Wall clock time and date at job start Tue Mar 31 2020 21:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 120.00356 * 2 1 4 4 S 1.65604 * 119.99979 * 180.02562 * 2 1 3 5 5 O 1.42097 * 106.40013 * 336.45812 * 4 2 1 6 6 O 1.42100 * 106.40461 * 203.53634 * 4 2 1 7 7 N 1.65597 * 107.21817 * 89.99906 * 4 2 1 8 8 C 1.36939 * 120.00345 * 85.08249 * 7 4 2 9 9 H 1.07994 * 119.99467 * 322.33872 * 8 7 4 10 10 C 1.38811 * 119.99691 * 142.34284 * 8 7 4 11 11 N 1.31618 * 120.00324 * 338.08040 * 10 8 7 12 12 Si 1.86801 * 119.99652 * 158.08622 * 10 8 7 13 13 H 1.48502 * 109.47210 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47555 * 119.99707 * 12 10 8 15 15 H 1.48501 * 109.47016 * 239.99769 * 12 10 8 16 16 C 1.46506 * 119.99869 * 265.08102 * 7 4 2 17 17 C 1.50706 * 109.47170 * 96.48515 * 16 7 4 18 18 C 1.35318 * 126.03580 * 5.30150 * 17 16 7 19 19 N 1.34954 * 107.74331 * 179.87388 * 18 17 16 20 20 C 1.46494 * 126.03926 * 180.15088 * 19 18 17 21 21 N 1.40089 * 107.92525 * 0.38973 * 19 18 17 22 22 C 1.30845 * 108.20262 * 359.75803 * 21 19 18 23 23 C 1.50699 * 125.89549 * 179.97438 * 22 21 19 24 24 F 1.39905 * 109.47221 * 30.39613 * 23 22 21 25 25 F 1.39905 * 109.46991 * 150.39464 * 23 22 21 26 26 H 1.08998 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46582 * 299.99843 * 1 2 3 28 28 H 1.09002 * 109.47366 * 59.99180 * 1 2 3 29 29 H 1.08995 * 109.47132 * 270.00668 * 3 2 1 30 30 H 1.09004 * 109.46558 * 30.00974 * 3 2 1 31 31 H 1.09003 * 109.47063 * 149.99816 * 3 2 1 32 32 H 0.97005 * 119.99612 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47517 * 216.48533 * 16 7 4 34 34 H 1.09006 * 109.47384 * 336.48982 * 16 7 4 35 35 H 1.07993 * 126.12872 * 0.02746 * 18 17 16 36 36 H 1.08999 * 109.46754 * 270.25968 * 20 19 18 37 37 H 1.09000 * 109.46746 * 30.25565 * 20 19 18 38 38 H 1.08993 * 109.47294 * 150.26059 * 20 19 18 39 39 H 1.08998 * 109.47497 * 270.39709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 -0.0006 5 8 1.4113 -2.4067 0.5434 6 8 3.5759 -1.1571 0.5438 7 7 2.5380 -1.8580 -1.5826 8 6 3.6140 -1.3584 -2.2666 9 1 3.9333 -0.3400 -2.1013 10 6 4.2942 -2.1609 -3.1722 11 7 4.2152 -3.4714 -3.0791 12 14 5.3217 -1.3808 -4.5232 13 1 5.2460 0.0980 -4.4113 14 1 6.7345 -1.8164 -4.3846 15 1 4.8010 -1.8039 -5.8480 16 6 1.6036 -2.7675 -2.2504 17 6 0.5931 -1.9661 -3.0301 18 6 0.5986 -0.6231 -3.1954 19 7 -0.4677 -0.2980 -3.9561 20 6 -0.8425 1.0524 -4.3827 21 7 -1.1561 -1.4794 -4.2610 22 6 -0.5193 -2.4785 -3.7055 23 6 -0.9164 -3.9303 -3.7801 24 9 -1.5717 -4.1728 -4.9922 25 9 0.2277 -4.7314 -3.7001 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.3791 1.5834 -1.0276 30 1 1.6085 2.0283 0.5140 31 1 3.1500 1.1383 0.5139 32 1 4.6908 -4.0321 -3.7118 33 1 2.1534 -3.4187 -2.9300 34 1 1.0893 -3.3728 -1.5038 35 1 1.3272 0.0650 -2.7931 36 1 -1.5029 1.4982 -3.6390 37 1 0.0545 1.6631 -4.4848 38 1 -1.3579 1.0005 -5.3417 39 1 -1.5846 -4.1673 -2.9522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329944874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:15 Heat of formation + Delta-G solvation = -72.895943 kcal Electronic energy + Delta-G solvation = -29873.225592 eV Core-core repulsion = 25423.563710 eV Total energy + Delta-G solvation = -4449.661882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.101 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -48.62410 -46.64748 -40.91346 -36.22192 -35.78556 -35.58365 -34.70208 -33.41113 -31.60334 -29.74786 -28.42266 -27.72532 -26.26276 -24.56982 -24.12161 -23.18367 -20.40261 -19.81850 -18.50850 -17.69482 -17.22084 -16.89581 -16.62301 -16.51176 -16.22517 -15.53671 -15.34975 -15.18167 -14.69370 -14.13885 -13.96560 -13.56484 -13.30435 -13.21572 -13.01783 -12.91965 -12.69525 -12.52777 -12.38595 -12.27336 -12.18526 -11.92534 -11.68093 -11.45123 -11.18229 -11.14098 -10.93340 -10.89434 -10.87600 -10.78134 -10.60833 -10.31269 -10.14032 -9.15275 -9.11736 -8.59954 -7.93997 -7.69206 -6.25871 -4.00136 1.62359 2.06785 2.61140 3.00079 3.19190 3.27177 3.29239 3.87798 4.03433 4.24719 4.39431 4.57902 4.75877 4.98811 5.03022 5.15026 5.18794 5.29052 5.32750 5.37963 5.46456 5.63242 5.72252 5.88111 5.91005 5.99114 6.07303 6.12259 6.26765 6.37662 6.50034 6.75555 7.03103 7.19926 7.30844 7.41731 7.75839 7.87357 8.38964 9.02291 9.38027 10.77055 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.006980 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.465954 B = 4010.475417 C = 4875.577221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.017 6.017 3 C 0.094 3.906 4 S 2.738 3.262 5 O -1.013 7.013 6 O -0.986 6.986 7 N -0.846 5.846 8 C -0.303 4.303 9 H 0.087 0.913 10 C 0.050 3.950 11 N -0.850 5.850 12 Si 0.908 3.092 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.186 3.814 17 C -0.197 4.197 18 C 0.073 3.927 19 N -0.375 5.375 20 C 0.105 3.895 21 N -0.271 5.271 22 C -0.009 4.009 23 C 0.359 3.641 24 F -0.199 7.199 25 F -0.181 7.181 26 H 0.079 0.921 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.268 0.732 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.182 0.818 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 8.038 -0.888 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.856 5.856 3 C -0.053 4.053 4 S 2.754 3.246 5 O -0.996 6.996 6 O -0.969 6.969 7 N -0.679 5.679 8 C -0.437 4.437 9 H 0.105 0.895 10 C -0.158 4.158 11 N -0.488 5.488 12 Si 0.735 3.265 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.058 3.942 17 C -0.210 4.210 18 C -0.071 4.071 19 N -0.159 5.159 20 C -0.036 4.036 21 N -0.096 5.096 22 C -0.176 4.176 23 C 0.303 3.697 24 F -0.180 7.180 25 F -0.162 7.162 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.199 0.801 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.777 7.916 -0.838 13.398 hybrid contribution 1.137 0.510 -0.777 1.469 sum -9.640 8.426 -1.615 12.905 Atomic orbital electron populations 1.21322 0.79876 1.03125 1.00410 1.57973 1.14367 1.22649 1.90562 1.21383 0.96998 0.85465 1.01406 1.03980 0.72541 0.72849 0.75202 1.93437 1.68383 1.58483 1.79306 1.93466 1.40173 1.84939 1.78368 1.52838 1.31501 1.58352 1.25197 1.18870 1.07143 0.96091 1.21610 0.89531 1.25302 0.95884 0.94804 0.99847 1.69947 1.40422 1.03272 1.35167 0.86198 0.79616 0.79493 0.81239 1.19409 1.20748 1.20790 1.19790 0.87179 0.91012 0.96252 1.20840 0.98986 0.93744 1.07461 1.22413 0.91477 0.97127 0.96074 1.48369 1.20766 1.06023 1.40791 1.21796 1.02119 0.78235 1.01472 1.77127 1.19987 0.90036 1.22428 1.22535 0.97752 0.95021 1.02253 1.19397 0.81598 0.83554 0.85113 1.92992 1.81163 1.95019 1.48837 1.93085 1.52513 1.74159 1.96433 0.90192 0.93137 0.93472 0.93258 0.92109 0.90269 0.92178 0.85484 0.91133 0.80125 0.91033 0.89465 0.89613 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.40 10.30 59.84 0.62 2.01 16 2 N -1.02 -17.04 3.64 -129.20 -0.47 -17.51 16 3 C 0.09 1.31 10.70 59.85 0.64 1.95 16 4 S 2.74 60.53 6.06 -107.50 -0.65 59.88 16 5 O -1.01 -23.91 15.16 -57.17 -0.87 -24.78 16 6 O -0.99 -24.81 16.04 -57.17 -0.92 -25.73 16 7 N -0.85 -19.44 2.26 -61.08 -0.14 -19.58 16 8 C -0.30 -7.33 8.10 -15.06 -0.12 -7.45 16 9 H 0.09 2.00 7.92 -52.49 -0.42 1.59 16 10 C 0.05 1.26 5.00 -17.43 -0.09 1.17 16 11 N -0.85 -22.52 11.43 55.49 0.63 -21.89 16 12 Si 0.91 19.68 29.61 -169.99 -5.03 14.64 16 13 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.19 4.13 4.60 -5.19 -0.02 4.11 16 17 C -0.20 -3.83 6.00 -105.05 -0.63 -4.46 16 18 C 0.07 1.26 9.54 -17.22 -0.16 1.09 16 19 N -0.38 -5.75 4.01 -68.17 -0.27 -6.02 16 20 C 0.11 1.04 11.47 59.84 0.69 1.73 16 21 N -0.27 -4.72 12.51 33.67 0.42 -4.30 16 22 C -0.01 -0.16 6.85 -82.40 -0.56 -0.72 16 23 C 0.36 5.71 5.79 36.00 0.21 5.92 16 24 F -0.20 -3.27 17.27 2.25 0.04 -3.23 16 25 F -0.18 -3.29 15.53 2.25 0.03 -3.26 16 26 H 0.08 1.25 6.91 -51.93 -0.36 0.89 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.58 7.51 -51.93 -0.39 0.19 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.66 8.07 -51.93 -0.42 0.24 16 31 H 0.08 1.22 7.02 -51.93 -0.36 0.85 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.13 3.16 5.05 -51.93 -0.26 2.90 16 34 H 0.07 1.56 6.85 -51.93 -0.36 1.20 16 35 H 0.18 3.00 7.35 -52.49 -0.39 2.61 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.13 1.50 8.14 -51.93 -0.42 1.07 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -32.77 347.03 -6.05 -38.82 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.62 Total: 2.36 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 0.56 Total: 5.35 kcal Atomic # 7 Polarization: -69.47 SS G_CDS: 0.17 Total: -69.30 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -1.78 Total: -50.50 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.07 Total: -6.48 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: 60.53 SS G_CDS: -0.65 Total: 59.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.77 -6.05 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329944874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.075 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds