Wall clock time and date at job start Tue Mar 31 2020 21:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86794 * 120.00425 * 2 1 4 4 H 1.48510 * 109.47155 * 274.98741 * 3 2 1 5 5 H 1.48496 * 109.47037 * 34.98484 * 3 2 1 6 6 H 1.48500 * 109.47484 * 154.98778 * 3 2 1 7 7 C 1.40031 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00671 * 173.72317 * 7 2 1 9 9 C 1.41345 * 119.99501 * 353.72550 * 7 2 1 10 10 C 1.40623 * 119.78535 * 186.46022 * 9 7 2 11 11 C 1.38299 * 119.12671 * 180.02562 * 10 9 7 12 12 C 1.38701 * 118.66961 * 0.02562 * 11 10 9 13 13 C 1.39625 * 119.49853 * 359.97438 * 12 11 10 14 14 N 1.39272 * 119.57706 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99540 * 341.11005 * 14 13 12 16 16 O 1.21269 * 120.00181 * 354.40411 * 15 14 13 17 17 C 1.50705 * 119.99368 * 174.40007 * 15 14 13 18 18 H 1.08998 * 109.52944 * 55.09442 * 17 15 14 19 19 C 1.52903 * 109.50267 * 294.99641 * 17 15 14 20 20 C 1.50589 * 110.32102 * 190.15664 * 19 17 15 21 21 C 1.38086 * 119.91736 * 201.28140 * 20 19 17 22 22 C 1.38316 * 120.14153 * 180.24441 * 21 20 19 23 23 C 1.38394 * 120.47073 * 0.05349 * 22 21 20 24 24 C 1.38029 * 120.04327 * 359.89914 * 23 22 21 25 25 C 1.39396 * 119.65230 * 0.23116 * 24 23 22 26 26 C 1.48135 * 120.38516 * 180.69530 * 25 24 23 27 27 O 1.21471 * 121.47892 * 9.01558 * 26 25 24 28 28 O 1.35749 * 117.07722 * 189.25002 * 26 25 24 29 29 N 1.31934 * 120.85273 * 0.25423 * 13 12 11 30 30 H 0.97007 * 119.99795 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.43131 * 0.04511 * 10 9 7 32 32 H 1.07998 * 120.66517 * 180.02562 * 11 10 9 33 33 H 1.07998 * 120.24888 * 180.02562 * 12 11 10 34 34 H 0.97000 * 120.00289 * 161.10799 * 14 13 12 35 35 H 1.09004 * 109.32639 * 69.90038 * 19 17 15 36 36 H 1.08998 * 109.33432 * 310.42065 * 19 17 15 37 37 H 1.07996 * 119.92943 * 0.22063 * 21 20 19 38 38 H 1.08007 * 119.76746 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.97823 * 179.87526 * 23 22 21 40 40 H 1.07999 * 120.17007 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 2.3836 2.1072 -1.3949 5 1 1.4956 2.6199 0.8027 6 1 3.5877 1.4119 0.5920 7 6 2.0075 -1.2127 -0.0005 8 1 3.0826 -1.2156 -0.1028 9 6 1.3070 -2.4331 0.1327 10 6 2.0208 -3.6371 0.2685 11 6 1.3217 -4.8233 0.3974 12 6 -0.0647 -4.7831 0.3876 13 6 -0.7159 -3.5557 0.2494 14 7 -2.1079 -3.5135 0.2388 15 6 -2.8140 -4.6317 -0.0211 16 8 -2.2401 -5.6497 -0.3451 17 6 -4.3168 -4.6169 0.0910 18 1 -4.7211 -3.8219 -0.5355 19 6 -4.7177 -4.3738 1.5464 20 6 -6.1956 -4.6000 1.7265 21 6 -6.8530 -4.0342 2.8009 22 6 -8.2094 -4.2431 2.9736 23 6 -8.9198 -5.0198 2.0751 24 6 -8.2764 -5.5911 0.9958 25 6 -6.9090 -5.3851 0.8199 26 6 -6.2052 -5.9778 -0.3410 27 8 -6.8136 -6.5135 -1.2457 28 8 -4.8500 -5.9004 -0.3473 29 7 -0.0296 -2.4361 0.1233 30 1 -0.4850 0.8401 0.0004 31 1 3.1008 -3.6352 0.2724 32 1 1.8447 -5.7622 0.5037 33 1 -0.6361 -5.6941 0.4869 34 1 -2.5693 -2.6793 0.4184 35 1 -4.4737 -3.3476 1.8212 36 1 -4.1667 -5.0580 2.1916 37 1 -6.3069 -3.4276 3.5081 38 1 -8.7176 -3.7973 3.8159 39 1 -9.9782 -5.1794 2.2188 40 1 -8.8288 -6.1979 0.2936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361737893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:45 Heat of formation + Delta-G solvation = -54.199772 kcal Electronic energy + Delta-G solvation = -27761.652122 eV Core-core repulsion = 23699.293794 eV Total energy + Delta-G solvation = -4062.358328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.41251 -41.34481 -39.67587 -39.52688 -38.37312 -36.16474 -35.24323 -34.30388 -32.36611 -32.27124 -31.76112 -30.40065 -27.51814 -26.34632 -25.45369 -23.90476 -23.52213 -22.88351 -21.80893 -21.00191 -19.51787 -19.43109 -18.99443 -18.06369 -17.84480 -17.34729 -16.85424 -16.50159 -16.42747 -16.25138 -16.12283 -15.54908 -15.45549 -15.29970 -15.04107 -14.63128 -14.58488 -14.19728 -14.07597 -13.82559 -13.57670 -13.05897 -12.97839 -12.92717 -12.80918 -12.65600 -12.58232 -12.19310 -12.07211 -11.84787 -11.66629 -11.45830 -11.05558 -10.66547 -10.12061 -10.00923 -9.84201 -9.67869 -9.05946 -8.32457 -6.50600 -0.53369 0.27422 0.61292 0.90403 1.06413 1.42913 1.45633 1.46252 1.57487 1.63436 2.19552 2.26036 2.63471 2.85927 2.93575 3.13715 3.23184 3.62794 3.66087 3.80304 3.89655 4.14672 4.29509 4.31575 4.35672 4.45152 4.55828 4.58493 4.78238 4.85510 4.88273 4.91720 4.96087 5.17382 5.24460 5.29419 5.41907 5.56236 5.58808 5.65278 5.84302 5.91330 6.03196 6.11824 6.22084 6.40740 6.75060 6.87779 7.04915 8.05333 8.44492 Molecular weight = 338.11amu Principal moments of inertia in cm(-1) A = 0.015871 B = 0.002720 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.824142 B =10292.394101 C =11354.107777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.091 0.909 9 C 0.245 3.755 10 C -0.304 4.304 11 C -0.049 4.049 12 C -0.328 4.328 13 C 0.350 3.650 14 N -0.627 5.627 15 C 0.522 3.478 16 O -0.533 6.533 17 C 0.097 3.903 18 H 0.137 0.863 19 C -0.108 4.108 20 C -0.038 4.038 21 C -0.122 4.122 22 C -0.069 4.069 23 C -0.129 4.129 24 C -0.060 4.060 25 C -0.198 4.198 26 C 0.529 3.471 27 O -0.484 6.484 28 O -0.363 6.363 29 N -0.527 5.527 30 H 0.281 0.719 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.423 0.577 35 H 0.145 0.855 36 H 0.104 0.896 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.086 -0.040 9.438 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.109 0.891 9 C 0.119 3.881 10 C -0.326 4.326 11 C -0.073 4.073 12 C -0.353 4.353 13 C 0.115 3.885 14 N -0.275 5.275 15 C 0.308 3.692 16 O -0.408 6.408 17 C 0.039 3.961 18 H 0.154 0.846 19 C -0.144 4.144 20 C -0.038 4.038 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.078 4.078 25 C -0.199 4.199 26 C 0.373 3.627 27 O -0.369 6.369 28 O -0.282 6.282 29 N -0.247 5.247 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.261 0.739 35 H 0.163 0.837 36 H 0.122 0.878 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.504 -0.276 8.622 20.417 hybrid contribution 0.875 -0.208 -0.353 0.967 sum -17.629 -0.484 8.269 19.478 Atomic orbital electron populations 1.70152 1.08635 1.29231 1.28999 1.26897 0.95829 1.04200 0.92461 0.85128 0.79161 0.75911 0.79108 1.19188 1.18938 1.18203 1.19941 0.95245 0.90240 1.44012 0.89129 1.18677 0.87107 0.93317 0.89008 1.21914 0.99653 0.93674 1.17396 1.21165 0.93682 0.97576 0.94870 1.21780 0.95280 0.97985 1.20213 1.18698 0.84176 0.91045 0.94570 1.42862 1.04127 1.12602 1.67876 1.20298 0.89029 0.83006 0.76855 1.90672 1.71236 1.33583 1.45272 1.22644 0.89794 0.84151 0.99486 0.84557 1.21179 0.93050 1.07480 0.92723 1.19884 0.94083 0.95143 0.94713 1.21390 0.95456 1.00239 0.96850 1.21902 0.93729 0.94396 0.98597 1.21580 1.01982 0.97435 0.93703 1.21416 0.91679 0.96812 0.97884 1.19961 0.96292 1.06035 0.97635 1.21503 0.80285 0.76057 0.84820 1.90771 1.65279 1.41693 1.39107 1.86998 1.22122 1.35407 1.83678 1.68062 1.08633 1.25498 1.22483 0.90791 0.86829 0.85311 0.85194 0.73876 0.83748 0.87807 0.81973 0.81573 0.82099 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -36.87 11.49 21.84 0.25 -36.62 16 2 C 0.03 1.37 5.49 85.29 0.47 1.84 16 3 Si 0.99 35.82 29.56 68.60 2.03 37.85 16 4 H -0.27 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 7 C -0.46 -24.15 9.13 23.47 0.21 -23.94 16 8 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 9 C 0.25 13.31 6.54 40.21 0.26 13.57 16 10 C -0.30 -15.06 9.83 22.87 0.22 -14.83 16 11 C -0.05 -2.26 10.15 22.40 0.23 -2.03 16 12 C -0.33 -15.76 8.83 22.72 0.20 -15.56 16 13 C 0.35 16.71 7.51 133.23 1.00 17.71 16 14 N -0.63 -22.98 5.37 -308.38 -1.66 -24.64 16 15 C 0.52 18.30 7.00 87.66 0.61 18.91 16 16 O -0.53 -23.68 13.31 15.68 0.21 -23.47 16 17 C 0.10 2.49 3.16 29.82 0.09 2.58 16 18 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16 19 C -0.11 -1.89 5.29 29.78 0.16 -1.73 16 20 C -0.04 -0.63 5.79 -19.62 -0.11 -0.75 16 21 C -0.12 -1.29 9.71 22.25 0.22 -1.08 16 22 C -0.07 -0.56 10.03 22.33 0.22 -0.33 16 23 C -0.13 -1.34 10.04 22.26 0.22 -1.11 16 24 C -0.06 -1.02 9.64 22.50 0.22 -0.80 16 25 C -0.20 -4.26 5.83 -20.06 -0.12 -4.37 16 26 C 0.53 15.75 7.83 70.45 0.55 16.30 16 27 O -0.48 -16.98 17.40 19.78 0.34 -16.63 16 28 O -0.36 -11.88 9.87 -60.90 -0.60 -12.48 16 29 N -0.53 -27.94 7.92 -186.35 -1.48 -29.41 16 30 H 0.28 12.30 8.29 -92.70 -0.77 11.53 16 31 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 32 H 0.13 5.07 8.06 -2.91 -0.02 5.05 16 33 H 0.13 6.23 5.34 -3.12 -0.02 6.21 16 34 H 0.42 12.79 8.83 -92.71 -0.82 11.98 16 35 H 0.14 1.63 8.13 -2.38 -0.02 1.61 16 36 H 0.10 1.95 8.10 -2.39 -0.02 1.93 16 37 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 38 H 0.17 0.25 8.06 -2.91 -0.02 0.23 16 39 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.13 2.30 7.77 -2.91 -0.02 2.28 16 Total: -1.00 -76.08 350.80 4.06 -72.02 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.30 Total: 29.01 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 4.67 Total: 4.38 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -2.88 Total: -90.67 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -0.05 Total: -52.59 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Total: -76.08 4.06 -72.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361737893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.823 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds