Wall clock time and date at job start Tue Mar 31 2020 21:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86794 * 120.00425 * 2 1 4 4 H 1.48510 * 109.47155 * 274.98741 * 3 2 1 5 5 H 1.48496 * 109.47037 * 34.98484 * 3 2 1 6 6 H 1.48500 * 109.47484 * 154.98778 * 3 2 1 7 7 C 1.40031 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00671 * 173.72317 * 7 2 1 9 9 C 1.41345 * 119.99501 * 353.72550 * 7 2 1 10 10 C 1.40623 * 119.78535 * 186.46022 * 9 7 2 11 11 C 1.38299 * 119.12671 * 180.02562 * 10 9 7 12 12 C 1.38701 * 118.66961 * 0.02562 * 11 10 9 13 13 C 1.39625 * 119.49853 * 359.97438 * 12 11 10 14 14 N 1.39272 * 119.57706 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99540 * 341.11005 * 14 13 12 16 16 O 1.21269 * 120.00181 * 354.40411 * 15 14 13 17 17 C 1.50705 * 119.99368 * 174.40007 * 15 14 13 18 18 H 1.08998 * 109.52944 * 55.09442 * 17 15 14 19 19 C 1.52903 * 109.50267 * 294.99641 * 17 15 14 20 20 C 1.50589 * 110.32102 * 190.15664 * 19 17 15 21 21 C 1.38086 * 119.91736 * 201.28140 * 20 19 17 22 22 C 1.38316 * 120.14153 * 180.24441 * 21 20 19 23 23 C 1.38394 * 120.47073 * 0.05349 * 22 21 20 24 24 C 1.38029 * 120.04327 * 359.89914 * 23 22 21 25 25 C 1.39396 * 119.65230 * 0.23116 * 24 23 22 26 26 C 1.48135 * 120.38516 * 180.69530 * 25 24 23 27 27 O 1.21471 * 121.47892 * 9.01558 * 26 25 24 28 28 O 1.35749 * 117.07722 * 189.25002 * 26 25 24 29 29 N 1.31934 * 120.85273 * 0.25423 * 13 12 11 30 30 H 0.97007 * 119.99795 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.43131 * 0.04511 * 10 9 7 32 32 H 1.07998 * 120.66517 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.24888 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00289 * 161.10799 * 14 13 12 35 35 H 1.09004 * 109.32639 * 69.90038 * 19 17 15 36 36 H 1.08998 * 109.33432 * 310.42065 * 19 17 15 37 37 H 1.07996 * 119.92943 * 0.22063 * 21 20 19 38 38 H 1.08007 * 119.76746 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.97823 * 179.87526 * 23 22 21 40 40 H 1.07999 * 120.17007 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3836 2.1072 -1.3949 5 1 1.4956 2.6199 0.8027 6 1 3.5877 1.4119 0.5920 7 6 2.0075 -1.2127 -0.0005 8 1 3.0826 -1.2156 -0.1028 9 6 1.3070 -2.4331 0.1327 10 6 2.0208 -3.6371 0.2685 11 6 1.3217 -4.8233 0.3974 12 6 -0.0647 -4.7831 0.3876 13 6 -0.7159 -3.5557 0.2494 14 7 -2.1079 -3.5135 0.2388 15 6 -2.8140 -4.6317 -0.0211 16 8 -2.2401 -5.6497 -0.3451 17 6 -4.3168 -4.6169 0.0910 18 1 -4.7211 -3.8219 -0.5355 19 6 -4.7177 -4.3738 1.5464 20 6 -6.1956 -4.6000 1.7265 21 6 -6.8530 -4.0342 2.8009 22 6 -8.2094 -4.2431 2.9736 23 6 -8.9198 -5.0198 2.0751 24 6 -8.2764 -5.5911 0.9958 25 6 -6.9090 -5.3851 0.8199 26 6 -6.2052 -5.9778 -0.3410 27 8 -6.8136 -6.5135 -1.2457 28 8 -4.8500 -5.9004 -0.3473 29 7 -0.0296 -2.4361 0.1233 30 1 -0.4850 0.8401 0.0004 31 1 3.1008 -3.6352 0.2724 32 1 1.8447 -5.7622 0.5037 33 1 -0.6361 -5.6941 0.4869 34 1 -2.5693 -2.6793 0.4184 35 1 -4.4737 -3.3476 1.8212 36 1 -4.1667 -5.0580 2.1916 37 1 -6.3069 -3.4276 3.5081 38 1 -8.7176 -3.7973 3.8159 39 1 -9.9782 -5.1794 2.2188 40 1 -8.8288 -6.1979 0.2936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361737893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:45 Heat of formation + Delta-G solvation = -35.455270 kcal Electronic energy + Delta-G solvation = -27760.839299 eV Core-core repulsion = 23699.293794 eV Total energy + Delta-G solvation = -4061.545505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.36139 -39.90892 -38.73465 -38.01472 -37.10836 -34.54007 -33.68029 -33.21286 -31.60276 -30.62937 -30.41730 -28.93364 -25.87300 -25.18798 -24.64245 -22.41007 -22.14173 -21.69715 -20.43818 -19.86598 -18.50006 -17.87583 -17.46748 -16.91747 -16.63416 -16.04250 -15.66089 -15.44627 -15.06624 -14.86296 -14.71616 -14.45550 -14.39119 -14.07387 -13.79270 -13.44580 -13.36589 -12.93054 -12.67084 -12.42236 -12.31550 -12.13407 -12.03460 -11.60979 -11.33511 -11.21988 -11.05159 -10.85635 -10.75142 -10.42017 -10.19520 -9.97738 -9.48289 -9.31821 -9.22889 -9.08929 -8.14180 -7.79871 -7.24215 -6.51553 -4.58735 0.24585 0.86318 1.88658 2.24777 2.57028 2.80441 3.04287 3.07212 3.12028 3.21498 3.29154 3.39129 3.84056 3.89023 4.09369 4.15750 4.44147 4.53509 4.61336 4.68554 4.75256 4.85947 4.99545 5.08904 5.24283 5.43857 5.55066 5.79895 5.80079 5.86755 5.96856 6.07894 6.25877 6.38286 6.60679 6.66533 6.70737 6.74139 7.05667 7.16641 7.34343 7.38542 7.71212 7.78614 8.00475 8.17573 8.42902 8.61334 8.86307 9.92678 10.22222 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.002720 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.824142 B =10292.394101 C =11354.107777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.433 4.433 8 H 0.086 0.914 9 C 0.278 3.722 10 C -0.284 4.284 11 C -0.048 4.048 12 C -0.312 4.312 13 C 0.356 3.644 14 N -0.637 5.637 15 C 0.518 3.482 16 O -0.487 6.487 17 C 0.089 3.911 18 H 0.110 0.890 19 C -0.115 4.115 20 C -0.033 4.033 21 C -0.124 4.124 22 C -0.080 4.080 23 C -0.134 4.134 24 C -0.049 4.049 25 C -0.175 4.175 26 C 0.529 3.471 27 O -0.444 6.444 28 O -0.329 6.329 29 N -0.505 5.505 30 H 0.271 0.729 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.130 0.870 34 H 0.409 0.591 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 -2.179 7.345 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.153 4.153 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.152 3.848 10 C -0.307 4.307 11 C -0.073 4.073 12 C -0.337 4.337 13 C 0.122 3.878 14 N -0.284 5.284 15 C 0.301 3.699 16 O -0.359 6.359 17 C 0.030 3.970 18 H 0.128 0.872 19 C -0.152 4.152 20 C -0.033 4.033 21 C -0.142 4.142 22 C -0.099 4.099 23 C -0.152 4.152 24 C -0.067 4.067 25 C -0.177 4.177 26 C 0.371 3.629 27 O -0.326 6.326 28 O -0.247 6.247 29 N -0.223 5.223 30 H 0.082 0.918 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.148 0.852 34 H 0.244 0.756 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.852 -2.417 6.509 18.226 hybrid contribution 0.462 0.519 0.267 0.745 sum -16.390 -1.898 6.777 17.837 Atomic orbital electron populations 1.70104 1.07259 1.27607 1.29498 1.26033 0.94901 1.01064 0.93313 0.86309 0.80649 0.80805 0.79049 1.19525 1.20116 1.18468 1.19579 0.94708 0.89301 1.42904 0.89575 1.18183 0.86253 0.92103 0.88253 1.21751 0.98920 0.93691 1.16313 1.20821 0.93634 0.96698 0.96155 1.21573 0.94729 0.97744 1.19628 1.18381 0.82210 0.91522 0.95675 1.42962 1.05858 1.11445 1.68112 1.19545 0.87244 0.84287 0.78787 1.90704 1.69788 1.32079 1.43372 1.22577 0.93548 0.84437 0.96412 0.87220 1.21157 0.92535 1.05840 0.95644 1.19905 0.94598 0.94762 0.94060 1.21060 0.94803 1.00804 0.97558 1.21435 0.94104 0.95941 0.98372 1.21224 1.00578 0.98509 0.94931 1.21276 0.92335 0.96299 0.96809 1.20112 0.95472 1.04123 0.97953 1.20975 0.80909 0.76827 0.84228 1.90811 1.64897 1.39581 1.37349 1.87083 1.20717 1.33886 1.82993 1.68021 1.08499 1.24556 1.21268 0.91792 0.88066 0.88147 0.85233 0.75556 0.86770 0.87329 0.84578 0.85068 0.84929 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -17.88 11.49 55.55 0.64 -17.24 16 2 C 0.07 1.73 5.49 -17.35 -0.10 1.64 16 3 Si 0.91 17.76 29.56 -169.99 -5.03 12.74 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.43 -11.15 9.13 -37.73 -0.34 -11.49 16 8 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 9 C 0.28 7.39 6.54 -84.99 -0.56 6.84 16 10 C -0.28 -6.90 9.83 -38.66 -0.38 -7.28 16 11 C -0.05 -1.11 10.15 -39.39 -0.40 -1.51 16 12 C -0.31 -7.34 8.83 -38.89 -0.34 -7.69 16 13 C 0.36 8.34 7.51 -154.97 -1.16 7.18 16 14 N -0.64 -11.64 5.37 -11.40 -0.06 -11.70 16 15 C 0.52 8.96 7.00 -10.98 -0.08 8.89 16 16 O -0.49 -10.46 13.31 -13.97 -0.19 -10.65 16 17 C 0.09 1.15 3.16 -27.93 -0.09 1.07 16 18 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 19 C -0.11 -1.11 5.29 -27.99 -0.15 -1.25 16 20 C -0.03 -0.31 5.79 -104.25 -0.60 -0.91 16 21 C -0.12 -0.91 9.71 -39.61 -0.38 -1.30 16 22 C -0.08 -0.51 10.03 -39.50 -0.40 -0.91 16 23 C -0.13 -0.93 10.04 -39.60 -0.40 -1.32 16 24 C -0.05 -0.45 9.64 -39.23 -0.38 -0.83 16 25 C -0.17 -1.94 5.83 -104.92 -0.61 -2.55 16 26 C 0.53 7.59 7.83 34.79 0.27 7.86 16 27 O -0.44 -7.37 17.40 -19.08 -0.33 -7.70 16 28 O -0.33 -5.18 9.87 -50.16 -0.49 -5.68 16 29 N -0.50 -13.13 7.92 -10.25 -0.08 -13.21 16 30 H 0.27 6.03 8.29 -40.82 -0.34 5.70 16 31 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 32 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 33 H 0.13 3.02 5.34 -52.50 -0.28 2.74 16 34 H 0.41 6.32 8.83 -40.82 -0.36 5.96 16 35 H 0.11 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.14 1.18 7.77 -52.49 -0.41 0.78 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -33.23 350.80 -10.33 -43.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.97 Total: 8.19 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -6.10 Total: -3.59 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.50 Total: -42.15 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.01 Total: -24.03 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.23 -10.33 -43.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361737893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.103 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds