Wall clock time and date at job start Tue Mar 31 2020 21:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99630 * 2 1 4 4 N 1.46498 * 109.47062 * 125.00005 * 3 2 1 5 5 C 1.35063 * 125.56631 * 269.99531 * 4 3 2 6 6 O 1.21298 * 127.28415 * 359.96359 * 5 4 3 7 7 C 1.49981 * 105.43263 * 180.02562 * 5 4 3 8 8 O 1.21301 * 127.28569 * 179.97438 * 7 5 4 9 9 N 1.35067 * 105.42893 * 359.74894 * 7 5 4 10 10 C 1.46500 * 125.56421 * 180.24162 * 9 7 5 11 11 C 1.50707 * 109.46843 * 270.19694 * 10 9 7 12 12 O 1.21277 * 119.99777 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47283 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00005 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00331 * 180.02562 * 15 14 13 18 18 C 1.37090 * 120.00282 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00401 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99706 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47359 * 90.00361 * 22 20 18 24 24 H 1.48503 * 109.46975 * 210.00007 * 22 20 18 25 25 H 1.48492 * 109.47264 * 330.00005 * 22 20 18 26 26 C 1.34274 * 108.86813 * 0.41039 * 9 7 5 27 27 O 1.21483 * 124.30014 * 179.82736 * 26 9 7 28 28 H 1.07994 * 120.00324 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99577 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.00047 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47381 * 4.99694 * 3 2 1 32 32 H 1.09005 * 109.46862 * 244.99775 * 3 2 1 33 33 H 1.08996 * 109.47646 * 30.19703 * 10 9 7 34 34 H 1.09003 * 109.47437 * 150.20464 * 10 9 7 35 35 H 0.96998 * 120.00366 * 0.02562 * 13 11 10 36 36 H 1.09007 * 109.47117 * 299.99896 * 14 13 11 37 37 H 1.08999 * 109.47596 * 60.00202 * 14 13 11 38 38 H 0.97001 * 119.99618 * 359.97438 * 17 15 14 39 39 H 0.96996 * 119.99944 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7131 1.7963 2.3683 6 8 1.6639 2.2651 2.7566 7 6 3.9737 1.6113 3.1595 8 8 4.1595 1.8981 4.3234 9 7 4.8566 1.0530 2.3034 10 6 6.2362 0.6796 2.6254 11 6 7.1494 1.8467 2.3514 12 8 6.6927 2.8879 1.9293 13 7 8.4735 1.7333 2.5756 14 6 9.3612 2.8681 2.3098 15 6 10.7805 2.4836 2.6397 16 8 11.0264 1.3713 3.0563 17 7 11.7767 3.3761 2.4728 18 6 13.0677 3.0265 2.7734 19 1 13.2867 2.0358 3.1436 20 6 14.0947 3.9463 2.6009 21 7 13.8283 5.1517 2.1500 22 14 15.8540 3.4698 3.0098 23 1 16.5033 2.8929 1.8053 24 1 16.6041 4.6744 3.4475 25 1 15.8531 2.4634 4.1016 26 6 4.2647 0.8994 1.1080 27 8 4.8083 0.4247 0.1308 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8501 -0.9354 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 6.3023 0.4059 3.6783 34 1 6.5362 -0.1686 2.0099 35 1 8.8388 0.9004 2.9128 36 1 9.2949 3.1425 1.2569 37 1 9.0616 3.7159 2.9258 38 1 11.5800 4.2657 2.1400 39 1 14.5452 5.7939 2.0299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329568204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:20 Heat of formation + Delta-G solvation = -96.195641 kcal Electronic energy + Delta-G solvation = -28234.573033 eV Core-core repulsion = 23759.544364 eV Total energy + Delta-G solvation = -4475.028669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.75311 -40.00170 -39.59778 -39.07708 -38.17172 -36.86867 -36.30413 -34.61229 -34.09252 -33.81440 -31.45857 -30.42523 -28.08374 -26.59491 -25.94960 -24.51235 -22.54794 -22.37324 -20.68180 -20.46232 -19.72079 -18.53162 -18.26453 -18.07798 -17.48991 -17.15038 -17.03201 -16.54357 -15.76796 -15.65820 -15.56753 -15.36961 -15.13694 -14.88668 -14.83366 -14.45039 -14.24573 -14.01088 -13.95881 -13.44545 -13.11624 -12.84218 -12.73275 -12.29584 -12.05848 -11.95992 -11.67871 -11.41418 -11.16232 -11.00132 -10.68548 -10.49521 -10.48293 -10.36271 -10.05214 -9.84994 -9.68825 -9.02828 -8.71353 -8.15818 -6.56323 -3.98657 -0.07188 1.12175 1.48284 1.92652 2.14984 2.15509 2.46604 3.08350 3.11298 3.20006 3.25684 3.48313 3.66942 4.06525 4.07838 4.25134 4.44692 4.52171 4.70445 4.73203 4.77478 4.79178 4.84806 5.02608 5.11897 5.19584 5.33447 5.78593 5.84966 5.97363 5.98201 6.04709 6.16422 6.26187 6.43846 6.76576 7.11447 7.41471 7.51133 7.85631 8.12867 8.38747 8.99199 9.32969 9.80162 10.60360 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030476 B = 0.001965 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.548513 B =14245.524791 C =14481.471455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.188 4.188 3 C 0.149 3.851 4 N -0.569 5.569 5 C 0.515 3.485 6 O -0.410 6.410 7 C 0.513 3.487 8 O -0.404 6.404 9 N -0.558 5.558 10 C 0.103 3.897 11 C 0.497 3.503 12 O -0.539 6.539 13 N -0.697 5.697 14 C 0.109 3.891 15 C 0.426 3.574 16 O -0.598 6.598 17 N -0.547 5.547 18 C -0.306 4.306 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.893 5.893 22 Si 0.934 3.066 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.268 1.268 26 C 0.716 3.284 27 O -0.481 6.481 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.414 0.586 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.808 -8.981 -3.745 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.207 4.207 3 C 0.030 3.970 4 N -0.318 5.318 5 C 0.295 3.705 6 O -0.274 6.274 7 C 0.293 3.707 8 O -0.267 6.267 9 N -0.306 5.306 10 C -0.021 4.021 11 C 0.281 3.719 12 O -0.417 6.417 13 N -0.351 5.351 14 C -0.018 4.018 15 C 0.212 3.788 16 O -0.484 6.484 17 N -0.181 5.181 18 C -0.436 4.436 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.533 5.533 22 Si 0.761 3.239 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.193 1.193 26 C 0.419 3.581 27 O -0.349 6.349 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.253 0.747 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.964 -8.619 -3.487 25.705 hybrid contribution 1.111 0.074 0.020 1.113 sum -22.854 -8.546 -3.467 24.644 Atomic orbital electron populations 1.24016 0.95546 1.02764 0.96897 1.23140 0.96376 0.98244 1.02931 1.20920 0.91116 0.97566 0.87408 1.46734 1.13064 1.58314 1.13689 1.20822 0.89100 0.77986 0.82569 1.90841 1.26131 1.36859 1.73615 1.20837 0.85572 0.77480 0.86786 1.90869 1.79664 1.42774 1.13416 1.46133 1.13909 1.58596 1.11957 1.21608 0.76674 0.97849 1.06013 1.20527 0.83178 0.89446 0.78791 1.90735 1.75743 1.29672 1.45522 1.45549 1.05786 1.17897 1.65900 1.21007 0.89403 0.89021 1.02390 1.19670 0.86056 0.86768 0.86313 1.90498 1.83586 1.21864 1.52493 1.41793 1.06454 1.13862 1.56002 1.19735 0.81720 1.00542 1.41559 0.87590 1.25346 1.00761 0.94939 0.96658 1.69614 1.34374 1.04789 1.44538 0.85794 0.81085 0.78062 0.78984 1.20232 1.20772 1.19284 1.15809 0.80810 0.78146 0.83297 1.91043 1.66482 1.44271 1.33113 0.87866 0.87569 0.86393 0.87586 0.86877 0.84683 0.84542 0.74736 0.89577 0.89583 0.77011 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 14.32 29.01 0.42 -0.30 16 2 C -0.19 -1.07 9.85 -36.03 -0.35 -1.42 16 3 C 0.15 0.94 6.30 -5.20 -0.03 0.91 16 4 N -0.57 -5.13 2.64 -122.51 -0.32 -5.45 16 5 C 0.51 5.36 8.31 -11.20 -0.09 5.27 16 6 O -0.41 -4.91 17.88 5.54 0.10 -4.81 16 7 C 0.51 5.86 8.31 -11.20 -0.09 5.76 16 8 O -0.40 -5.50 17.89 5.54 0.10 -5.40 16 9 N -0.56 -5.92 2.15 -122.50 -0.26 -6.18 16 10 C 0.10 0.97 6.34 -5.19 -0.03 0.94 16 11 C 0.50 6.96 7.90 -10.98 -0.09 6.87 16 12 O -0.54 -9.41 16.43 5.56 0.09 -9.32 16 13 N -0.70 -10.33 5.53 -61.47 -0.34 -10.67 16 14 C 0.11 1.89 6.15 -5.19 -0.03 1.86 16 15 C 0.43 9.36 7.85 -10.98 -0.09 9.27 16 16 O -0.60 -14.58 15.24 5.55 0.08 -14.49 16 17 N -0.55 -13.19 5.29 -10.96 -0.06 -13.24 16 18 C -0.31 -8.14 9.68 -14.94 -0.14 -8.29 16 19 H 0.11 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 21 N -0.89 -23.49 13.05 55.50 0.72 -22.76 16 22 Si 0.93 20.20 29.55 -169.99 -5.02 15.17 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C 0.72 7.63 8.32 -87.81 -0.73 6.90 16 27 O -0.48 -6.03 17.27 5.38 0.09 -5.93 16 28 H 0.10 0.40 7.84 -52.49 -0.41 -0.01 16 29 H 0.11 0.38 8.06 -52.48 -0.42 -0.04 16 30 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 31 H 0.11 0.54 7.75 -51.93 -0.40 0.14 16 32 H 0.11 0.64 7.98 -51.93 -0.41 0.23 16 33 H 0.14 0.93 8.10 -51.93 -0.42 0.51 16 34 H 0.14 0.96 7.98 -51.93 -0.41 0.54 16 35 H 0.41 5.75 7.44 -40.82 -0.30 5.45 16 36 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 38 H 0.40 9.21 7.90 -40.82 -0.32 8.89 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 365.91 15.07 5.51 5.51 Total: -1.00 -34.11 365.91 -4.56 -38.67 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -3.89 Total: 10.56 kcal Atomic # 6 Polarization: 29.73 SS G_CDS: -1.37 Total: 28.36 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.26 Total: -58.31 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: 0.47 Total: -39.96 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.11 -4.56 -38.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329568204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.529 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds