Wall clock time and date at job start Tue Mar 31 2020 20:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86800 * 120.00198 * 2 1 4 4 H 1.48500 * 109.47179 * 89.99787 * 3 2 1 5 5 H 1.48500 * 109.47486 * 210.00154 * 3 2 1 6 6 H 1.48508 * 109.46605 * 330.00166 * 3 2 1 7 7 C 1.40038 * 120.00194 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99592 * 15.96687 * 7 2 1 9 9 C 1.41329 * 119.99792 * 195.95928 * 7 2 1 10 10 C 1.40614 * 119.78416 * 188.66048 * 9 7 2 11 11 C 1.38313 * 119.12857 * 179.73133 * 10 9 7 12 12 C 1.38690 * 118.67009 * 0.53680 * 11 10 9 13 13 C 1.39647 * 119.49572 * 359.72624 * 12 11 10 14 14 N 1.39249 * 119.57454 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00081 * 18.79051 * 14 13 12 16 16 O 1.21577 * 120.00140 * 5.78879 * 15 14 13 17 17 N 1.34773 * 120.00233 * 185.79003 * 15 14 13 18 18 C 1.46503 * 120.00200 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.46926 * 180.02562 * 18 17 15 20 20 C 1.41376 * 126.80594 * 94.99824 * 19 18 17 21 21 C 1.35444 * 103.99007 * 179.97438 * 20 19 18 22 22 C 1.50700 * 126.77966 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47015 * 299.99868 * 22 21 20 24 24 F 1.39891 * 109.47421 * 60.00083 * 22 21 20 25 25 O 1.34037 * 106.44372 * 0.02562 * 21 20 19 26 26 N 1.20918 * 111.57091 * 359.70868 * 25 21 20 27 27 N 1.31927 * 120.85212 * 0.02562 * 13 12 11 28 28 H 0.97003 * 119.99756 * 174.93028 * 1 2 3 29 29 H 1.08002 * 120.43377 * 0.02562 * 10 9 7 30 30 H 1.08000 * 120.66626 * 180.26514 * 11 10 9 31 31 H 1.07997 * 120.25154 * 179.74886 * 12 11 10 32 32 H 0.97000 * 120.00437 * 198.78853 * 14 13 12 33 33 H 0.97008 * 119.99679 * 359.97438 * 17 15 14 34 34 H 1.08995 * 109.46670 * 299.99742 * 18 17 15 35 35 H 1.08991 * 109.47249 * 59.99898 * 18 17 15 36 36 H 1.08002 * 128.00177 * 0.04248 * 20 19 18 37 37 H 1.08998 * 109.47225 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4889 2.0464 1.4001 5 1 3.5390 1.4402 -0.7001 6 1 1.4388 2.6526 -0.7001 7 6 2.0076 -1.2127 0.0005 8 1 1.4988 -2.1301 -0.2563 9 6 3.3801 -1.2361 0.3371 10 6 4.1223 -2.4173 0.1614 11 6 5.4659 -2.4234 0.4899 12 6 6.0329 -1.2623 0.9937 13 6 5.2415 -0.1225 1.1504 14 7 5.8090 1.0440 1.6565 15 6 7.1470 1.2057 1.6377 16 8 7.8510 0.3828 1.0852 17 7 7.7044 2.2795 2.2314 18 6 9.1588 2.4550 2.2115 19 6 9.5216 3.7238 2.9392 20 6 9.9039 3.8429 4.2951 21 6 10.1223 5.1696 4.4583 22 6 10.5552 5.8637 5.7240 23 9 9.6038 5.6429 6.7257 24 9 11.7919 5.3553 6.1352 25 8 9.8764 5.7434 3.2722 26 7 9.5504 4.9267 2.4423 27 7 3.9628 -0.1369 0.8260 28 1 -0.4850 -0.8368 -0.0742 29 1 3.6506 -3.3068 -0.2294 30 1 6.0605 -3.3157 0.3609 31 1 7.0787 -1.2397 1.2623 32 1 5.2415 1.7403 2.0226 33 1 7.1426 2.9363 2.6720 34 1 9.6338 1.6061 2.7032 35 1 9.5032 2.5164 1.1793 36 1 10.0005 3.0576 5.0301 37 1 10.6454 6.9340 5.5388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364162069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:35 Heat of formation + Delta-G solvation = -47.949621 kcal Electronic energy + Delta-G solvation = -27490.801015 eV Core-core repulsion = 22906.776935 eV Total energy + Delta-G solvation = -4584.024080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.14571 -48.16070 -46.35338 -41.85907 -40.10551 -37.19774 -36.19424 -35.42019 -34.68431 -33.78566 -32.93772 -31.34203 -28.59078 -27.79644 -27.18694 -24.54206 -23.96320 -23.53155 -22.00359 -21.86082 -20.55476 -19.70729 -19.36179 -19.12103 -18.47789 -18.34541 -18.04883 -17.34642 -17.06275 -16.84051 -16.59303 -16.22666 -15.82235 -15.52544 -15.03341 -15.01951 -14.95261 -14.70295 -14.50564 -14.36215 -14.23719 -14.16036 -13.87937 -13.70477 -13.00798 -12.79839 -12.65471 -12.42257 -12.18334 -11.86610 -11.72685 -11.58923 -11.10038 -11.04726 -10.98119 -10.40151 -10.37411 -9.83667 -9.31435 -9.16938 -6.78354 -0.02516 0.56619 0.64724 0.79418 1.33240 1.47009 1.53223 1.64539 1.93984 1.97724 2.39030 2.64445 2.69979 2.86081 3.00283 3.04469 3.57050 3.59146 3.60264 3.83117 3.90624 4.08724 4.16395 4.38393 4.46660 4.49425 4.66194 4.71009 4.71972 4.79344 5.13298 5.33676 5.38159 5.44641 5.62035 5.78567 5.92534 6.03068 6.42414 6.59421 6.75555 6.86489 7.27546 7.54839 7.93806 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002335 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.327948 B =11987.058069 C =12815.480936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.022 3.978 3 Si 1.175 2.825 4 H -0.273 1.273 5 H -0.293 1.293 6 H -0.322 1.322 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.259 3.741 10 C -0.295 4.295 11 C -0.029 4.029 12 C -0.306 4.306 13 C 0.390 3.610 14 N -0.662 5.662 15 C 0.716 3.284 16 O -0.590 6.590 17 N -0.723 5.723 18 C 0.222 3.778 19 C -0.007 4.007 20 C -0.159 4.159 21 C -0.121 4.121 22 C 0.368 3.632 23 F -0.191 7.191 24 F -0.190 7.190 25 O 0.142 5.858 26 N -0.350 5.350 27 N -0.610 5.610 28 H 0.282 0.718 29 H 0.114 0.886 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.415 0.585 33 H 0.411 0.589 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.202 0.798 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.392 14.396 13.222 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.196 4.196 3 Si 1.006 2.994 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.255 1.255 7 C -0.545 4.545 8 H 0.087 0.913 9 C 0.134 3.866 10 C -0.317 4.317 11 C -0.053 4.053 12 C -0.330 4.330 13 C 0.158 3.842 14 N -0.310 5.310 15 C 0.416 3.584 16 O -0.468 6.468 17 N -0.380 5.380 18 C 0.098 3.902 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.186 4.186 22 C 0.313 3.687 23 F -0.172 7.172 24 F -0.171 7.171 25 O 0.065 5.935 26 N -0.046 5.046 27 N -0.335 5.335 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.168 0.832 32 H 0.252 0.748 33 H 0.247 0.753 34 H 0.128 0.872 35 H 0.100 0.900 36 H 0.219 0.781 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 22.032 16.376 11.721 29.850 hybrid contribution -0.461 -2.928 0.592 3.023 sum 21.572 13.448 12.313 28.246 Atomic orbital electron populations 1.70635 1.08500 1.32931 1.32815 1.28395 0.95492 1.07664 0.88053 0.81709 0.71404 0.68379 0.77938 1.19888 1.22105 1.25479 1.20641 0.94122 0.96724 1.43027 0.91259 1.18364 0.92988 0.87305 0.87959 1.21776 0.95641 0.99547 1.14783 1.21327 0.93731 0.97565 0.92705 1.21876 1.02392 0.92760 1.16003 1.18071 0.89010 0.85405 0.91731 1.42213 1.06278 1.19661 1.62886 1.15626 0.80972 0.82449 0.79363 1.90836 1.61582 1.44663 1.49729 1.44844 1.08042 1.25112 1.60046 1.19366 0.78990 0.91345 1.00520 1.23496 1.05111 0.94012 0.93781 1.22920 1.01408 0.97287 0.96401 1.25234 1.07935 0.94086 0.91346 1.19539 0.71971 1.00195 0.76969 1.93086 1.65205 1.96577 1.62354 1.93078 1.43117 1.90183 1.90737 1.84866 1.61279 1.32678 1.14726 1.73950 1.14907 1.01228 1.14482 1.66102 1.11338 1.30250 1.25800 0.90702 0.86770 0.83884 0.83152 0.74839 0.75277 0.87151 0.90034 0.78131 0.79798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.77 13.65 21.84 0.30 -45.47 16 2 C 0.02 1.19 5.51 85.29 0.47 1.66 16 3 Si 1.18 56.25 25.93 68.60 1.78 58.03 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.29 -14.51 6.55 99.48 0.65 -13.86 16 6 H -0.32 -15.01 7.11 99.48 0.71 -14.31 16 7 C -0.51 -28.70 9.51 23.47 0.22 -28.47 16 8 H 0.07 3.93 8.06 -2.91 -0.02 3.91 16 9 C 0.26 13.74 6.27 40.20 0.25 14.00 16 10 C -0.30 -14.00 9.83 22.87 0.22 -13.77 16 11 C -0.03 -1.22 10.15 22.40 0.23 -0.99 16 12 C -0.31 -13.23 8.83 22.72 0.20 -13.03 16 13 C 0.39 17.42 7.51 133.24 1.00 18.42 16 14 N -0.66 -23.31 5.42 -322.13 -1.75 -25.06 16 15 C 0.72 22.43 8.40 179.05 1.50 23.93 16 16 O -0.59 -22.12 13.14 -3.96 -0.05 -22.18 16 17 N -0.72 -15.49 5.55 -482.32 -2.68 -18.17 16 18 C 0.22 3.99 6.26 85.63 0.54 4.53 16 19 C -0.01 -0.11 6.70 43.58 0.29 0.18 16 20 C -0.16 -1.82 11.05 22.40 0.25 -1.57 16 21 C -0.12 -1.21 6.92 25.04 0.17 -1.04 16 22 C 0.37 1.89 5.80 71.24 0.41 2.31 16 23 F -0.19 -1.82 17.32 44.97 0.78 -1.04 16 24 F -0.19 -1.69 17.32 44.97 0.78 -0.91 16 25 O 0.14 1.93 11.20 71.66 0.80 2.73 16 26 N -0.35 -6.30 12.07 -49.57 -0.60 -6.90 16 27 N -0.61 -30.61 5.07 -186.37 -0.95 -31.55 16 28 H 0.28 15.16 8.73 -92.71 -0.81 14.35 16 29 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 30 H 0.14 4.87 8.06 -2.91 -0.02 4.84 16 31 H 0.15 6.28 5.33 -3.19 -0.02 6.26 16 32 H 0.41 12.57 8.84 -92.71 -0.82 11.75 16 33 H 0.41 7.03 8.49 -92.70 -0.79 6.24 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.72 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.19 -0.62 8.14 -2.39 -0.02 -0.64 16 Total: -1.00 -71.03 338.22 3.66 -67.36 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.52 Total: 17.00 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.76 Total: 6.15 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.67 Total: -127.15 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: 0.75 Total: -19.44 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 1.56 Total: -1.95 kcal Atomic # 14 Polarization: 56.25 SS G_CDS: 1.78 Total: 58.03 kcal Total: -71.03 3.66 -67.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364162069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.412 kcal (2) G-P(sol) polarization free energy of solvation -71.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds