Wall clock time and date at job start Tue Mar 31 2020 21:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48496 * 109.46873 * 239.99977 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47271 * 119.99778 * 3 2 1 7 7 C 1.37867 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47066 * 60.00261 * 9 7 2 11 11 N 1.46504 * 109.47650 * 180.02562 * 9 7 2 12 12 C 1.34773 * 120.00111 * 205.00149 * 11 9 7 13 13 O 1.21277 * 120.00090 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99847 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.47014 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47184 * 179.97438 * 15 14 12 17 17 N 1.46493 * 109.47363 * 179.97438 * 16 15 14 18 18 C 1.36381 * 125.96261 * 269.68993 * 17 16 15 19 19 O 1.35623 * 125.98508 * 0.03429 * 18 17 16 20 20 N 1.30910 * 108.02073 * 179.88314 * 18 17 16 21 21 N 1.40114 * 107.93976 * 0.37362 * 20 18 17 22 22 C 1.30902 * 107.94242 * 359.76346 * 21 20 18 23 23 O 1.35631 * 125.99047 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47239 * 300.00370 * 9 7 2 25 25 F 1.39900 * 109.46764 * 299.99857 * 24 9 7 26 26 F 1.39895 * 109.46931 * 59.99600 * 24 9 7 27 27 F 1.39897 * 109.47129 * 179.97438 * 24 9 7 28 28 H 0.97006 * 120.00645 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99624 * 24.99831 * 11 9 7 30 30 H 1.08999 * 109.46659 * 299.99752 * 14 12 11 31 31 H 1.08988 * 109.47257 * 59.99966 * 14 12 11 32 32 H 1.09001 * 109.46901 * 300.00065 * 15 14 12 33 33 H 1.09002 * 109.47469 * 59.99902 * 15 14 12 34 34 H 1.09003 * 109.46779 * 300.00038 * 16 15 14 35 35 H 1.09002 * 109.46984 * 59.99622 * 16 15 14 36 36 H 0.96708 * 113.99687 * 90.00120 * 19 18 17 37 37 H 0.96708 * 113.99763 * 270.02662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8880 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8127 -0.4895 13 8 0.7196 -4.9706 -0.9337 14 6 2.8166 -5.9579 -0.4890 15 6 2.1545 -7.1955 -1.0980 16 6 3.1491 -8.3581 -1.0981 17 7 2.5150 -9.5433 -1.6806 18 6 1.8196 -10.4970 -0.9974 19 8 1.5937 -10.5139 0.3397 20 7 1.4058 -11.3916 -1.8590 21 7 1.8544 -11.0070 -3.1295 22 6 2.5220 -9.8885 -2.9999 23 8 3.1170 -9.1948 -4.0021 24 6 0.3719 -2.5793 1.2513 25 9 1.1766 -2.5044 2.3933 26 9 -0.5372 -1.5160 1.2509 27 9 -0.3280 -3.7907 1.2521 28 1 -0.4851 0.8400 -0.0004 29 1 3.0970 -3.4861 0.3576 30 1 3.6922 -5.6873 -1.0790 31 1 3.1211 -6.1750 0.5347 32 1 1.2786 -7.4663 -0.5084 33 1 1.8502 -6.9782 -2.1219 34 1 4.0247 -8.0870 -1.6880 35 1 3.4538 -8.5756 -0.0744 36 1 0.7821 -10.0611 0.6072 37 1 4.0340 -9.4528 -4.1686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362934108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:09 Heat of formation + Delta-G solvation = -166.382583 kcal Electronic energy + Delta-G solvation = -29742.239172 eV Core-core repulsion = 24722.310229 eV Total energy + Delta-G solvation = -5019.928943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.45192 -46.11143 -45.70845 -42.52149 -39.26404 -38.46047 -37.37121 -35.97432 -34.76260 -32.77636 -32.43355 -29.84202 -28.95448 -26.95016 -24.66298 -23.18007 -23.03150 -22.04968 -21.32021 -19.94829 -19.13843 -18.95415 -17.69115 -17.03736 -16.90275 -16.85313 -16.74784 -16.31091 -15.86561 -15.68859 -15.66266 -14.95734 -14.36234 -14.29375 -13.85158 -13.37017 -13.19943 -13.04153 -12.88325 -12.71246 -12.55272 -12.49749 -12.38738 -12.31219 -12.12021 -12.00423 -11.89610 -11.52132 -11.25327 -11.16906 -10.95001 -10.87847 -10.77185 -10.49703 -10.27676 -9.78004 -9.70714 -9.38873 -8.81256 -8.39948 -6.32265 -4.57316 1.24722 1.46098 1.96395 2.95201 3.03978 3.13466 3.18501 3.19939 3.41708 3.70238 4.10997 4.12826 4.44104 4.54872 4.65476 4.83738 4.85716 4.92526 4.98955 5.04766 5.24012 5.39576 5.45338 5.74305 5.76349 5.79614 5.84445 5.96877 6.11491 6.72497 6.82411 7.02368 7.03200 7.35978 7.53912 7.61933 8.17503 8.39486 8.73575 9.11137 10.59310 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.002598 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.303974 B =10773.183230 C =11419.903332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.245 3.755 10 H 0.085 0.915 11 N -0.711 5.711 12 C 0.503 3.497 13 O -0.536 6.536 14 C -0.136 4.136 15 C -0.119 4.119 16 C 0.100 3.900 17 N -0.509 5.509 18 C 0.408 3.592 19 O -0.438 6.438 20 N -0.299 5.299 21 N -0.299 5.299 22 C 0.408 3.592 23 O -0.433 6.433 24 C 0.417 3.583 25 F -0.209 7.209 26 F -0.136 7.136 27 F -0.219 7.219 28 H 0.270 0.730 29 H 0.399 0.601 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.415 0.585 37 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -12.986 -0.337 16.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.095 0.905 9 C 0.139 3.861 10 H 0.102 0.898 11 N -0.361 5.361 12 C 0.288 3.712 13 O -0.413 6.413 14 C -0.177 4.177 15 C -0.157 4.157 16 C -0.023 4.023 17 N -0.228 5.228 18 C 0.098 3.902 19 O -0.238 6.238 20 N -0.143 5.143 21 N -0.144 5.144 22 C 0.098 3.902 23 O -0.232 6.232 24 C 0.360 3.640 25 F -0.191 7.191 26 F -0.117 7.117 27 F -0.201 7.201 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.274 0.726 37 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 8.161 -14.235 -1.269 16.457 hybrid contribution 1.380 2.380 1.227 3.012 sum 9.541 -11.855 -0.042 15.217 Atomic orbital electron populations 1.70379 1.05895 1.27624 1.43291 1.25088 0.95163 1.00188 0.93960 0.86263 0.79353 0.81271 0.78923 1.19754 1.20815 1.19792 1.20828 0.93728 0.88126 1.56517 0.90486 1.19724 0.88765 0.85917 0.91689 0.89756 1.46091 1.17207 1.10652 1.62103 1.20455 0.88540 0.83964 0.78199 1.90724 1.21491 1.83036 1.46082 1.21531 0.99159 0.93681 1.03321 1.21661 0.97953 0.92233 1.03888 1.22066 0.96545 0.82985 1.00722 1.47162 1.45922 1.22172 1.07584 1.21336 0.95659 0.87545 0.85646 1.84907 1.48728 1.78131 1.12061 1.78362 1.20887 1.21081 0.93999 1.78352 1.15816 1.08228 1.12010 1.21320 0.98640 0.91192 0.79082 1.85011 1.32388 1.59688 1.46160 1.23158 0.80884 0.72788 0.87124 1.92988 1.74383 1.96182 1.55581 1.93407 1.68376 1.53775 1.96190 1.93063 1.81512 1.48508 1.96982 0.91956 0.76715 0.88606 0.88733 0.90548 0.89860 0.88341 0.87977 0.72556 0.73158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.41 9.50 55.43 0.53 -21.89 16 2 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 3 Si 0.92 19.39 29.54 -169.99 -5.02 14.37 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.56 -13.51 8.46 -34.45 -0.29 -13.81 16 8 H 0.08 1.75 7.74 -52.49 -0.41 1.34 16 9 C 0.24 5.75 2.21 -69.08 -0.15 5.60 16 10 H 0.08 2.25 7.58 -51.93 -0.39 1.86 16 11 N -0.71 -12.98 4.98 -54.93 -0.27 -13.25 16 12 C 0.50 8.50 7.36 -10.99 -0.08 8.42 16 13 O -0.54 -11.45 14.56 5.56 0.08 -11.37 16 14 C -0.14 -1.36 5.70 -27.88 -0.16 -1.52 16 15 C -0.12 -1.16 4.83 -26.73 -0.13 -1.29 16 16 C 0.10 0.67 6.01 -4.05 -0.02 0.65 16 17 N -0.51 -4.81 2.76 -120.06 -0.33 -5.14 16 18 C 0.41 4.42 9.15 -88.80 -0.81 3.60 16 19 O -0.44 -3.55 13.57 -18.57 -0.25 -3.80 16 20 N -0.30 -4.11 12.72 29.66 0.38 -3.74 16 21 N -0.30 -4.11 12.72 29.66 0.38 -3.73 16 22 C 0.41 4.36 9.15 -88.81 -0.81 3.55 16 23 O -0.43 -3.39 13.58 -18.59 -0.25 -3.64 16 24 C 0.42 10.24 2.81 37.16 0.10 10.34 16 25 F -0.21 -4.92 16.94 2.25 0.04 -4.89 16 26 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 27 F -0.22 -5.30 15.68 2.25 0.04 -5.26 16 28 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.40 6.04 8.54 -40.82 -0.35 5.69 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.73 8.14 -51.94 -0.42 0.31 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.42 1.59 9.06 45.56 0.41 2.01 16 37 H 0.41 0.79 9.06 45.56 0.41 1.20 16 LS Contribution 340.73 15.07 5.13 5.13 Total: -1.00 -35.55 340.73 -3.97 -39.52 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -1.99 Total: 4.23 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: -2.45 Total: 17.08 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.68 Total: -47.74 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.42 Total: -18.80 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 0.10 Total: -13.80 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.55 -3.97 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362934108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.862 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds