89863 0.88957 1.20568 0.99468 0.97458 0.93809 1.21812 0.88841 0.99699 1.07078 1.21504 0.90662 0.77958 0.78902 1.90786 1.55087 1.62829 1.35508 1.43798 1.18448 1.39400 1.28629 0.92885 0.98082 0.98560 0.92296 0.91411 0.90798 0.91027 0.73689 0.83210 0.82293 0.81766 0.88839 0.85849 0.85440 0.86085 0.74182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -29.29 9.11 25.60 0.23 -29.06 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 9 C 0.02 1.04 4.97 29.85 0.15 1.18 16 10 C -0.11 -3.78 5.30 30.60 0.16 -3.62 16 11 C 0.12 3.48 6.22 86.38 0.54 4.02 16 12 N -1.11 -25.49 6.00 -187.48 -1.12 -26.62 16 13 S 2.71 63.93 5.73 -56.49 -0.32 63.60 16 14 O -0.99 -29.91 16.75 -128.00 -2.14 -32.05 16 15 O -0.98 -25.62 17.28 -128.00 -2.21 -27.83 16 16 C -0.70 -13.77 5.95 22.29 0.13 -13.64 16 17 C 0.00 -0.04 9.51 22.25 0.21 0.17 16 18 C -0.17 -2.70 9.93 22.39 0.22 -2.48 16 19 C 0.21 3.20 6.50 38.16 0.25 3.44 16 20 C -0.15 -2.09 5.66 -19.77 -0.11 -2.21 16 21 C 0.01 0.21 9.16 22.25 0.20 0.41 16 22 C -0.08 -0.63 6.00 29.80 0.18 -0.45 16 23 C -0.13 -1.23 6.08 29.75 0.18 -1.05 16 24 C 0.52 8.63 7.72 87.63 0.68 9.31 16 25 O -0.56 -13.87 17.91 -3.05 -0.05 -13.92 16 26 N -0.66 -9.63 5.36 -304.09 -1.63 -11.26 16 27 H 0.26 14.58 8.31 -92.70 -0.77 13.80 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 2.15 7.75 -2.39 -0.02 2.13 16 34 H 0.43 8.22 8.65 -96.74 -0.84 7.38 16 35 H 0.15 2.75 7.62 -2.91 -0.02 2.72 16 36 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.16 1.97 7.61 -2.91 -0.02 1.95 16 38 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 39 H 0.12 0.44 8.06 -2.39 -0.02 0.42 16 40 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.42 5.18 8.83 -92.71 -0.82 4.36 16 Total: -1.00 -76.70 368.51 -2.28 -78.98 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -0.59 Total: 12.22 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.49 Total: -33.52 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -2.47 Total: -92.60 kcal Atomic # 8 Polarization: -69.40 SS G_CDS: -4.41 Total: -73.81 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 63.93 SS G_CDS: -0.32 Total: 63.60 kcal Total: -76.70 -2.28 -78.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321554810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.177 kcal (2) G-P(sol) polarization free energy of solvation -76.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds