Wall clock time and date at job start Tue Mar 31 2020 20:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39764 * 125.83668 * 2 1 4 4 C 1.36112 * 107.82424 * 180.14409 * 3 2 1 5 5 N 1.39468 * 126.21140 * 179.91130 * 4 3 2 6 6 C 1.34777 * 120.00408 * 359.68332 * 5 4 3 7 7 O 1.21286 * 119.99822 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00161 * 180.02562 * 6 5 4 9 9 S 1.81401 * 109.47002 * 180.02562 * 8 6 5 10 10 C 1.76206 * 102.99841 * 179.97438 * 9 8 6 11 11 N 1.31156 * 125.55807 * 359.69693 * 10 9 8 12 12 N 1.40410 * 106.90397 * 179.88920 * 11 10 9 13 13 H 0.97000 * 126.76419 * 180.14724 * 12 11 10 14 14 C 1.34770 * 106.48018 * 0.36815 * 12 11 10 15 15 O 1.35422 * 125.97062 * 179.76034 * 14 12 11 16 16 N 1.31411 * 108.05752 * 359.77285 * 14 12 11 17 17 N 1.35259 * 107.56737 * 359.64533 * 4 3 2 18 18 C 1.46498 * 126.04347 * 180.22748 * 17 4 3 19 19 C 1.50701 * 109.47364 * 90.00076 * 18 17 4 20 20 H 1.08001 * 119.99950 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00333 * 179.97438 * 19 18 17 22 22 N 1.31509 * 120.00246 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99874 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47219 * 89.99980 * 23 21 19 25 25 H 1.48502 * 109.47237 * 210.00150 * 23 21 19 26 26 H 1.48509 * 109.47061 * 329.99966 * 23 21 19 27 27 N 1.30850 * 125.84150 * 179.74848 * 2 1 3 28 28 H 1.08997 * 109.46586 * 270.23373 * 1 2 3 29 29 H 1.09004 * 109.47009 * 30.23264 * 1 2 3 30 30 H 1.09001 * 109.46916 * 150.23121 * 1 2 3 31 31 H 1.08000 * 126.08324 * 0.03896 * 3 2 1 32 32 H 0.97005 * 120.00129 * 179.69049 * 5 4 3 33 33 H 1.09002 * 109.47152 * 60.00245 * 8 6 5 34 34 H 1.09001 * 109.46980 * 300.00345 * 8 6 5 35 35 H 0.96708 * 113.99957 * 269.99473 * 15 14 12 36 36 H 1.09002 * 109.47024 * 209.99900 * 18 17 4 37 37 H 1.09000 * 109.47354 * 330.00222 * 18 17 4 38 38 H 0.97004 * 120.00129 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1331 0.0000 4 6 3.6197 0.7122 -0.0033 5 7 4.7512 1.5275 -0.0061 6 6 4.6157 2.8684 -0.0122 7 8 3.5096 3.3661 -0.0148 8 6 5.8384 3.7494 -0.0159 9 16 5.3291 5.4905 -0.0231 10 6 6.8657 6.3529 -0.0259 11 7 8.0530 5.7957 -0.0175 12 7 8.9934 6.8384 -0.0263 13 1 9.9592 6.7492 -0.0253 14 6 8.2897 7.9878 -0.0315 15 8 8.8091 9.2384 -0.0359 16 7 7.0114 7.6829 -0.0313 17 7 3.6092 -0.6404 0.0028 18 6 4.7871 -1.5115 0.0066 19 6 5.1909 -1.8040 1.4288 20 1 4.6269 -1.3827 2.2478 21 6 6.2805 -2.6093 1.6843 22 7 6.6332 -2.8641 2.9254 23 14 7.2556 -3.3386 0.2677 24 1 8.3471 -2.4067 -0.1135 25 1 7.8383 -4.6391 0.6856 26 1 6.3564 -3.5500 -0.8952 27 7 2.2732 -1.0607 0.0047 28 1 -0.3632 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3633 -0.8921 -0.5102 31 1 1.9901 2.1597 0.0006 32 1 5.6359 1.1295 -0.0038 33 1 6.4338 3.5410 -0.9048 34 1 6.4333 3.5489 0.8752 35 1 8.9590 9.6052 0.8463 36 1 4.5499 -2.4454 -0.5030 37 1 5.6084 -1.0143 -0.5093 38 1 7.4000 -3.4305 3.1051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361845041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:13 Heat of formation + Delta-G solvation = 76.591184 kcal Electronic energy + Delta-G solvation = -25369.418971 eV Core-core repulsion = 21376.928524 eV Total energy + Delta-G solvation = -3992.490448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 338.095 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.25445 -42.48268 -40.63930 -38.69893 -36.34788 -35.58940 -33.99729 -33.81370 -32.27349 -31.54994 -30.92427 -29.29124 -28.00382 -24.57674 -24.45405 -23.65217 -22.98039 -21.34041 -20.88979 -20.52579 -19.25903 -18.92244 -18.44435 -17.98665 -17.67963 -17.33491 -17.05658 -16.55177 -16.17484 -15.67532 -15.51205 -15.36669 -14.97004 -14.84632 -14.43421 -14.36785 -14.15727 -14.14803 -13.73074 -13.50097 -13.13000 -12.90544 -12.60117 -12.54341 -12.14967 -11.90674 -11.90050 -11.87452 -11.79023 -11.55394 -11.30460 -11.08818 -11.03201 -10.91114 -9.62901 -9.11159 -8.86234 -8.42038 -6.54596 -0.25191 0.16988 0.68346 0.73889 1.21319 1.29672 1.33160 1.39474 1.43806 1.47813 1.55470 2.01679 2.15178 2.25047 2.89654 2.91930 3.23228 3.59877 3.78948 3.89574 4.16969 4.20861 4.45864 4.48758 4.58094 4.66566 4.78635 4.82312 4.91288 4.95706 5.13793 5.20306 5.23198 5.66821 5.86910 5.97198 6.11543 6.29135 6.43225 6.49864 6.61161 6.79183 6.97273 7.10417 8.74305 Molecular weight = 338.09amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.002884 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.074619 B = 9704.945369 C =11941.319186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.060 3.940 3 C -0.302 4.302 4 C 0.301 3.699 5 N -0.630 5.630 6 C 0.546 3.454 7 O -0.521 6.521 8 C -0.145 4.145 9 S 0.101 5.899 10 C 0.198 3.802 11 N -0.312 5.312 12 N -0.464 5.464 13 H 0.459 0.541 14 C 0.478 3.522 15 O -0.436 6.436 16 N -0.546 5.546 17 N -0.365 5.365 18 C 0.237 3.763 19 C -0.553 4.553 20 H 0.023 0.977 21 C 0.025 3.975 22 N -0.935 5.935 23 Si 0.948 3.052 24 H -0.244 1.244 25 H -0.281 1.281 26 H -0.247 1.247 27 N -0.326 5.326 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.076 0.924 31 H 0.172 0.828 32 H 0.426 0.574 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.442 0.558 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.450 20.803 -8.146 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.334 4.334 4 C 0.079 3.921 5 N -0.279 5.279 6 C 0.332 3.668 7 O -0.395 6.395 8 C -0.296 4.296 9 S 0.327 5.673 10 C -0.192 4.192 11 N -0.151 5.151 12 N -0.197 5.197 13 H 0.309 0.691 14 C 0.160 3.840 15 O -0.241 6.241 16 N -0.287 5.287 17 N -0.150 5.150 18 C 0.117 3.883 19 C -0.591 4.591 20 H 0.042 0.958 21 C -0.175 4.175 22 N -0.572 5.572 23 Si 0.769 3.231 24 H -0.168 1.168 25 H -0.207 1.207 26 H -0.170 1.170 27 N -0.151 5.151 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.189 0.811 32 H 0.265 0.735 33 H 0.172 0.828 34 H 0.164 0.836 35 H 0.306 0.694 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.816 19.820 -8.599 22.136 hybrid contribution 3.241 -0.254 0.734 3.333 sum 8.057 19.567 -7.865 22.575 Atomic orbital electron populations 1.20242 0.83923 1.04237 1.03647 1.22892 0.98766 0.90073 0.98753 1.21530 0.89029 1.01013 1.21780 1.18197 0.89336 0.82719 1.01840 1.42644 1.07955 1.05384 1.71918 1.19891 0.90526 0.80933 0.75463 1.90686 1.27383 1.73487 1.47963 1.23634 0.99385 0.94803 1.11785 1.86599 0.93259 0.95353 1.92133 1.26208 0.99013 0.92296 1.01647 1.78441 0.96939 1.09953 1.29719 1.48148 1.11309 1.03205 1.57074 0.69068 1.21203 0.85121 0.83308 0.94328 1.84860 1.81682 1.20252 1.37318 1.70761 1.16440 1.12916 1.28629 1.48821 1.06151 1.02642 1.57406 1.19770 0.80571 0.90803 0.97113 1.21223 1.13999 1.32869 0.90998 0.95834 1.25815 0.97624 0.95187 0.98905 1.70033 1.27829 1.37859 1.21525 0.85720 0.79553 0.78874 0.78949 1.16808 1.20690 1.17009 1.77322 0.86214 1.23482 1.28103 0.89943 0.88373 0.90497 0.81107 0.73544 0.82821 0.83633 0.69362 0.93024 0.91307 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.69 10.44 71.24 0.74 -0.94 16 2 C 0.06 2.34 7.21 43.08 0.31 2.65 16 3 C -0.30 -11.78 9.58 22.14 0.21 -11.57 16 4 C 0.30 12.04 7.66 131.32 1.01 13.05 16 5 N -0.63 -19.82 5.41 -308.57 -1.67 -21.49 16 6 C 0.55 15.28 7.81 87.66 0.68 15.96 16 7 O -0.52 -17.37 12.99 -3.05 -0.04 -17.41 16 8 C -0.14 -2.90 6.04 71.24 0.43 -2.47 16 9 S 0.10 2.34 21.30 -56.49 -1.20 1.14 16 10 C 0.20 4.56 8.28 180.46 1.49 6.05 16 11 N -0.31 -6.29 12.34 -58.57 -0.72 -7.01 16 12 N -0.46 -6.26 7.45 -172.64 -1.29 -7.55 16 13 H 0.46 2.66 8.96 -213.12 -1.91 0.74 16 14 C 0.48 7.34 9.54 180.08 1.72 9.06 16 15 O -0.44 -3.48 13.63 -87.17 -1.19 -4.67 16 16 N -0.55 -12.45 11.25 -314.72 -3.54 -15.99 16 17 N -0.37 -16.44 3.60 -348.72 -1.26 -17.70 16 18 C 0.24 10.76 5.07 85.63 0.43 11.19 16 19 C -0.55 -30.41 9.94 25.60 0.25 -30.16 16 20 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 21 C 0.03 1.35 5.47 84.66 0.46 1.81 16 22 N -0.93 -55.03 13.96 21.45 0.30 -54.73 16 23 Si 0.95 38.68 27.47 68.60 1.88 40.56 16 24 H -0.24 -8.91 7.11 99.48 0.71 -8.21 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.25 -9.37 6.54 99.48 0.65 -8.72 16 27 N -0.33 -14.86 12.56 -47.44 -0.60 -15.45 16 28 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.17 6.39 5.83 -2.91 -0.02 6.37 16 32 H 0.43 11.63 7.97 -92.70 -0.74 10.90 16 33 H 0.15 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.44 -1.58 9.06 -74.05 -0.67 -2.25 16 36 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 37 H 0.07 2.63 6.93 -2.39 -0.02 2.62 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -82.49 352.80 -3.76 -86.26 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -2.20 Total: 19.41 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 7.75 Total: 14.64 kcal Atomic # 7 Polarization: -131.16 SS G_CDS: -8.77 Total: -139.93 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -1.23 Total: -22.07 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.88 Total: 40.56 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.20 Total: 1.14 kcal Total: -82.49 -3.76 -86.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361845041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.849 kcal (2) G-P(sol) polarization free energy of solvation -82.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds