Wall clock time and date at job start Tue Mar 31 2020 20:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30868 * 1 3 3 Si 1.86801 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47221 * 240.00177 * 3 2 1 5 5 H 1.48502 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47148 * 119.99821 * 3 2 1 7 7 C 1.39912 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99855 * 175.38586 * 7 2 1 9 9 C 1.41139 * 119.99855 * 355.38948 * 7 2 1 10 10 C 1.40875 * 120.16286 * 214.85235 * 9 7 2 11 11 C 1.36364 * 119.83313 * 180.02562 * 10 9 7 12 12 C 1.39507 * 120.16424 * 359.97438 * 11 10 9 13 13 N 1.39137 * 119.83212 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00597 * 35.22868 * 13 12 11 15 15 O 1.21609 * 119.99227 * 355.37036 * 14 13 12 16 16 C 1.47476 * 120.00873 * 175.64395 * 14 13 12 17 17 C 1.36624 * 125.78130 * 179.43789 * 16 14 13 18 18 N 1.34818 * 106.83719 * 179.87439 * 17 16 14 19 19 C 1.46499 * 126.59279 * 180.10033 * 18 17 16 20 20 F 1.39901 * 109.47237 * 300.31277 * 19 18 17 21 21 F 1.39905 * 109.47160 * 60.31192 * 19 18 17 22 22 C 1.52998 * 109.47078 * 180.31090 * 19 18 17 23 23 O 1.42897 * 109.47063 * 60.00190 * 22 19 18 24 24 N 1.40205 * 106.81142 * 0.38475 * 18 17 16 25 25 N 1.28757 * 108.37878 * 359.75357 * 24 18 17 26 26 C 1.39504 * 120.32906 * 0.27822 * 12 11 10 27 27 C 1.36360 * 120.16841 * 359.44365 * 26 12 11 28 28 H 0.97008 * 119.99888 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.08351 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.91733 * 179.97438 * 11 10 9 31 31 H 0.97007 * 119.99901 * 215.22233 * 13 12 11 32 32 H 1.08007 * 126.57686 * 0.02562 * 17 16 14 33 33 H 1.09005 * 109.47207 * 180.02562 * 22 19 18 34 34 H 1.08997 * 109.47021 * 299.99972 * 22 19 18 35 35 H 0.96697 * 114.00004 * 179.97438 * 23 22 19 36 36 H 1.07996 * 119.91487 * 179.71823 * 26 12 11 37 37 H 1.07995 * 120.09076 * 180.26543 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2778 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2117 0.0005 8 1 3.0856 -1.2132 -0.0747 9 6 1.3059 -2.4319 0.0993 10 6 1.8664 -3.5162 0.8027 11 6 1.1822 -4.6923 0.8935 12 6 -0.0700 -4.8231 0.2925 13 7 -0.7623 -6.0261 0.3899 14 6 -0.6774 -6.7633 1.5149 15 8 0.0693 -6.4206 2.4115 16 6 -1.4855 -7.9889 1.6563 17 6 -1.4838 -8.8267 2.7355 18 7 -2.3581 -9.8162 2.4630 19 6 -2.6936 -10.9484 3.3300 20 9 -1.5384 -11.6922 3.5937 21 9 -3.2267 -10.4728 4.5329 22 6 -3.7244 -11.8376 2.6316 23 8 -3.1799 -12.3234 1.4030 24 7 -2.8795 -9.5568 1.1876 25 7 -2.3439 -8.4737 0.7427 26 6 -0.6290 -3.7554 -0.4102 27 6 0.0408 -2.5715 -0.5047 28 1 -0.4850 0.8401 -0.0004 29 1 2.8359 -3.4166 1.2682 30 1 1.6107 -5.5246 1.4321 31 1 -1.3061 -6.3341 -0.3519 32 1 -0.8968 -8.7161 3.6353 33 1 -3.9744 -12.6798 3.2769 34 1 -4.6244 -11.2580 2.4263 35 1 -3.7802 -12.8958 0.9059 36 1 -1.5968 -3.8655 -0.8767 37 1 -0.3951 -1.7444 -1.0453 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362019788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:17 Heat of formation + Delta-G solvation = -39.490400 kcal Electronic energy + Delta-G solvation = -27742.725509 eV Core-core repulsion = 23159.068249 eV Total energy + Delta-G solvation = -4583.657260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.05957 -48.15379 -42.45129 -39.48252 -37.69168 -37.19398 -34.63465 -34.32623 -32.89369 -31.40955 -29.82701 -29.52471 -28.70174 -25.44136 -25.00864 -23.43586 -22.23784 -21.50431 -20.78291 -20.07422 -19.25608 -19.07111 -17.78586 -17.44091 -17.30956 -16.98993 -16.15051 -15.93980 -15.51064 -15.23670 -15.14621 -14.84476 -14.45889 -14.33991 -14.32259 -14.23147 -13.90713 -13.84060 -12.97855 -12.71740 -12.50907 -12.23649 -12.11492 -11.77242 -11.65402 -11.35586 -11.29033 -11.12483 -11.02402 -10.99890 -10.73064 -10.13357 -9.60999 -9.53806 -9.44871 -9.21778 -8.89361 -7.53190 -6.85725 -6.60776 -4.33203 0.65846 0.97460 1.56386 2.33044 2.69776 2.98825 3.09943 3.11411 3.12841 3.16625 3.39610 3.51486 3.66282 3.86842 3.99151 4.15615 4.27162 4.51596 4.58208 4.71731 4.76860 4.82525 5.50735 5.65821 5.69029 6.23224 6.45179 6.74878 6.77278 6.92098 7.07358 7.20305 7.29815 7.53145 7.65258 7.76034 7.85998 8.07197 8.25766 8.32494 8.60220 8.69542 8.93563 9.00549 10.29999 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.035314 B = 0.002029 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.692242 B =13793.280855 C =14028.483223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.083 4.083 12 C 0.000 4.000 13 N -0.629 5.629 14 C 0.584 3.416 15 O -0.526 6.526 16 C -0.077 4.077 17 C 0.105 3.895 18 N -0.421 5.421 19 C 0.529 3.471 20 F -0.160 7.160 21 F -0.160 7.160 22 C 0.059 3.941 23 O -0.543 6.543 24 N -0.018 5.018 25 N -0.190 5.190 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.404 0.596 32 H 0.210 0.790 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.399 0.601 36 H 0.093 0.907 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -22.204 4.697 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.226 4.226 11 C -0.103 4.103 12 C -0.092 4.092 13 N -0.270 5.270 14 C 0.368 3.632 15 O -0.402 6.402 16 C -0.214 4.214 17 C -0.047 4.047 18 N -0.215 5.215 19 C 0.411 3.589 20 F -0.141 7.141 21 F -0.141 7.141 22 C -0.022 4.022 23 O -0.351 6.351 24 N 0.002 4.998 25 N -0.067 5.067 26 C -0.136 4.136 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.239 0.761 32 H 0.226 0.774 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.250 0.750 36 H 0.111 0.889 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.213 -21.951 4.535 24.631 hybrid contribution 0.246 0.521 0.760 0.954 sum -9.967 -21.430 5.296 24.221 Atomic orbital electron populations 1.69755 1.07283 1.28843 1.37878 1.25892 0.94956 1.01188 0.92567 0.86240 0.79787 0.80086 0.79769 1.19045 1.20451 1.19099 1.19475 0.94751 0.90220 1.44591 0.90590 1.17741 0.92274 0.92000 0.88117 1.20803 1.01255 0.94933 1.05610 1.20414 0.92666 0.97874 0.99379 1.17253 0.94292 0.85596 1.12075 1.42727 1.47717 1.20860 1.15698 1.16695 0.81995 0.81479 0.83022 1.90815 1.38574 1.69992 1.40788 1.21754 1.04776 1.01638 0.93192 1.23523 0.92546 0.87228 1.01394 1.51363 1.33277 1.19996 1.16869 1.19870 0.82171 0.79579 0.77320 1.93210 1.51690 1.75302 1.93919 1.93210 1.85872 1.88803 1.46233 1.22738 0.93201 0.97386 0.88852 1.86515 1.45141 1.70459 1.32984 1.82121 1.18104 1.10711 0.88865 1.74670 1.05669 1.02864 1.23492 1.20330 0.98414 0.92997 1.01848 1.21199 0.97272 0.95545 1.02163 0.91057 0.88497 0.87336 0.76099 0.77360 0.88640 0.88792 0.75027 0.88867 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.12 10.59 55.55 0.59 -20.54 16 2 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.04 29.56 -169.99 -5.03 14.02 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.26 9.02 -37.86 -0.34 -12.60 16 8 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 9 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 10 C -0.21 -5.22 9.74 -39.26 -0.38 -5.60 16 11 C -0.08 -2.01 8.61 -39.78 -0.34 -2.35 16 12 C 0.00 0.00 6.31 -83.60 -0.53 -0.53 16 13 N -0.63 -11.88 5.30 -10.70 -0.06 -11.93 16 14 C 0.58 10.82 7.65 -12.50 -0.10 10.72 16 15 O -0.53 -11.18 14.26 5.27 0.08 -11.10 16 16 C -0.08 -1.17 6.99 -83.56 -0.58 -1.76 16 17 C 0.11 1.31 11.23 -16.82 -0.19 1.13 16 18 N -0.42 -4.76 3.81 -59.61 -0.23 -4.99 16 19 C 0.53 4.40 2.55 -4.04 -0.01 4.39 16 20 F -0.16 -1.49 17.15 2.25 0.04 -1.45 16 21 F -0.16 -1.27 17.22 2.25 0.04 -1.23 16 22 C 0.06 0.28 6.37 37.16 0.24 0.52 16 23 O -0.54 -3.32 12.68 -35.23 -0.45 -3.76 16 24 N -0.02 -0.23 12.19 60.35 0.74 0.51 16 25 N -0.19 -2.78 12.04 32.84 0.40 -2.39 16 26 C -0.12 -2.68 9.90 -39.79 -0.39 -3.07 16 27 C -0.14 -3.66 8.62 -39.26 -0.34 -4.00 16 28 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.11 2.55 6.20 -52.49 -0.33 2.22 16 31 H 0.40 6.58 8.51 -40.82 -0.35 6.23 16 32 H 0.21 2.10 8.06 -52.48 -0.42 1.68 16 33 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 0.38 9.12 45.56 0.42 0.80 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.13 3.53 6.13 -52.49 -0.32 3.20 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -32.81 340.65 -4.64 -37.45 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -2.24 Total: 9.65 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -3.66 Total: -9.37 kcal Atomic # 7 Polarization: -40.77 SS G_CDS: 1.44 Total: -39.34 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.37 Total: -14.86 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.08 Total: -2.68 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.81 -4.64 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362019788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.038 kcal (2) G-P(sol) polarization free energy of solvation -32.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds