Wall clock time and date at job start Tue Mar 31 2020 21:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 119.99630 * 2 1 4 4 N 1.46498 * 109.47062 * 125.00005 * 3 2 1 5 5 C 1.35063 * 125.56631 * 269.99531 * 4 3 2 6 6 O 1.21298 * 127.28415 * 359.96359 * 5 4 3 7 7 C 1.49981 * 105.43263 * 180.02562 * 5 4 3 8 8 O 1.21301 * 127.28569 * 179.97438 * 7 5 4 9 9 N 1.35067 * 105.42893 * 359.74894 * 7 5 4 10 10 C 1.46500 * 125.56421 * 180.24162 * 9 7 5 11 11 C 1.50707 * 109.46843 * 270.19694 * 10 9 7 12 12 O 1.21277 * 119.99777 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99816 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99820 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47283 * 180.02562 * 14 13 11 16 16 O 1.21291 * 120.00005 * 359.97438 * 15 14 13 17 17 N 1.34781 * 120.00331 * 180.02562 * 15 14 13 18 18 C 1.37090 * 120.00282 * 179.97438 * 17 15 14 19 19 H 1.08006 * 119.99959 * 0.02562 * 18 17 15 20 20 C 1.38946 * 120.00401 * 179.97438 * 18 17 15 21 21 N 1.31417 * 119.99706 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47359 * 90.00361 * 22 20 18 24 24 H 1.48503 * 109.46975 * 210.00007 * 22 20 18 25 25 H 1.48492 * 109.47264 * 330.00005 * 22 20 18 26 26 C 1.34274 * 108.86813 * 0.41039 * 9 7 5 27 27 O 1.21483 * 124.30014 * 179.82736 * 26 9 7 28 28 H 1.07994 * 120.00324 * 0.02562 * 1 2 3 29 29 H 1.08004 * 119.99577 * 179.97438 * 1 2 3 30 30 H 1.08006 * 120.00047 * 179.97438 * 2 1 3 31 31 H 1.09003 * 109.47381 * 4.99694 * 3 2 1 32 32 H 1.09005 * 109.46862 * 244.99775 * 3 2 1 33 33 H 1.08996 * 109.47646 * 30.19703 * 10 9 7 34 34 H 1.09003 * 109.47437 * 150.20464 * 10 9 7 35 35 H 0.96998 * 120.00366 * 0.02562 * 13 11 10 36 36 H 1.09007 * 109.47117 * 299.99896 * 14 13 11 37 37 H 1.08999 * 109.47596 * 60.00202 * 14 13 11 38 38 H 0.97001 * 119.99618 * 359.97438 * 17 15 14 39 39 H 0.96996 * 119.99944 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.7131 1.7963 2.3683 6 8 1.6639 2.2651 2.7566 7 6 3.9737 1.6113 3.1595 8 8 4.1595 1.8981 4.3234 9 7 4.8566 1.0530 2.3034 10 6 6.2362 0.6796 2.6254 11 6 7.1494 1.8467 2.3514 12 8 6.6927 2.8879 1.9293 13 7 8.4735 1.7333 2.5756 14 6 9.3612 2.8681 2.3098 15 6 10.7805 2.4836 2.6397 16 8 11.0264 1.3713 3.0563 17 7 11.7767 3.3761 2.4728 18 6 13.0677 3.0265 2.7734 19 1 13.2867 2.0358 3.1436 20 6 14.0947 3.9463 2.6009 21 7 13.8283 5.1517 2.1500 22 14 15.8540 3.4698 3.0098 23 1 16.5033 2.8929 1.8053 24 1 16.6041 4.6744 3.4475 25 1 15.8531 2.4634 4.1016 26 6 4.2647 0.8994 1.1080 27 8 4.8083 0.4247 0.1308 28 1 -0.5400 0.9352 -0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8501 -0.9354 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6212 1.4026 -0.9314 33 1 6.3023 0.4059 3.6783 34 1 6.5362 -0.1686 2.0099 35 1 8.8388 0.9004 2.9128 36 1 9.2949 3.1425 1.2569 37 1 9.0616 3.7159 2.9258 38 1 11.5800 4.2657 2.1400 39 1 14.5452 5.7939 2.0299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329568204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:19 Heat of formation + Delta-G solvation = -122.360329 kcal Electronic energy + Delta-G solvation = -28235.707619 eV Core-core repulsion = 23759.544364 eV Total energy + Delta-G solvation = -4476.163255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.60023 -41.17286 -40.51779 -40.22934 -39.70847 -37.74672 -37.04801 -36.27379 -35.38985 -34.69984 -33.38234 -31.32802 -29.27855 -27.60428 -26.78435 -26.23343 -23.43666 -23.18395 -21.73130 -21.40969 -21.00092 -20.11870 -19.41767 -19.07669 -18.40933 -18.25469 -17.90506 -17.48320 -17.21538 -16.88904 -16.63404 -16.46505 -16.30220 -16.03412 -15.81340 -15.69618 -15.55648 -15.44807 -14.81234 -14.53446 -14.03999 -13.96782 -13.92921 -13.54575 -13.31924 -13.25093 -12.90212 -12.51428 -12.45483 -12.29373 -12.13076 -12.01694 -11.56734 -11.53352 -11.20636 -10.92342 -10.56393 -10.49207 -10.31014 -10.09314 -8.51271 -6.01395 -0.95894 0.41465 0.68691 1.25697 1.27483 1.35164 1.38091 1.43548 1.47665 1.55873 1.90516 1.98090 2.30903 2.62952 3.10106 3.16120 3.37863 3.49601 3.80950 3.89568 3.92141 4.10623 4.12222 4.20484 4.21833 4.40192 4.41452 4.54698 4.60710 4.98413 5.14442 5.31111 5.38492 5.39766 5.61730 5.68365 5.90445 5.91519 6.25742 6.37244 6.47951 6.97819 7.03469 7.43859 7.93401 8.65507 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030476 B = 0.001965 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.548513 B =14245.524791 C =14481.471455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.203 4.203 3 C 0.142 3.858 4 N -0.560 5.560 5 C 0.524 3.476 6 O -0.425 6.425 7 C 0.516 3.484 8 O -0.429 6.429 9 N -0.557 5.557 10 C 0.105 3.895 11 C 0.497 3.503 12 O -0.576 6.576 13 N -0.696 5.696 14 C 0.122 3.878 15 C 0.433 3.567 16 O -0.621 6.621 17 N -0.560 5.560 18 C -0.336 4.336 19 H 0.088 0.912 20 C -0.012 4.012 21 N -0.917 5.917 22 Si 0.997 3.003 23 H -0.270 1.270 24 H -0.273 1.273 25 H -0.269 1.269 26 C 0.720 3.280 27 O -0.498 6.498 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.420 0.580 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.398 0.602 39 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.585 -9.793 -3.994 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.222 4.222 3 C 0.025 3.975 4 N -0.308 5.308 5 C 0.304 3.696 6 O -0.291 6.291 7 C 0.297 3.703 8 O -0.294 6.294 9 N -0.305 5.305 10 C -0.018 4.018 11 C 0.283 3.717 12 O -0.456 6.456 13 N -0.351 5.351 14 C -0.006 4.006 15 C 0.220 3.780 16 O -0.509 6.509 17 N -0.196 5.196 18 C -0.466 4.466 19 H 0.106 0.894 20 C -0.212 4.212 21 N -0.557 5.557 22 Si 0.820 3.180 23 H -0.196 1.196 24 H -0.198 1.198 25 H -0.194 1.194 26 C 0.423 3.577 27 O -0.367 6.367 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.260 0.740 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.769 -9.451 -3.760 26.776 hybrid contribution 1.245 0.294 0.062 1.281 sum -23.524 -9.157 -3.698 25.512 Atomic orbital electron populations 1.24222 0.95245 1.03756 0.94950 1.23082 0.96742 0.97707 1.04653 1.21215 0.91079 0.98642 0.86614 1.46801 1.12833 1.57365 1.13802 1.20609 0.88487 0.77697 0.82789 1.90836 1.26582 1.37729 1.73948 1.20985 0.86020 0.76801 0.86499 1.90856 1.80231 1.43844 1.14440 1.46183 1.14170 1.58263 1.11844 1.21857 0.75084 0.96306 1.08586 1.21259 0.82915 0.90163 0.77405 1.90722 1.76214 1.31507 1.47107 1.45526 1.06018 1.17344 1.66175 1.20783 0.86707 0.90153 1.02984 1.20379 0.87411 0.85888 0.84298 1.90477 1.84539 1.22858 1.53010 1.41856 1.06375 1.14377 1.56948 1.19747 0.83312 1.00310 1.43182 0.89373 1.26135 1.04221 0.94755 0.96116 1.69681 1.35600 1.05426 1.44950 0.84862 0.76439 0.77912 0.78755 1.19585 1.19828 1.19360 1.15862 0.81107 0.77753 0.82971 1.91036 1.66946 1.45108 1.33616 0.87054 0.86432 0.86702 0.86236 0.86286 0.81646 0.81523 0.74024 0.88719 0.88796 0.76767 0.91115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 14.32 67.78 0.97 -0.08 16 2 C -0.20 -2.01 9.85 25.64 0.25 -1.75 16 3 C 0.14 1.60 6.30 85.63 0.54 2.14 16 4 N -0.56 -9.38 2.64 -778.32 -2.06 -11.44 16 5 C 0.52 10.37 8.31 87.39 0.73 11.09 16 6 O -0.43 -9.78 17.88 -3.09 -0.06 -9.83 16 7 C 0.52 11.23 8.31 87.39 0.73 11.96 16 8 O -0.43 -11.34 17.89 -3.09 -0.06 -11.39 16 9 N -0.56 -10.93 2.15 -778.30 -1.67 -12.60 16 10 C 0.10 1.75 6.34 85.64 0.54 2.29 16 11 C 0.50 13.14 7.90 87.66 0.69 13.83 16 12 O -0.58 -19.55 16.43 -3.02 -0.05 -19.60 16 13 N -0.70 -19.69 5.53 -466.78 -2.58 -22.27 16 14 C 0.12 4.13 6.15 85.63 0.53 4.65 16 15 C 0.43 19.00 7.85 87.66 0.69 19.69 16 16 O -0.62 -30.28 15.24 -3.06 -0.05 -30.33 16 17 N -0.56 -27.33 5.29 -306.98 -1.62 -28.95 16 18 C -0.34 -18.11 9.68 84.04 0.81 -17.30 16 19 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 20 C -0.01 -0.60 5.50 84.92 0.47 -0.13 16 21 N -0.92 -48.14 13.05 21.66 0.28 -47.86 16 22 Si 1.00 41.14 29.55 68.60 2.03 43.16 16 23 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 C 0.72 14.31 8.32 179.37 1.49 15.80 16 27 O -0.50 -11.74 17.27 -3.66 -0.06 -11.80 16 28 H 0.11 0.63 7.84 -2.91 -0.02 0.61 16 29 H 0.12 0.59 8.06 -2.91 -0.02 0.57 16 30 H 0.12 1.20 8.06 -2.91 -0.02 1.17 16 31 H 0.12 1.01 7.75 -2.39 -0.02 1.00 16 32 H 0.12 1.20 7.98 -2.38 -0.02 1.18 16 33 H 0.17 1.80 8.10 -2.39 -0.02 1.78 16 34 H 0.17 1.83 7.98 -2.39 -0.02 1.81 16 35 H 0.42 11.04 7.44 -92.71 -0.69 10.35 16 36 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.07 16 38 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 39 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 Total: -1.00 -72.94 365.91 2.27 -70.67 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.28 Total: 30.04 kcal Atomic # 6 Polarization: 53.77 SS G_CDS: 8.44 Total: 62.21 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -7.65 Total: -123.13 kcal Atomic # 8 Polarization: -82.69 SS G_CDS: -0.27 Total: -82.96 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -72.94 2.27 -70.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329568204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.687 kcal (2) G-P(sol) polarization free energy of solvation -72.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds