Wall clock time and date at job start Tue Mar 31 2020 21:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99592 * 2 1 4 4 H 1.48507 * 109.47197 * 270.00022 * 3 2 1 5 5 H 1.48495 * 109.47693 * 30.00235 * 3 2 1 6 6 H 1.48508 * 109.46868 * 150.00327 * 3 2 1 7 7 C 1.37873 * 120.00433 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00384 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99873 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47152 * 299.99916 * 9 7 2 11 11 N 1.46500 * 109.47155 * 179.97438 * 9 7 2 12 12 C 1.34779 * 119.99793 * 154.99862 * 11 9 7 13 13 O 1.21279 * 120.00185 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99614 * 179.97438 * 12 11 9 15 15 C 1.53000 * 109.46917 * 180.02562 * 14 12 11 16 16 C 1.53002 * 109.47199 * 180.02562 * 15 14 12 17 17 N 1.46494 * 109.47129 * 179.97438 * 16 15 14 18 18 C 1.36372 * 125.96677 * 269.69395 * 17 16 15 19 19 O 1.35631 * 125.98875 * 0.03481 * 18 17 16 20 20 N 1.30915 * 108.02206 * 179.88880 * 18 17 16 21 21 N 1.40107 * 107.94003 * 0.37026 * 20 18 17 22 22 C 1.30907 * 107.94116 * 359.76169 * 21 20 18 23 23 O 1.35626 * 125.98928 * 179.97438 * 22 21 20 24 24 C 1.53000 * 109.46912 * 60.00145 * 9 7 2 25 25 F 1.39898 * 109.46890 * 180.02562 * 24 9 7 26 26 F 1.39904 * 109.47059 * 299.99645 * 24 9 7 27 27 F 1.39895 * 109.47411 * 59.99903 * 24 9 7 28 28 H 0.97001 * 120.00323 * 359.97438 * 1 2 3 29 29 H 0.97004 * 120.00223 * 334.99953 * 11 9 7 30 30 H 1.09002 * 109.47423 * 300.00169 * 14 12 11 31 31 H 1.09002 * 109.46795 * 60.00420 * 14 12 11 32 32 H 1.09002 * 109.47125 * 300.00244 * 15 14 12 33 33 H 1.09002 * 109.47464 * 60.00088 * 15 14 12 34 34 H 1.08989 * 109.47301 * 300.00420 * 16 15 14 35 35 H 1.09002 * 109.46682 * 60.00210 * 16 15 14 36 36 H 0.96702 * 113.99848 * 90.00038 * 19 18 17 37 37 H 0.96702 * 114.00277 * 270.03154 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 7 2.2032 -3.6126 -0.0018 12 6 1.8374 -4.8125 0.4913 13 8 0.7201 -4.9705 0.9356 14 6 2.8166 -5.9580 0.4895 15 6 2.1547 -7.1956 1.0986 16 6 3.1490 -8.3585 1.0974 17 7 2.5155 -9.5433 1.6812 18 6 2.5294 -9.8914 2.9997 19 8 3.1315 -9.2011 3.9999 20 7 1.8570 -11.0070 3.1312 21 7 1.4056 -11.3910 1.8617 22 6 1.8137 -10.4939 1.0001 23 8 1.5801 -10.5076 -0.3358 24 6 0.3710 -2.5799 -1.2495 25 9 -0.3288 -3.7912 -1.2492 26 9 -0.5382 -1.5166 -1.2489 27 9 1.1749 -2.5055 -2.3920 28 1 -0.4851 0.8400 0.0004 29 1 3.0968 -3.4863 -0.3574 30 1 3.1196 -6.1754 -0.5348 31 1 3.6933 -5.6875 1.0781 32 1 1.8514 -6.9785 2.1228 33 1 1.2782 -7.4660 0.5097 34 1 3.4528 -8.5758 0.0735 35 1 4.0252 -8.0879 1.6866 36 1 2.5633 -8.5405 4.4194 37 1 2.2564 -10.9710 -0.8486 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362934107.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:04 Heat of formation + Delta-G solvation = -200.082385 kcal Electronic energy + Delta-G solvation = -29742.356688 eV Core-core repulsion = 24720.966412 eV Total energy + Delta-G solvation = -5021.390276 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.43021 -48.06785 -47.74107 -43.29025 -40.64700 -39.10905 -38.02696 -36.88591 -36.31409 -34.46833 -33.41844 -30.66545 -30.54243 -27.93441 -26.57791 -24.26740 -23.81459 -23.09327 -22.55540 -21.35959 -19.85584 -19.66803 -19.26095 -18.86848 -18.67632 -18.28777 -17.66141 -17.62115 -17.14565 -16.84937 -16.60830 -16.36983 -15.78533 -15.11392 -15.04168 -14.93632 -14.85241 -14.49565 -14.42042 -14.29883 -14.04365 -13.95985 -13.87742 -13.61428 -13.34635 -13.18210 -12.96818 -12.88431 -12.72370 -12.64812 -12.32999 -12.20584 -11.92580 -11.57121 -11.49532 -11.07841 -10.79648 -10.70122 -10.53796 -10.03857 -8.22062 -6.53104 0.52650 0.76645 1.16145 1.46719 1.47309 1.58659 1.71864 2.21979 2.24628 2.40493 2.54064 2.92498 2.93959 3.53544 3.62002 3.78740 3.87035 3.90869 4.08310 4.13098 4.21001 4.33994 4.41425 4.48426 4.68627 4.72693 4.94629 5.05540 5.18749 5.35529 5.44298 5.55390 5.65264 6.25726 6.48212 6.52724 6.76931 6.81812 7.17311 7.42677 8.70424 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.021648 B = 0.002597 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.089818 B =10779.492484 C =11413.279643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.982 3.018 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.560 4.560 8 H 0.096 0.904 9 C 0.251 3.749 10 H 0.044 0.956 11 N -0.706 5.706 12 C 0.494 3.506 13 O -0.588 6.588 14 C -0.119 4.119 15 C -0.113 4.113 16 C 0.105 3.895 17 N -0.505 5.505 18 C 0.417 3.583 19 O -0.434 6.434 20 N -0.344 5.344 21 N -0.345 5.345 22 C 0.418 3.582 23 O -0.436 6.436 24 C 0.412 3.588 25 F -0.220 7.220 26 F -0.153 7.153 27 F -0.202 7.202 28 H 0.267 0.733 29 H 0.417 0.583 30 H 0.128 0.872 31 H 0.137 0.863 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.433 0.567 37 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.192 -12.828 -0.306 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.597 4.597 8 H 0.114 0.886 9 C 0.143 3.857 10 H 0.061 0.939 11 N -0.357 5.357 12 C 0.282 3.718 13 O -0.468 6.468 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.017 4.017 17 N -0.224 5.224 18 C 0.106 3.894 19 O -0.238 6.238 20 N -0.188 5.188 21 N -0.190 5.190 22 C 0.107 3.893 23 O -0.240 6.240 24 C 0.355 3.645 25 F -0.202 7.202 26 F -0.135 7.135 27 F -0.184 7.184 28 H 0.077 0.923 29 H 0.254 0.746 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.296 0.704 37 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 11.542 -14.098 0.611 18.231 hybrid contribution 0.302 2.321 -1.089 2.582 sum 11.844 -11.777 -0.478 16.710 Atomic orbital electron populations 1.70537 1.07593 1.28098 1.44839 1.26019 0.95842 1.03820 0.93544 0.85179 0.78714 0.77179 0.78385 1.20090 1.21157 1.17700 1.21264 0.94651 0.88303 1.55455 0.88609 1.19263 0.89062 0.87961 0.89394 0.93865 1.45975 1.17130 1.10058 1.62582 1.21758 0.89056 0.84685 0.76257 1.90709 1.24256 1.83777 1.48102 1.21561 0.97933 0.90150 1.06277 1.21559 0.98261 0.93491 1.01933 1.22248 0.95833 0.80739 1.02852 1.47212 1.44092 1.23304 1.07808 1.21364 0.94939 0.92212 0.80881 1.84887 1.39825 1.55046 1.44004 1.78231 1.15240 1.12614 1.12755 1.78230 1.23774 1.21711 0.95304 1.21363 0.92946 0.87674 0.87318 1.84984 1.51493 1.79046 1.08456 1.23393 0.80889 0.72273 0.87897 1.93060 1.81664 1.48494 1.97029 1.93375 1.69095 1.54672 1.96328 1.92984 1.74086 1.96141 1.55199 0.92280 0.74627 0.85395 0.84535 0.92066 0.93138 0.85316 0.85130 0.70394 0.70124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.64 9.50 21.44 0.20 -47.44 16 2 C 0.01 0.65 5.20 84.65 0.44 1.09 16 3 Si 0.98 38.93 29.54 68.60 2.03 40.96 16 4 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.29 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.56 -26.72 8.46 25.60 0.22 -26.51 16 8 H 0.10 4.11 7.74 -2.91 -0.02 4.09 16 9 C 0.25 11.84 2.21 44.25 0.10 11.94 16 10 H 0.04 2.41 7.58 -2.39 -0.02 2.39 16 11 N -0.71 -24.71 4.98 -446.09 -2.22 -26.93 16 12 C 0.49 15.98 7.36 87.66 0.65 16.62 16 13 O -0.59 -25.49 14.55 -3.03 -0.04 -25.53 16 14 C -0.12 -1.92 5.70 29.85 0.17 -1.74 16 15 C -0.11 -1.95 4.83 30.60 0.15 -1.80 16 16 C 0.10 0.99 6.01 86.38 0.52 1.51 16 17 N -0.50 -8.46 2.76 -755.19 -2.08 -10.54 16 18 C 0.42 8.41 9.15 179.71 1.65 10.05 16 19 O -0.43 -5.96 13.57 -89.44 -1.21 -7.17 16 20 N -0.34 -9.48 12.72 -173.65 -2.21 -11.69 16 21 N -0.35 -9.56 12.72 -173.66 -2.21 -11.77 16 22 C 0.42 8.53 9.15 179.71 1.65 10.18 16 23 O -0.44 -6.21 13.58 -89.39 -1.21 -7.42 16 24 C 0.41 20.56 2.81 71.98 0.20 20.77 16 25 F -0.22 -11.03 15.68 44.97 0.70 -10.32 16 26 F -0.15 -8.52 12.91 44.97 0.58 -7.94 16 27 F -0.20 -9.42 16.94 44.97 0.76 -8.66 16 28 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 29 H 0.42 11.38 8.54 -92.71 -0.79 10.58 16 30 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 33 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 34 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.43 2.24 9.06 -74.06 -0.67 1.57 16 37 H 0.44 0.72 9.06 -74.06 -0.67 0.05 16 Total: -1.00 -81.88 340.72 -2.13 -84.01 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -0.94 Total: 8.35 kcal Atomic # 6 Polarization: 36.38 SS G_CDS: 5.73 Total: 42.11 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -8.52 Total: -108.37 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -2.47 Total: -40.13 kcal Atomic # 9 Polarization: -28.97 SS G_CDS: 2.05 Total: -26.93 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -81.88 -2.13 -84.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362934107.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.074 kcal (2) G-P(sol) polarization free energy of solvation -81.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds