Wall clock time and date at job start Tue Mar 31 2020 21:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 120.00356 * 2 1 4 4 S 1.65604 * 119.99979 * 180.02562 * 2 1 3 5 5 O 1.42097 * 106.40013 * 336.45812 * 4 2 1 6 6 O 1.42100 * 106.40461 * 203.53634 * 4 2 1 7 7 N 1.65597 * 107.21817 * 89.99906 * 4 2 1 8 8 C 1.36939 * 120.00345 * 85.08249 * 7 4 2 9 9 H 1.07994 * 119.99467 * 322.33872 * 8 7 4 10 10 C 1.38811 * 119.99691 * 142.34284 * 8 7 4 11 11 N 1.31618 * 120.00324 * 338.08040 * 10 8 7 12 12 Si 1.86801 * 119.99652 * 158.08622 * 10 8 7 13 13 H 1.48502 * 109.47210 * 359.97438 * 12 10 8 14 14 H 1.48492 * 109.47555 * 119.99707 * 12 10 8 15 15 H 1.48501 * 109.47016 * 239.99769 * 12 10 8 16 16 C 1.46506 * 119.99869 * 265.08102 * 7 4 2 17 17 C 1.50706 * 109.47170 * 96.48515 * 16 7 4 18 18 C 1.35318 * 126.03580 * 5.30150 * 17 16 7 19 19 N 1.34954 * 107.74331 * 179.87388 * 18 17 16 20 20 C 1.46494 * 126.03926 * 180.15088 * 19 18 17 21 21 N 1.40089 * 107.92525 * 0.38973 * 19 18 17 22 22 C 1.30845 * 108.20262 * 359.75803 * 21 19 18 23 23 C 1.50699 * 125.89549 * 179.97438 * 22 21 19 24 24 F 1.39905 * 109.47221 * 30.39613 * 23 22 21 25 25 F 1.39905 * 109.46991 * 150.39464 * 23 22 21 26 26 H 1.08998 * 109.47534 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46582 * 299.99843 * 1 2 3 28 28 H 1.09002 * 109.47366 * 59.99180 * 1 2 3 29 29 H 1.08995 * 109.47132 * 270.00668 * 3 2 1 30 30 H 1.09004 * 109.46558 * 30.00974 * 3 2 1 31 31 H 1.09003 * 109.47063 * 149.99816 * 3 2 1 32 32 H 0.97005 * 119.99612 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47517 * 216.48533 * 16 7 4 34 34 H 1.09006 * 109.47384 * 336.48982 * 16 7 4 35 35 H 1.07993 * 126.12872 * 0.02746 * 18 17 16 36 36 H 1.08999 * 109.46754 * 270.25968 * 20 19 18 37 37 H 1.09000 * 109.46746 * 30.25565 * 20 19 18 38 38 H 1.08993 * 109.47294 * 150.26059 * 20 19 18 39 39 H 1.08998 * 109.47497 * 270.39709 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2929 -1.4342 -0.0006 5 8 1.4113 -2.4067 0.5434 6 8 3.5759 -1.1571 0.5438 7 7 2.5380 -1.8580 -1.5826 8 6 3.6140 -1.3584 -2.2666 9 1 3.9333 -0.3400 -2.1013 10 6 4.2942 -2.1609 -3.1722 11 7 4.2152 -3.4714 -3.0791 12 14 5.3217 -1.3808 -4.5232 13 1 5.2460 0.0980 -4.4113 14 1 6.7345 -1.8164 -4.3846 15 1 4.8010 -1.8039 -5.8480 16 6 1.6036 -2.7675 -2.2504 17 6 0.5931 -1.9661 -3.0301 18 6 0.5986 -0.6231 -3.1954 19 7 -0.4677 -0.2980 -3.9561 20 6 -0.8425 1.0524 -4.3827 21 7 -1.1561 -1.4794 -4.2610 22 6 -0.5193 -2.4785 -3.7055 23 6 -0.9164 -3.9303 -3.7801 24 9 -1.5717 -4.1728 -4.9922 25 9 0.2277 -4.7314 -3.7001 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.3791 1.5834 -1.0276 30 1 1.6085 2.0283 0.5140 31 1 3.1500 1.1383 0.5139 32 1 4.6908 -4.0321 -3.7118 33 1 2.1534 -3.4187 -2.9300 34 1 1.0893 -3.3728 -1.5038 35 1 1.3272 0.0650 -2.7931 36 1 -1.5029 1.4982 -3.6390 37 1 0.0545 1.6631 -4.4848 38 1 -1.3579 1.0005 -5.3417 39 1 -1.5846 -4.1673 -2.9522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329944874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:14 Heat of formation + Delta-G solvation = -96.502830 kcal Electronic energy + Delta-G solvation = -29874.249263 eV Core-core repulsion = 25423.563710 eV Total energy + Delta-G solvation = -4450.685554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.101 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.93139 -47.96969 -42.21940 -38.04954 -37.50996 -36.88471 -36.53722 -34.61310 -33.38363 -31.23246 -29.54710 -28.85484 -27.80441 -26.07511 -25.38739 -24.67422 -21.73414 -21.15274 -20.25496 -19.26948 -18.49977 -18.39199 -18.17611 -17.93143 -17.75058 -16.90883 -16.74915 -16.39403 -16.30627 -15.53878 -15.39062 -14.98338 -14.80639 -14.54950 -14.35122 -14.28035 -13.93589 -13.79567 -13.73480 -13.49936 -13.42215 -13.25648 -13.17087 -13.09565 -12.98463 -12.75274 -12.57970 -12.45240 -12.43646 -12.31082 -12.21512 -11.95991 -11.68091 -10.94789 -10.35185 -9.90320 -9.63740 -9.20897 -8.12193 -5.90454 -0.05508 0.77474 1.46652 1.50388 1.50692 1.59193 1.60190 2.30094 2.53328 2.81233 2.85222 3.16437 3.21130 3.53215 3.71049 3.97129 4.04701 4.09407 4.17962 4.48950 4.52604 4.55884 4.61842 4.66624 4.72054 4.78758 4.83087 4.91799 4.94893 5.03045 5.13126 5.34878 5.50276 5.57612 5.77114 5.97154 6.12909 6.49334 6.59341 7.18303 7.51487 8.90084 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.006980 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.465954 B = 4010.475417 C = 4875.577221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.009 6.009 3 C 0.086 3.914 4 S 2.749 3.251 5 O -1.035 7.035 6 O -1.023 7.023 7 N -0.855 5.855 8 C -0.304 4.304 9 H 0.098 0.902 10 C 0.003 3.997 11 N -0.889 5.889 12 Si 0.963 3.037 13 H -0.247 1.247 14 H -0.289 1.289 15 H -0.289 1.289 16 C 0.196 3.804 17 C -0.226 4.226 18 C 0.084 3.916 19 N -0.364 5.364 20 C 0.091 3.909 21 N -0.280 5.280 22 C -0.020 4.020 23 C 0.353 3.647 24 F -0.203 7.203 25 F -0.199 7.199 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.264 0.736 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.190 0.810 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.537 11.231 -1.307 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.851 5.851 3 C -0.059 4.059 4 S 2.765 3.235 5 O -1.019 7.019 6 O -1.007 7.007 7 N -0.687 5.687 8 C -0.438 4.438 9 H 0.115 0.885 10 C -0.202 4.202 11 N -0.529 5.529 12 Si 0.788 3.212 13 H -0.170 1.170 14 H -0.215 1.215 15 H -0.216 1.216 16 C 0.067 3.933 17 C -0.239 4.239 18 C -0.062 4.062 19 N -0.148 5.148 20 C -0.048 4.048 21 N -0.105 5.105 22 C -0.186 4.186 23 C 0.298 3.702 24 F -0.184 7.184 25 F -0.181 7.181 26 H 0.079 0.921 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.207 0.793 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.257 11.137 -1.275 16.610 hybrid contribution 1.494 -0.359 -0.587 1.645 sum -10.763 10.778 -1.862 15.345 Atomic orbital electron populations 1.21537 0.77783 1.02725 1.02996 1.57522 1.15509 1.21808 1.90275 1.21644 0.96641 0.84700 1.02880 1.03283 0.71930 0.73599 0.74681 1.93401 1.68544 1.60297 1.79622 1.93415 1.42478 1.85735 1.79043 1.52902 1.31692 1.58679 1.25456 1.19172 1.06925 0.96433 1.21268 0.88459 1.26067 0.97223 0.95077 1.01863 1.70079 1.42062 1.04596 1.36124 0.85330 0.77575 0.79951 0.78303 1.17002 1.21513 1.21572 1.19441 0.87292 0.91045 0.95518 1.20582 0.99458 0.94765 1.09091 1.22415 0.91770 0.96368 0.95610 1.48779 1.19544 1.07188 1.39247 1.22308 1.03981 0.75693 1.02786 1.77089 1.20408 0.90602 1.22419 1.22719 0.97572 0.96026 1.02304 1.19870 0.81580 0.82690 0.86070 1.92974 1.81060 1.94969 1.49380 1.93049 1.53834 1.74637 1.96533 0.92144 0.90251 0.91071 0.91622 0.88088 0.92160 0.92597 0.88559 0.92376 0.79306 0.88303 0.87213 0.88639 0.81634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.38 10.30 127.77 1.32 3.69 16 2 N -1.01 -31.55 3.64 -562.68 -2.05 -33.60 16 3 C 0.09 2.13 10.70 127.77 1.37 3.50 16 4 S 2.75 121.55 6.06 -56.49 -0.34 121.21 16 5 O -1.04 -49.60 15.16 -128.00 -1.94 -51.54 16 6 O -1.02 -51.99 16.04 -128.00 -2.05 -54.05 16 7 N -0.85 -39.62 2.26 -347.15 -0.79 -40.41 16 8 C -0.30 -14.71 8.10 84.03 0.68 -14.03 16 9 H 0.10 4.39 7.92 -2.91 -0.02 4.37 16 10 C 0.00 0.13 5.00 84.86 0.42 0.55 16 11 N -0.89 -48.83 11.43 21.65 0.25 -48.58 16 12 Si 0.96 40.35 29.61 68.60 2.03 42.38 16 13 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 14 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 16 C 0.20 8.92 4.60 85.63 0.39 9.31 16 17 C -0.23 -8.67 6.00 -20.14 -0.12 -8.79 16 18 C 0.08 2.72 9.54 83.54 0.80 3.52 16 19 N -0.36 -10.06 4.01 -369.59 -1.48 -11.54 16 20 C 0.09 1.41 11.47 127.77 1.47 2.87 16 21 N -0.28 -9.20 12.51 -47.39 -0.59 -9.79 16 22 C -0.02 -0.71 6.85 43.10 0.30 -0.42 16 23 C 0.35 11.16 5.79 71.24 0.41 11.57 16 24 F -0.20 -6.56 17.27 44.97 0.78 -5.78 16 25 F -0.20 -7.52 15.53 44.97 0.70 -6.82 16 26 H 0.06 1.79 6.91 -2.39 -0.02 1.77 16 27 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.07 1.45 7.51 -2.39 -0.02 1.44 16 29 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.71 8.07 -2.39 -0.02 1.69 16 31 H 0.06 1.74 7.02 -2.39 -0.02 1.73 16 32 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 33 H 0.10 5.03 5.05 -2.39 -0.01 5.02 16 34 H 0.06 2.69 6.85 -2.38 -0.02 2.67 16 35 H 0.19 5.73 7.35 -2.91 -0.02 5.71 16 36 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.17 3.80 8.14 -2.39 -0.02 3.78 16 Total: -1.00 -73.38 347.03 2.63 -70.75 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 1.09 Total: 15.99 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: 7.03 Total: 11.78 kcal Atomic # 7 Polarization: -139.26 SS G_CDS: -4.66 Total: -143.92 kcal Atomic # 8 Polarization: -101.59 SS G_CDS: -3.99 Total: -105.59 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 1.48 Total: -12.60 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Atomic # 16 Polarization: 121.55 SS G_CDS: -0.34 Total: 121.21 kcal Total: -73.38 2.63 -70.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329944874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.754 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds