Wall clock time and date at job start Tue Mar 31 2020 21:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48496 * 109.46873 * 239.99977 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47271 * 119.99778 * 3 2 1 7 7 C 1.37867 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00380 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00258 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47066 * 60.00261 * 9 7 2 11 11 N 1.46504 * 109.47650 * 180.02562 * 9 7 2 12 12 C 1.34773 * 120.00111 * 205.00149 * 11 9 7 13 13 O 1.21277 * 120.00090 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99847 * 179.97438 * 12 11 9 15 15 C 1.53002 * 109.47014 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47184 * 179.97438 * 15 14 12 17 17 N 1.46493 * 109.47363 * 179.97438 * 16 15 14 18 18 C 1.36381 * 125.96261 * 269.68993 * 17 16 15 19 19 O 1.35623 * 125.98508 * 0.03429 * 18 17 16 20 20 N 1.30910 * 108.02073 * 179.88314 * 18 17 16 21 21 N 1.40114 * 107.93976 * 0.37362 * 20 18 17 22 22 C 1.30902 * 107.94242 * 359.76346 * 21 20 18 23 23 O 1.35631 * 125.99047 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47239 * 300.00370 * 9 7 2 25 25 F 1.39900 * 109.46764 * 299.99857 * 24 9 7 26 26 F 1.39895 * 109.46931 * 59.99600 * 24 9 7 27 27 F 1.39897 * 109.47129 * 179.97438 * 24 9 7 28 28 H 0.97006 * 120.00645 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99624 * 24.99831 * 11 9 7 30 30 H 1.08999 * 109.46659 * 299.99752 * 14 12 11 31 31 H 1.08988 * 109.47257 * 59.99966 * 14 12 11 32 32 H 1.09001 * 109.46901 * 300.00065 * 15 14 12 33 33 H 1.09002 * 109.47469 * 59.99902 * 15 14 12 34 34 H 1.09003 * 109.46779 * 300.00038 * 16 15 14 35 35 H 1.09002 * 109.46984 * 59.99622 * 16 15 14 36 36 H 0.96708 * 113.99687 * 90.00120 * 19 18 17 37 37 H 0.96708 * 113.99763 * 270.02662 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 1 0.6241 -2.5575 -0.8880 11 7 2.2031 -3.6126 0.0027 12 6 1.8370 -4.8127 -0.4895 13 8 0.7196 -4.9706 -0.9337 14 6 2.8166 -5.9579 -0.4890 15 6 2.1545 -7.1955 -1.0980 16 6 3.1491 -8.3581 -1.0981 17 7 2.5150 -9.5433 -1.6806 18 6 1.8196 -10.4970 -0.9974 19 8 1.5937 -10.5139 0.3397 20 7 1.4058 -11.3916 -1.8590 21 7 1.8544 -11.0070 -3.1295 22 6 2.5220 -9.8885 -2.9999 23 8 3.1170 -9.1948 -4.0021 24 6 0.3719 -2.5793 1.2513 25 9 1.1766 -2.5044 2.3933 26 9 -0.5372 -1.5160 1.2509 27 9 -0.3280 -3.7907 1.2521 28 1 -0.4851 0.8400 -0.0004 29 1 3.0970 -3.4861 0.3576 30 1 3.6922 -5.6873 -1.0790 31 1 3.1211 -6.1750 0.5347 32 1 1.2786 -7.4663 -0.5084 33 1 1.8502 -6.9782 -2.1219 34 1 4.0247 -8.0870 -1.6880 35 1 3.4538 -8.5756 -0.0744 36 1 0.7821 -10.0611 0.6072 37 1 4.0340 -9.4528 -4.1686 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362934108.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:08 Heat of formation + Delta-G solvation = -200.006962 kcal Electronic energy + Delta-G solvation = -29743.697235 eV Core-core repulsion = 24722.310229 eV Total energy + Delta-G solvation = -5021.387006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.42768 -48.06296 -47.74015 -43.29002 -40.64835 -39.10855 -38.02657 -36.88629 -36.31446 -34.46904 -33.41877 -30.66653 -30.54247 -27.93451 -26.57702 -24.26705 -23.81430 -23.09310 -22.55542 -21.36047 -19.85007 -19.67292 -19.25986 -18.86643 -18.67314 -18.28739 -17.67375 -17.61085 -17.13179 -16.86804 -16.60338 -16.36764 -15.78754 -15.17337 -14.98390 -14.91122 -14.85865 -14.49670 -14.43470 -14.29603 -14.03995 -13.95277 -13.86908 -13.61847 -13.34592 -13.18317 -12.98016 -12.88244 -12.73104 -12.60488 -12.33292 -12.22277 -11.92644 -11.60625 -11.49592 -11.07856 -10.79700 -10.68397 -10.53905 -10.03920 -8.22068 -6.53205 0.52443 0.76710 1.16105 1.46871 1.48440 1.57208 1.71927 2.21805 2.24526 2.40401 2.54049 2.92406 2.93950 3.53454 3.62029 3.78923 3.86880 3.90825 4.08134 4.13633 4.21034 4.33846 4.40907 4.48902 4.68650 4.72397 4.94647 5.05557 5.18620 5.35306 5.44042 5.55446 5.65089 6.25120 6.48216 6.52298 6.76860 6.81739 7.17209 7.42596 8.70275 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.002598 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.303974 B =10773.183230 C =11419.903332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.013 3.987 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.562 4.562 8 H 0.096 0.904 9 C 0.251 3.749 10 H 0.042 0.958 11 N -0.706 5.706 12 C 0.494 3.506 13 O -0.588 6.588 14 C -0.119 4.119 15 C -0.113 4.113 16 C 0.105 3.895 17 N -0.505 5.505 18 C 0.416 3.584 19 O -0.435 6.435 20 N -0.344 5.344 21 N -0.346 5.346 22 C 0.419 3.581 23 O -0.435 6.435 24 C 0.413 3.587 25 F -0.202 7.202 26 F -0.153 7.153 27 F -0.220 7.220 28 H 0.268 0.732 29 H 0.417 0.583 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.131 0.869 35 H 0.128 0.872 36 H 0.433 0.567 37 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.154 -12.827 0.377 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.192 4.192 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.598 4.598 8 H 0.114 0.886 9 C 0.143 3.857 10 H 0.060 0.940 11 N -0.357 5.357 12 C 0.282 3.718 13 O -0.469 6.469 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.017 4.017 17 N -0.224 5.224 18 C 0.105 3.895 19 O -0.239 6.239 20 N -0.188 5.188 21 N -0.190 5.190 22 C 0.108 3.892 23 O -0.239 6.239 24 C 0.357 3.643 25 F -0.184 7.184 26 F -0.135 7.135 27 F -0.202 7.202 28 H 0.077 0.923 29 H 0.254 0.746 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.296 0.704 37 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 11.502 -14.093 -0.543 18.199 hybrid contribution 0.339 2.331 1.014 2.565 sum 11.842 -11.761 0.470 16.696 Atomic orbital electron populations 1.70529 1.07584 1.28179 1.44771 1.26016 0.95844 1.03814 0.93520 0.85234 0.77997 0.76805 0.79453 1.18585 1.21375 1.18888 1.21235 0.94651 0.88359 1.55596 0.88648 1.19252 0.89086 0.87939 0.89422 0.93981 1.45974 1.17107 1.10034 1.62631 1.21757 0.89072 0.84716 0.76213 1.90708 1.24317 1.83822 1.48004 1.21559 0.97893 0.90182 1.06284 1.21557 0.98381 0.93566 1.01736 1.22248 0.95998 0.80601 1.02826 1.47216 1.45697 1.22472 1.07040 1.21373 0.94700 0.87215 0.86204 1.84883 1.49940 1.78588 1.10442 1.78234 1.22816 1.23065 0.94707 1.78228 1.17831 1.10426 1.12545 1.21354 0.97582 0.90365 0.79898 1.84984 1.34445 1.59206 1.45237 1.23346 0.80844 0.72296 0.87854 1.92987 1.74034 1.96141 1.55212 1.93373 1.69086 1.54693 1.96326 1.93055 1.81638 1.48432 1.97029 0.92262 0.74630 0.84818 0.85113 0.92465 0.92745 0.85059 0.85384 0.70439 0.70098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.72 9.50 21.44 0.20 -47.51 16 2 C 0.01 0.66 5.20 84.65 0.44 1.10 16 3 Si 0.98 39.00 29.54 68.60 2.03 41.03 16 4 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 5 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 7 C -0.56 -26.90 8.46 25.60 0.22 -26.68 16 8 H 0.10 4.10 7.74 -2.91 -0.02 4.08 16 9 C 0.25 11.85 2.21 44.25 0.10 11.95 16 10 H 0.04 2.35 7.58 -2.39 -0.02 2.34 16 11 N -0.71 -24.74 4.98 -446.09 -2.22 -26.96 16 12 C 0.49 15.99 7.36 87.66 0.65 16.64 16 13 O -0.59 -25.51 14.56 -3.02 -0.04 -25.56 16 14 C -0.12 -1.92 5.70 29.85 0.17 -1.75 16 15 C -0.11 -1.95 4.83 30.59 0.15 -1.80 16 16 C 0.10 0.99 6.01 86.38 0.52 1.51 16 17 N -0.50 -8.46 2.76 -755.18 -2.08 -10.55 16 18 C 0.42 8.52 9.15 179.71 1.65 10.17 16 19 O -0.44 -6.26 13.57 -89.35 -1.21 -7.48 16 20 N -0.34 -9.52 12.72 -173.65 -2.21 -11.73 16 21 N -0.35 -9.52 12.72 -173.66 -2.21 -11.73 16 22 C 0.42 8.43 9.15 179.72 1.65 10.07 16 23 O -0.43 -5.91 13.58 -89.44 -1.21 -7.12 16 24 C 0.41 20.47 2.81 71.98 0.20 20.67 16 25 F -0.20 -9.33 16.94 44.97 0.76 -8.56 16 26 F -0.15 -8.49 12.91 44.97 0.58 -7.91 16 27 F -0.22 -10.80 15.68 44.97 0.71 -10.09 16 28 H 0.27 13.92 8.31 -92.70 -0.77 13.15 16 29 H 0.42 11.39 8.54 -92.71 -0.79 10.60 16 30 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.13 1.28 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.43 2.64 9.06 -74.05 -0.67 1.97 16 37 H 0.44 0.45 9.06 -74.05 -0.67 -0.23 16 Total: -1.00 -81.62 340.73 -2.13 -83.75 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.94 Total: 8.53 kcal Atomic # 6 Polarization: 36.15 SS G_CDS: 5.73 Total: 41.88 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -8.52 Total: -108.48 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -2.47 Total: -40.15 kcal Atomic # 9 Polarization: -28.61 SS G_CDS: 2.05 Total: -26.56 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -81.62 -2.13 -83.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362934108.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.261 kcal (2) G-P(sol) polarization free energy of solvation -81.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds