Wall clock time and date at job start Tue Mar 31 2020 21:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40061 * 125.95147 * 2 1 4 4 C 1.31879 * 108.22902 * 180.02562 * 3 2 1 5 5 C 1.47678 * 125.98265 * 180.02562 * 4 3 2 6 6 O 1.21574 * 119.99832 * 180.02562 * 5 4 3 7 7 N 1.34770 * 119.99990 * 0.02562 * 5 4 3 8 8 C 1.39176 * 119.99799 * 183.41078 * 7 5 4 9 9 C 1.39693 * 119.57693 * 339.02120 * 8 7 5 10 10 C 1.38648 * 119.49082 * 180.02562 * 9 8 7 11 11 C 1.38346 * 118.67527 * 0.02562 * 10 9 8 12 12 C 1.40574 * 119.13586 * 359.97438 * 11 10 9 13 13 C 1.41330 * 119.79071 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99944 * 5.18689 * 13 12 11 15 15 C 1.40028 * 120.00107 * 185.18563 * 13 12 11 16 16 N 1.30742 * 119.99707 * 184.75054 * 15 13 12 17 17 Si 1.86798 * 120.00057 * 4.74617 * 15 13 12 18 18 H 1.48505 * 109.47190 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47263 * 300.00227 * 17 15 13 20 20 H 1.48503 * 109.46911 * 60.00716 * 17 15 13 21 21 N 1.31927 * 119.57632 * 159.30060 * 8 7 5 22 22 C 1.41075 * 108.03146 * 0.26287 * 4 3 2 23 23 C 1.35583 * 107.79977 * 359.56430 * 22 4 3 24 24 O 1.35771 * 126.08431 * 180.12017 * 23 22 4 25 25 C 1.42901 * 116.99964 * 4.48973 * 24 23 22 26 26 F 1.39900 * 109.46921 * 303.65708 * 25 24 23 27 27 F 1.39902 * 109.47285 * 63.65476 * 25 24 23 28 28 H 1.08998 * 109.47417 * 95.05831 * 1 2 3 29 29 H 1.09003 * 109.47361 * 215.06048 * 1 2 3 30 30 H 1.09003 * 109.46879 * 335.05728 * 1 2 3 31 31 H 0.97005 * 119.99962 * 3.40556 * 7 5 4 32 32 H 1.08001 * 120.25514 * 359.97438 * 9 8 7 33 33 H 1.08006 * 120.65919 * 179.97438 * 10 9 8 34 34 H 1.08007 * 120.43565 * 180.02562 * 11 10 9 35 35 H 0.97003 * 120.00307 * 354.98330 * 16 15 13 36 36 H 1.08006 * 126.09807 * 179.70104 * 22 4 3 37 37 H 1.08998 * 109.47377 * 183.65412 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2873 1.1338 0.0000 4 6 3.5435 0.7324 -0.0006 5 6 4.7337 1.6065 -0.0002 6 8 5.8469 1.1177 -0.0013 7 7 4.5860 2.9461 0.0013 8 6 5.7056 3.7697 -0.0701 9 6 6.9566 3.2658 0.2936 10 6 8.0707 4.0881 0.2223 11 6 7.9068 5.3921 -0.2097 12 6 6.6217 5.8400 -0.5618 13 6 6.4385 7.1693 -1.0054 14 1 7.2938 7.8119 -1.1533 15 6 5.1481 7.6532 -1.2533 16 7 4.9835 8.8506 -1.7518 17 14 3.6618 6.5878 -0.8719 18 1 2.4213 7.3249 -1.2227 19 1 3.7339 5.3350 -1.6660 20 1 3.6487 6.2564 0.5756 21 7 5.5709 5.0180 -0.4752 22 6 3.5511 -0.6783 -0.0071 23 6 2.2624 -1.0998 -0.0006 24 8 1.8435 -2.3913 -0.0014 25 6 2.8512 -3.4003 0.0897 26 9 3.7712 -3.2358 -0.9514 27 9 3.5122 -3.2898 1.3178 28 1 -0.3634 -0.0906 -1.0236 29 1 -0.3634 -0.8412 0.5903 30 1 -0.3633 0.9319 0.4334 31 1 3.6993 3.3362 0.0520 32 1 7.0551 2.2438 0.6286 33 1 9.0469 3.7181 0.4994 34 1 8.7552 6.0570 -0.2765 35 1 5.7495 9.4313 -1.8819 36 1 4.4272 -1.3099 -0.0137 37 1 2.3883 -4.3841 0.0134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361604459.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:26 Heat of formation + Delta-G solvation = -79.065934 kcal Electronic energy + Delta-G solvation = -28454.358357 eV Core-core repulsion = 23868.984973 eV Total energy + Delta-G solvation = -4585.373384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.27384 -48.35478 -42.83474 -41.61023 -39.92231 -39.27152 -36.39708 -35.46315 -34.55245 -33.02561 -31.66168 -30.85969 -28.51953 -27.43076 -27.10152 -25.26154 -23.68737 -23.10024 -22.50981 -21.41290 -20.49575 -19.89304 -19.26510 -19.00393 -18.58109 -17.88958 -17.50096 -17.30552 -16.98905 -16.65985 -16.27466 -16.03687 -15.65339 -15.51426 -15.24119 -15.12952 -14.79285 -14.73300 -14.69655 -14.53377 -14.26269 -13.86614 -13.75653 -13.50630 -13.48197 -13.10974 -13.02972 -12.78556 -12.31978 -12.24009 -11.81913 -11.67749 -11.19489 -11.02440 -10.49788 -10.44680 -9.88815 -9.72915 -9.40347 -9.21662 -6.83611 -0.15686 0.42529 0.55720 0.70841 0.89988 1.44861 1.56621 1.68105 1.90788 2.01869 2.04920 2.44119 2.52130 2.64784 2.92584 3.38637 3.52069 3.61023 3.65537 3.93925 4.06124 4.14753 4.32489 4.38438 4.39506 4.60061 4.67101 4.67613 4.71030 4.83535 4.97591 5.29540 5.35494 5.39081 5.65079 5.71072 5.77827 5.87895 6.04071 6.23470 6.36807 6.60922 6.78055 7.45166 7.94164 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.003100 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.023618 B = 9029.291010 C =10357.788639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.339 5.339 3 N -0.250 5.250 4 C 0.041 3.959 5 C 0.606 3.394 6 O -0.516 6.516 7 N -0.639 5.639 8 C 0.371 3.629 9 C -0.306 4.306 10 C -0.025 4.025 11 C -0.284 4.284 12 C 0.256 3.744 13 C -0.505 4.505 14 H 0.073 0.927 15 C 0.017 3.983 16 N -0.827 5.827 17 Si 1.181 2.819 18 H -0.327 1.327 19 H -0.281 1.281 20 H -0.292 1.292 21 N -0.612 5.612 22 C -0.277 4.277 23 C 0.274 3.726 24 O -0.304 6.304 25 C 0.419 3.581 26 F -0.206 7.206 27 F -0.206 7.206 28 H 0.100 0.900 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.419 0.581 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.282 0.718 36 H 0.164 0.836 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.296 -27.125 4.666 30.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.132 5.132 3 N -0.082 5.082 4 C -0.124 4.124 5 C 0.392 3.608 6 O -0.389 6.389 7 N -0.284 5.284 8 C 0.140 3.860 9 C -0.331 4.331 10 C -0.049 4.049 11 C -0.307 4.307 12 C 0.131 3.869 13 C -0.538 4.538 14 H 0.091 0.909 15 C -0.200 4.200 16 N -0.451 5.451 17 Si 1.015 2.985 18 H -0.260 1.260 19 H -0.210 1.210 20 H -0.221 1.221 21 N -0.338 5.338 22 C -0.308 4.308 23 C 0.104 3.896 24 O -0.216 6.216 25 C 0.330 3.670 26 F -0.188 7.188 27 F -0.188 7.188 28 H 0.118 0.882 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.256 0.744 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.093 0.907 36 H 0.182 0.818 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -14.895 -26.295 4.278 30.522 hybrid contribution 3.298 0.146 0.106 3.303 sum -11.597 -26.149 4.384 28.939 Atomic orbital electron populations 1.22549 0.69720 1.07144 1.05929 1.49013 1.08489 0.99800 1.55939 1.77843 1.00388 1.06109 1.23878 1.21295 0.91449 0.94060 1.05573 1.17093 0.87390 0.80478 0.75835 1.90664 1.24814 1.74739 1.48692 1.43088 1.09628 1.05472 1.70168 1.18386 0.86638 0.88035 0.92896 1.22076 0.91487 1.03732 1.15756 1.21383 0.98731 0.92029 0.92798 1.21825 0.97287 0.97922 1.13616 1.18493 0.88005 0.91984 0.88399 1.20725 0.95966 0.96249 1.40833 0.90891 1.28438 1.05246 0.97533 0.88784 1.70659 1.36763 1.08150 1.29494 0.81491 0.68300 0.71434 0.77321 1.26022 1.20953 1.22065 1.65960 1.34035 1.05114 1.28676 1.21198 0.96399 0.93670 1.19490 1.18525 0.88792 0.82167 1.00147 1.86422 1.37002 1.09912 1.88306 1.24692 0.77704 0.93456 0.71118 1.93126 1.69878 1.96148 1.59644 1.93130 1.82938 1.96597 1.46146 0.88208 0.86274 0.87261 0.74420 0.82704 0.83272 0.86209 0.90692 0.81848 0.72689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 11.42 127.77 1.46 2.28 16 2 N -0.34 -7.06 4.04 -480.56 -1.94 -9.00 16 3 N -0.25 -7.13 12.26 -48.44 -0.59 -7.72 16 4 C 0.04 1.31 7.09 42.33 0.30 1.61 16 5 C 0.61 22.99 7.72 86.74 0.67 23.66 16 6 O -0.52 -21.28 13.56 -3.95 -0.05 -21.34 16 7 N -0.64 -26.22 5.41 -311.12 -1.68 -27.90 16 8 C 0.37 17.61 7.51 133.28 1.00 18.61 16 9 C -0.31 -13.71 8.89 22.72 0.20 -13.51 16 10 C -0.03 -1.07 10.15 22.39 0.23 -0.84 16 11 C -0.28 -13.51 9.83 22.87 0.22 -13.28 16 12 C 0.26 13.83 6.40 40.19 0.26 14.09 16 13 C -0.50 -28.67 9.57 23.47 0.22 -28.44 16 14 H 0.07 4.16 8.05 -2.91 -0.02 4.13 16 15 C 0.02 0.96 5.52 85.29 0.47 1.44 16 16 N -0.83 -46.78 13.65 21.84 0.30 -46.48 16 17 Si 1.18 58.92 25.61 68.60 1.76 60.67 16 18 H -0.33 -15.80 7.11 99.48 0.71 -15.10 16 19 H -0.28 -14.01 6.61 99.48 0.66 -13.36 16 20 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 21 N -0.61 -32.09 4.54 -186.41 -0.85 -32.94 16 22 C -0.28 -7.48 8.85 22.35 0.20 -7.28 16 23 C 0.27 5.74 7.48 83.46 0.62 6.36 16 24 O -0.30 -3.91 10.43 -90.99 -0.95 -4.86 16 25 C 0.42 3.52 6.00 113.37 0.68 4.20 16 26 F -0.21 -3.09 15.51 44.97 0.70 -2.39 16 27 F -0.21 -2.94 16.69 44.97 0.75 -2.19 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.42 16.09 8.52 -92.70 -0.79 15.30 16 32 H 0.16 6.69 5.18 -9.28 -0.05 6.65 16 33 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16 34 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 35 H 0.28 15.37 8.72 -92.71 -0.81 14.56 16 36 H 0.16 4.42 6.58 -2.91 -0.02 4.40 16 37 H 0.26 -1.35 8.14 -2.39 -0.02 -1.37 16 Total: -1.00 -75.61 334.66 4.23 -71.38 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.26 Total: 13.89 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 6.54 Total: 8.89 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -4.76 Total: -124.04 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -1.00 Total: -26.20 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 1.45 Total: -4.58 kcal Atomic # 14 Polarization: 58.92 SS G_CDS: 1.76 Total: 60.67 kcal Total: -75.61 4.23 -71.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361604459.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.686 kcal (2) G-P(sol) polarization free energy of solvation -75.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds