Wall clock time and date at job start Tue Mar 31 2020 20:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39764 * 125.83668 * 2 1 4 4 C 1.36112 * 107.82424 * 180.14409 * 3 2 1 5 5 N 1.39468 * 126.21140 * 179.91130 * 4 3 2 6 6 C 1.34777 * 120.00408 * 359.68332 * 5 4 3 7 7 O 1.21286 * 119.99822 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 S 1.81401 * 109.47002 * 180.02562 * 8 6 5 10 10 C 1.76206 * 102.99841 * 179.97438 * 9 8 6 11 11 N 1.31156 * 125.55807 * 359.69693 * 10 9 8 12 12 N 1.40410 * 106.90397 * 179.88920 * 11 10 9 13 13 H 0.97000 * 126.76419 * 180.14724 * 12 11 10 14 14 C 1.34770 * 106.48018 * 0.36815 * 12 11 10 15 15 O 1.35422 * 125.97062 * 179.76034 * 14 12 11 16 16 N 1.31411 * 108.05752 * 359.77285 * 14 12 11 17 17 N 1.35259 * 107.56737 * 359.64533 * 4 3 2 18 18 C 1.46498 * 126.04347 * 180.22748 * 17 4 3 19 19 C 1.50701 * 109.47364 * 90.00076 * 18 17 4 20 20 H 1.08001 * 119.99950 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00333 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00246 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99874 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47219 * 89.99980 * 23 21 19 25 25 H 1.48502 * 109.47237 * 210.00150 * 23 21 19 26 26 H 1.48509 * 109.47061 * 329.99966 * 23 21 19 27 27 N 1.30850 * 125.84150 * 179.74848 * 2 1 3 28 28 H 1.08997 * 109.46586 * 270.23373 * 1 2 3 29 29 H 1.09004 * 109.47009 * 30.23264 * 1 2 3 30 30 H 1.09001 * 109.46916 * 150.23121 * 1 2 3 31 31 H 1.08000 * 126.08324 * 0.03896 * 3 2 1 32 32 H 0.97005 * 120.00129 * 179.69049 * 5 4 3 33 33 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 34 34 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 35 35 H 0.96708 * 113.99957 * 269.99473 * 15 14 12 36 36 H 1.09002 * 109.47024 * 209.99900 * 18 17 4 37 37 H 1.09000 * 109.47354 * 330.00222 * 18 17 4 38 38 H 0.97004 * 120.00129 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6197 0.7122 -0.0033 5 7 4.7512 1.5275 -0.0061 6 6 4.6157 2.8684 -0.0122 7 8 3.5096 3.3661 -0.0148 8 6 5.8384 3.7494 -0.0159 9 16 5.3291 5.4905 -0.0231 10 6 6.8657 6.3529 -0.0259 11 7 8.0530 5.7957 -0.0175 12 7 8.9934 6.8384 -0.0263 13 1 9.9592 6.7492 -0.0253 14 6 8.2897 7.9878 -0.0315 15 8 8.8091 9.2384 -0.0359 16 7 7.0114 7.6829 -0.0313 17 7 3.6092 -0.6404 0.0028 18 6 4.7871 -1.5115 0.0066 19 6 5.1909 -1.8040 1.4288 20 1 4.6269 -1.3827 2.2478 21 6 6.2805 -2.6093 1.6843 22 7 6.6332 -2.8641 2.9254 23 14 7.2556 -3.3386 0.2677 24 1 8.3471 -2.4067 -0.1135 25 1 7.8383 -4.6391 0.6856 26 1 6.3564 -3.5500 -0.8952 27 7 2.2732 -1.0607 0.0047 28 1 -0.3632 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.9901 2.1597 0.0006 32 1 5.6359 1.1295 -0.0038 33 1 6.4338 3.5410 -0.9048 34 1 6.4333 3.5489 0.8752 35 1 8.9590 9.6052 0.8463 36 1 4.5499 -2.4454 -0.5030 37 1 5.6084 -1.0143 -0.5093 38 1 7.4000 -3.4305 3.1051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361845041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:14 Heat of formation + Delta-G solvation = 108.060537 kcal Electronic energy + Delta-G solvation = -25368.054358 eV Core-core repulsion = 21376.928524 eV Total energy + Delta-G solvation = -3991.125834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53155 -41.01074 -39.31424 -38.21559 -34.92737 -33.82236 -33.08458 -32.22873 -31.34570 -30.54083 -29.42777 -27.88062 -26.35013 -23.81558 -22.97043 -22.60655 -21.68771 -19.96248 -19.89002 -19.47362 -18.15392 -17.26484 -17.16547 -16.76150 -16.67004 -16.59474 -15.89934 -14.97610 -14.92034 -14.59034 -14.21449 -14.07791 -13.98690 -13.73992 -13.16688 -13.13448 -12.75097 -12.61847 -12.34757 -12.01122 -11.93164 -11.85880 -11.19533 -11.17546 -11.06652 -10.87832 -10.58611 -10.49542 -10.28716 -10.27787 -10.14939 -9.80354 -9.66735 -8.90054 -8.04392 -7.97724 -7.56209 -6.37018 -4.41782 0.63481 0.84891 1.49877 1.94190 2.03312 2.18248 2.65416 2.95595 3.03628 3.14149 3.15377 3.43065 3.48893 3.59915 4.10811 4.26712 4.41202 4.70879 4.89037 5.01217 5.13196 5.26100 5.53559 5.54440 5.98803 5.99445 6.01121 6.03847 6.16266 6.23789 6.31622 6.57379 6.69992 6.84037 7.16124 7.30986 7.35106 7.44240 7.64619 8.02380 8.21791 8.51387 8.69317 9.17454 10.75120 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002884 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.074619 B = 9704.945369 C =11941.319186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.288 4.288 4 C 0.303 3.697 5 N -0.632 5.632 6 C 0.543 3.457 7 O -0.497 6.497 8 C -0.160 4.160 9 S 0.125 5.875 10 C 0.206 3.794 11 N -0.300 5.300 12 N -0.478 5.478 13 H 0.443 0.557 14 C 0.465 3.535 15 O -0.440 6.440 16 N -0.508 5.508 17 N -0.342 5.342 18 C 0.229 3.771 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.081 3.919 22 N -0.882 5.882 23 Si 0.871 3.129 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.280 5.280 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.165 0.835 32 H 0.418 0.582 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.417 0.583 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.820 19.665 -6.299 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.320 4.320 4 C 0.081 3.919 5 N -0.279 5.279 6 C 0.327 3.673 7 O -0.370 6.370 8 C -0.312 4.312 9 S 0.351 5.649 10 C -0.184 4.184 11 N -0.138 5.138 12 N -0.209 5.209 13 H 0.289 0.711 14 C 0.147 3.853 15 O -0.241 6.241 16 N -0.248 5.248 17 N -0.127 5.127 18 C 0.110 3.890 19 C -0.585 4.585 20 H 0.100 0.900 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.697 3.303 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.105 5.105 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.182 0.818 32 H 0.255 0.745 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.277 0.723 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.148 18.627 -6.767 20.066 hybrid contribution 3.767 -0.089 0.053 3.769 sum 6.915 18.538 -6.713 20.894 Atomic orbital electron populations 1.20046 0.87310 1.02453 1.02393 1.22071 0.96649 0.90904 1.01336 1.21306 0.88889 1.00656 1.21151 1.17836 0.87831 0.83092 1.03174 1.42515 1.08571 1.05088 1.71774 1.19307 0.89668 0.81455 0.76897 1.90705 1.25925 1.73233 1.47170 1.23724 1.01225 0.96408 1.09816 1.86540 0.92188 0.94486 1.91696 1.26383 0.99062 0.92112 1.00812 1.78542 0.96874 1.08788 1.29571 1.48265 1.10756 1.03959 1.57962 0.71052 1.21268 0.85736 0.82256 0.96011 1.84868 1.82262 1.21918 1.35071 1.70840 1.14421 1.12676 1.26909 1.48907 1.06270 1.01901 1.55653 1.19950 0.79229 0.90103 0.99719 1.21192 1.14272 1.32701 0.90293 0.90005 1.24821 0.96630 0.95202 0.95774 1.69869 1.26776 1.36665 1.18565 0.86932 0.80773 0.79790 0.82837 1.19671 1.20340 1.18708 1.77383 0.85701 1.21725 1.25690 0.91085 0.90961 0.91483 0.81774 0.74523 0.85413 0.85139 0.72333 0.92662 0.94722 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.53 16 2 C 0.06 1.08 7.21 -82.44 -0.59 0.48 16 3 C -0.29 -5.64 9.58 -39.78 -0.38 -6.02 16 4 C 0.30 6.05 7.66 -153.16 -1.17 4.87 16 5 N -0.63 -10.17 5.41 -11.46 -0.06 -10.23 16 6 C 0.54 7.84 7.81 -10.98 -0.09 7.76 16 7 O -0.50 -8.39 12.99 5.55 0.07 -8.32 16 8 C -0.16 -1.73 6.04 36.01 0.22 -1.51 16 9 S 0.13 1.50 21.30 -107.50 -2.29 -0.79 16 10 C 0.21 2.48 8.28 -90.95 -0.75 1.73 16 11 N -0.30 -3.30 12.34 30.14 0.37 -2.93 16 12 N -0.48 -3.76 7.45 29.39 0.22 -3.55 16 13 H 0.44 1.85 8.96 -182.36 -1.63 0.22 16 14 C 0.46 4.04 9.54 -89.86 -0.86 3.18 16 15 O -0.44 -2.32 13.63 -17.96 -0.24 -2.56 16 16 N -0.51 -6.09 11.25 -14.97 -0.17 -6.26 16 17 N -0.34 -7.64 3.60 -61.57 -0.22 -7.86 16 18 C 0.23 5.23 5.07 -5.19 -0.03 5.21 16 19 C -0.55 -14.63 9.94 -34.44 -0.34 -14.97 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 22 N -0.88 -25.33 13.96 55.43 0.77 -24.55 16 23 Si 0.87 19.18 27.47 -169.99 -4.67 14.51 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 27 N -0.28 -6.28 12.56 33.65 0.42 -5.86 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.16 3.09 5.83 -52.49 -0.31 2.79 16 32 H 0.42 5.97 7.97 -40.82 -0.33 5.64 16 33 H 0.13 1.12 8.14 -51.92 -0.42 0.70 16 34 H 0.13 1.26 8.14 -51.92 -0.42 0.83 16 35 H 0.42 -0.16 9.06 45.56 0.41 0.26 16 36 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 37 H 0.04 0.70 6.93 -51.93 -0.36 0.34 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -36.54 352.80 -8.49 -45.02 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.29 Total: 5.81 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -3.72 Total: 2.25 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 1.33 Total: -61.24 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.17 Total: -10.88 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.29 Total: -0.79 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.54 -8.49 -45.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361845041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.085 kcal (2) G-P(sol) polarization free energy of solvation -36.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds