Wall clock time and date at job start Tue Mar 31 2020 21:18:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.40061 * 125.95147 * 2 1
4 4 C 1.31879 * 108.22902 * 180.02562 * 3 2 1
5 5 C 1.47678 * 125.98265 * 180.02562 * 4 3 2
6 6 O 1.21574 * 119.99832 * 180.02562 * 5 4 3
7 7 N 1.34770 * 119.99990 * 0.02562 * 5 4 3
8 8 C 1.39176 * 119.99799 * 183.41078 * 7 5 4
9 9 C 1.39693 * 119.57693 * 339.02120 * 8 7 5
10 10 C 1.38648 * 119.49082 * 180.02562 * 9 8 7
11 11 C 1.38346 * 118.67527 * 0.02562 * 10 9 8
12 12 C 1.40574 * 119.13586 * 359.97438 * 11 10 9
13 13 C 1.41330 * 119.79071 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99944 * 5.18689 * 13 12 11
15 15 C 1.40028 * 120.00107 * 185.18563 * 13 12 11
16 16 N 1.30742 * 119.99707 * 184.75054 * 15 13 12
17 17 Si 1.86798 * 120.00057 * 4.74617 * 15 13 12
18 18 H 1.48505 * 109.47190 * 180.02562 * 17 15 13
19 19 H 1.48500 * 109.47263 * 300.00227 * 17 15 13
20 20 H 1.48503 * 109.46911 * 60.00716 * 17 15 13
21 21 N 1.31927 * 119.57632 * 159.30060 * 8 7 5
22 22 C 1.41075 * 108.03146 * 0.26287 * 4 3 2
23 23 C 1.35583 * 107.79977 * 359.56430 * 22 4 3
24 24 O 1.35771 * 126.08431 * 180.12017 * 23 22 4
25 25 C 1.42901 * 116.99964 * 4.48973 * 24 23 22
26 26 F 1.39900 * 109.46921 * 303.65708 * 25 24 23
27 27 F 1.39902 * 109.47285 * 63.65476 * 25 24 23
28 28 H 1.08998 * 109.47417 * 95.05831 * 1 2 3
29 29 H 1.09003 * 109.47361 * 215.06048 * 1 2 3
30 30 H 1.09003 * 109.46879 * 335.05728 * 1 2 3
31 31 H 0.97005 * 119.99962 * 3.40556 * 7 5 4
32 32 H 1.08001 * 120.25514 * 359.97438 * 9 8 7
33 33 H 1.08006 * 120.65919 * 179.97438 * 10 9 8
34 34 H 1.08007 * 120.43565 * 180.02562 * 11 10 9
35 35 H 0.97003 * 120.00307 * 354.98330 * 16 15 13
36 36 H 1.08006 * 126.09807 * 179.70104 * 22 4 3
37 37 H 1.08998 * 109.47377 * 183.65412 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2873 1.1338 0.0000
4 6 3.5435 0.7324 -0.0006
5 6 4.7337 1.6065 -0.0002
6 8 5.8469 1.1177 -0.0013
7 7 4.5860 2.9461 0.0013
8 6 5.7056 3.7697 -0.0701
9 6 6.9566 3.2658 0.2936
10 6 8.0707 4.0881 0.2223
11 6 7.9068 5.3921 -0.2097
12 6 6.6217 5.8400 -0.5618
13 6 6.4385 7.1693 -1.0054
14 1 7.2938 7.8119 -1.1533
15 6 5.1481 7.6532 -1.2533
16 7 4.9835 8.8506 -1.7518
17 14 3.6618 6.5878 -0.8719
18 1 2.4213 7.3249 -1.2227
19 1 3.7339 5.3350 -1.6660
20 1 3.6487 6.2564 0.5756
21 7 5.5709 5.0180 -0.4752
22 6 3.5511 -0.6783 -0.0071
23 6 2.2624 -1.0998 -0.0006
24 8 1.8435 -2.3913 -0.0014
25 6 2.8512 -3.4003 0.0897
26 9 3.7712 -3.2358 -0.9514
27 9 3.5122 -3.2898 1.3178
28 1 -0.3634 -0.0906 -1.0236
29 1 -0.3634 -0.8412 0.5903
30 1 -0.3633 0.9319 0.4334
31 1 3.6993 3.3362 0.0520
32 1 7.0551 2.2438 0.6286
33 1 9.0469 3.7181 0.4994
34 1 8.7552 6.0570 -0.2765
35 1 5.7495 9.4313 -1.8819
36 1 4.4272 -1.3099 -0.0137
37 1 2.3883 -4.3841 0.0134
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001361604459.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:18:26
Heat of formation + Delta-G solvation = -79.065934 kcal
Electronic energy + Delta-G solvation = -28454.358357 eV
Core-core repulsion = 23868.984973 eV
Total energy + Delta-G solvation = -4585.373384 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 338.098 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-50.27384 -48.35478 -42.83474 -41.61023 -39.92231 -39.27152 -36.39708 -35.46315
-34.55245 -33.02561 -31.66168 -30.85969 -28.51953 -27.43076 -27.10152 -25.26154
-23.68737 -23.10024 -22.50981 -21.41290 -20.49575 -19.89304 -19.26510 -19.00393
-18.58109 -17.88958 -17.50096 -17.30552 -16.98905 -16.65985 -16.27466 -16.03687
-15.65339 -15.51426 -15.24119 -15.12952 -14.79285 -14.73300 -14.69655 -14.53377
-14.26269 -13.86614 -13.75653 -13.50630 -13.48197 -13.10974 -13.02972 -12.78556
-12.31978 -12.24009 -11.81913 -11.67749 -11.19489 -11.02440 -10.49788 -10.44680
-9.88815 -9.72915 -9.40347 -9.21662 -6.83611 -0.15686 0.42529 0.55720
0.70841 0.89988 1.44861 1.56621 1.68105 1.90788 2.01869 2.04920
2.44119 2.52130 2.64784 2.92584 3.38637 3.52069 3.61023 3.65537
3.93925 4.06124 4.14753 4.32489 4.38438 4.39506 4.60061 4.67101
4.67613 4.71030 4.83535 4.97591 5.29540 5.35494 5.39081 5.65079
5.71072 5.77827 5.87895 6.04071 6.23470 6.36807 6.60922 6.78055
7.45166 7.94164
Molecular weight = 338.10amu
Principal moments of inertia in cm(-1)
A = 0.017672 B = 0.003100 C = 0.002703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1584.023618 B = 9029.291010 C =10357.788639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.339 5.339
3 N -0.250 5.250
4 C 0.041 3.959
5 C 0.606 3.394
6 O -0.516 6.516
7 N -0.639 5.639
8 C 0.371 3.629
9 C -0.306 4.306
10 C -0.025 4.025
11 C -0.284 4.284
12 C 0.256 3.744
13 C -0.505 4.505
14 H 0.073 0.927
15 C 0.017 3.983
16 N -0.827 5.827
17 Si 1.181 2.819
18 H -0.327 1.327
19 H -0.281 1.281
20 H -0.292 1.292
21 N -0.612 5.612
22 C -0.277 4.277
23 C 0.274 3.726
24 O -0.304 6.304
25 C 0.419 3.581
26 F -0.206 7.206
27 F -0.206 7.206
28 H 0.100 0.900
29 H 0.119 0.881
30 H 0.109 0.891
31 H 0.419 0.581
32 H 0.156 0.844
33 H 0.150 0.850
34 H 0.120 0.880
35 H 0.282 0.718
36 H 0.164 0.836
37 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.296 -27.125 4.666 30.145
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 N -0.132 5.132
3 N -0.082 5.082
4 C -0.124 4.124
5 C 0.392 3.608
6 O -0.389 6.389
7 N -0.284 5.284
8 C 0.140 3.860
9 C -0.331 4.331
10 C -0.049 4.049
11 C -0.307 4.307
12 C 0.131 3.869
13 C -0.538 4.538
14 H 0.091 0.909
15 C -0.200 4.200
16 N -0.451 5.451
17 Si 1.015 2.985
18 H -0.260 1.260
19 H -0.210 1.210
20 H -0.221 1.221
21 N -0.338 5.338
22 C -0.308 4.308
23 C 0.104 3.896
24 O -0.216 6.216
25 C 0.330 3.670
26 F -0.188 7.188
27 F -0.188 7.188
28 H 0.118 0.882
29 H 0.137 0.863
30 H 0.127 0.873
31 H 0.256 0.744
32 H 0.173 0.827
33 H 0.167 0.833
34 H 0.138 0.862
35 H 0.093 0.907
36 H 0.182 0.818
37 H 0.273 0.727
Dipole moment (debyes) X Y Z Total
from point charges -14.895 -26.295 4.278 30.522
hybrid contribution 3.298 0.146 0.106 3.303
sum -11.597 -26.149 4.384 28.939
Atomic orbital electron populations
1.22549 0.69720 1.07144 1.05929 1.49013 1.08489 0.99800 1.55939
1.77843 1.00388 1.06109 1.23878 1.21295 0.91449 0.94060 1.05573
1.17093 0.87390 0.80478 0.75835 1.90664 1.24814 1.74739 1.48692
1.43088 1.09628 1.05472 1.70168 1.18386 0.86638 0.88035 0.92896
1.22076 0.91487 1.03732 1.15756 1.21383 0.98731 0.92029 0.92798
1.21825 0.97287 0.97922 1.13616 1.18493 0.88005 0.91984 0.88399
1.20725 0.95966 0.96249 1.40833 0.90891 1.28438 1.05246 0.97533
0.88784 1.70659 1.36763 1.08150 1.29494 0.81491 0.68300 0.71434
0.77321 1.26022 1.20953 1.22065 1.65960 1.34035 1.05114 1.28676
1.21198 0.96399 0.93670 1.19490 1.18525 0.88792 0.82167 1.00147
1.86422 1.37002 1.09912 1.88306 1.24692 0.77704 0.93456 0.71118
1.93126 1.69878 1.96148 1.59644 1.93130 1.82938 1.96597 1.46146
0.88208 0.86274 0.87261 0.74420 0.82704 0.83272 0.86209 0.90692
0.81848 0.72689
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.82 11.42 127.77 1.46 2.28 16
2 N -0.34 -7.06 4.04 -480.56 -1.94 -9.00 16
3 N -0.25 -7.13 12.26 -48.44 -0.59 -7.72 16
4 C 0.04 1.31 7.09 42.33 0.30 1.61 16
5 C 0.61 22.99 7.72 86.74 0.67 23.66 16
6 O -0.52 -21.28 13.56 -3.95 -0.05 -21.34 16
7 N -0.64 -26.22 5.41 -311.12 -1.68 -27.90 16
8 C 0.37 17.61 7.51 133.28 1.00 18.61 16
9 C -0.31 -13.71 8.89 22.72 0.20 -13.51 16
10 C -0.03 -1.07 10.15 22.39 0.23 -0.84 16
11 C -0.28 -13.51 9.83 22.87 0.22 -13.28 16
12 C 0.26 13.83 6.40 40.19 0.26 14.09 16
13 C -0.50 -28.67 9.57 23.47 0.22 -28.44 16
14 H 0.07 4.16 8.05 -2.91 -0.02 4.13 16
15 C 0.02 0.96 5.52 85.29 0.47 1.44 16
16 N -0.83 -46.78 13.65 21.84 0.30 -46.48 16
17 Si 1.18 58.92 25.61 68.60 1.76 60.67 16
18 H -0.33 -15.80 7.11 99.48 0.71 -15.10 16
19 H -0.28 -14.01 6.61 99.48 0.66 -13.36 16
20 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16
21 N -0.61 -32.09 4.54 -186.41 -0.85 -32.94 16
22 C -0.28 -7.48 8.85 22.35 0.20 -7.28 16
23 C 0.27 5.74 7.48 83.46 0.62 6.36 16
24 O -0.30 -3.91 10.43 -90.99 -0.95 -4.86 16
25 C 0.42 3.52 6.00 113.37 0.68 4.20 16
26 F -0.21 -3.09 15.51 44.97 0.70 -2.39 16
27 F -0.21 -2.94 16.69 44.97 0.75 -2.19 16
28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16
30 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.42 16.09 8.52 -92.70 -0.79 15.30 16
32 H 0.16 6.69 5.18 -9.28 -0.05 6.65 16
33 H 0.15 5.03 8.06 -2.91 -0.02 5.01 16
34 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16
35 H 0.28 15.37 8.72 -92.71 -0.81 14.56 16
36 H 0.16 4.42 6.58 -2.91 -0.02 4.40 16
37 H 0.26 -1.35 8.14 -2.39 -0.02 -1.37 16
Total: -1.00 -75.61 334.66 4.23 -71.38
By element:
Atomic # 1 Polarization: 13.63 SS G_CDS: 0.26 Total: 13.89 kcal
Atomic # 6 Polarization: 2.35 SS G_CDS: 6.54 Total: 8.89 kcal
Atomic # 7 Polarization: -119.28 SS G_CDS: -4.76 Total: -124.04 kcal
Atomic # 8 Polarization: -25.20 SS G_CDS: -1.00 Total: -26.20 kcal
Atomic # 9 Polarization: -6.03 SS G_CDS: 1.45 Total: -4.58 kcal
Atomic # 14 Polarization: 58.92 SS G_CDS: 1.76 Total: 60.67 kcal
Total: -75.61 4.23 -71.38 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001361604459.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.686 kcal
(2) G-P(sol) polarization free energy of solvation -75.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.380 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds