Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47189 * 269.99565 * 3 2 1 5 5 H 1.48493 * 109.47571 * 30.00188 * 3 2 1 6 6 H 1.48510 * 109.46829 * 150.00392 * 3 2 1 7 7 C 1.39898 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 175.55770 * 7 2 1 9 9 C 1.41159 * 119.99529 * 355.55800 * 7 2 1 10 10 C 1.40864 * 120.16074 * 214.78381 * 9 7 2 11 11 C 1.36380 * 119.82685 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16872 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83207 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99928 * 144.77267 * 13 12 11 15 15 O 1.21578 * 120.00140 * 4.02302 * 14 13 12 16 16 N 1.34779 * 120.00129 * 184.02774 * 14 13 12 17 17 C 1.46497 * 120.00052 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46892 * 179.97438 * 17 16 14 19 19 N 1.31134 * 126.55098 * 89.71728 * 18 17 16 20 20 C 1.34493 * 105.61754 * 179.91339 * 19 18 17 21 21 C 1.50696 * 126.28921 * 180.12391 * 20 19 18 22 22 F 1.39900 * 109.47140 * 300.24660 * 21 20 19 23 23 F 1.39901 * 109.46917 * 60.24172 * 21 20 19 24 24 N 1.29945 * 107.42297 * 0.35330 * 20 19 18 25 25 O 1.21302 * 110.25160 * 359.77184 * 24 20 19 26 26 C 1.39486 * 120.33228 * 0.27042 * 12 11 10 27 27 C 1.36377 * 120.16493 * 359.45078 * 26 12 11 28 28 H 0.97009 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.08998 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.91621 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00337 * 324.48844 * 13 12 11 32 32 H 0.97005 * 119.99935 * 359.97438 * 16 14 13 33 33 H 1.08996 * 109.47745 * 299.99997 * 17 16 14 34 34 H 1.09005 * 109.46686 * 60.00508 * 17 16 14 35 35 H 1.09001 * 109.47550 * 180.23922 * 21 20 19 36 36 H 1.07997 * 119.91433 * 179.70189 * 26 12 11 37 37 H 1.08003 * 120.08206 * 180.27107 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3056 -2.4321 0.0958 10 6 1.8649 -3.5178 0.7977 11 6 1.1803 -4.6941 0.8850 12 6 -0.0702 -4.8238 0.2810 13 7 -0.7633 -6.0278 0.3750 14 6 -2.1074 -6.0257 0.4734 15 8 -2.7202 -4.9777 0.4065 16 7 -2.7724 -7.1853 0.6459 17 6 -4.2334 -7.1829 0.7534 18 6 -4.7256 -8.5950 0.9395 19 7 -4.8988 -9.2177 2.0805 20 6 -5.3483 -10.4439 1.7593 21 6 -5.7019 -11.5455 2.7248 22 9 -4.5777 -11.8735 3.4902 23 9 -6.7306 -11.1134 3.5688 24 7 -5.4170 -10.5059 0.4631 25 8 -5.0637 -9.4540 -0.0269 26 6 -0.6277 -3.7552 -0.4210 27 6 0.0425 -2.5709 -0.5120 28 1 -0.4850 0.8401 -0.0004 29 1 2.8337 -3.4193 1.2649 30 1 1.6079 -5.5275 1.4225 31 1 -0.2790 -6.8682 0.3655 32 1 -2.2835 -8.0214 0.6990 33 1 -4.5339 -6.5773 1.6084 34 1 -4.6639 -6.7654 -0.1568 35 1 -6.0322 -12.4234 2.1695 36 1 -1.5943 -3.8646 -0.8901 37 1 -0.3924 -1.7429 -1.0522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364998404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -21.749933 kcal Electronic energy + Delta-G solvation = -27074.666953 eV Core-core repulsion = 22491.778977 eV Total energy + Delta-G solvation = -4582.887976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.71154 -47.73179 -46.43194 -40.08805 -37.61421 -36.73574 -35.53972 -34.42948 -33.27156 -32.72373 -29.53160 -29.21371 -28.55465 -27.69089 -24.85382 -24.21038 -22.62366 -21.62973 -21.12405 -20.24188 -19.03502 -18.93959 -18.27693 -17.86000 -17.73344 -17.28535 -17.16128 -16.84372 -15.62298 -15.29290 -15.15666 -14.71245 -14.58303 -14.09160 -14.06175 -13.94870 -13.75075 -13.56484 -13.13908 -12.84301 -12.65504 -12.58733 -12.28121 -12.10689 -11.84952 -11.74339 -11.45713 -11.16724 -11.03514 -10.93368 -10.50290 -10.06608 -9.91240 -9.67570 -9.34211 -9.05730 -8.80062 -7.51490 -6.88677 -6.58171 -4.32107 0.23349 1.22615 1.92309 2.19363 2.64501 2.84326 2.99187 3.05400 3.11706 3.12420 3.18027 3.27601 3.56543 3.93992 3.99927 4.13556 4.15898 4.43635 4.65173 4.73694 4.89596 5.15004 5.17376 5.66011 6.09683 6.12965 6.36281 6.65978 6.77059 7.04670 7.12547 7.25701 7.26158 7.33179 7.65320 7.77418 7.98739 8.10308 8.27230 8.36909 8.68390 8.84580 8.94832 9.03468 10.32718 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.001806 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.485990 B =15500.698599 C =15737.333807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.075 0.925 9 C 0.099 3.901 10 C -0.203 4.203 11 C -0.113 4.113 12 C 0.019 3.981 13 N -0.662 5.662 14 C 0.701 3.299 15 O -0.566 6.566 16 N -0.752 5.752 17 C 0.237 3.763 18 C 0.184 3.816 19 N -0.436 5.436 20 C 0.089 3.911 21 C 0.380 3.620 22 F -0.178 7.178 23 F -0.178 7.178 24 N -0.341 5.341 25 O 0.110 5.890 26 C -0.093 4.093 27 C -0.144 4.144 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.392 0.608 32 H 0.397 0.603 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.109 0.891 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 -20.355 1.074 22.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.147 4.147 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.093 0.907 9 C 0.097 3.903 10 C -0.224 4.224 11 C -0.134 4.134 12 C -0.073 4.073 13 N -0.307 5.307 14 C 0.402 3.598 15 O -0.442 6.442 16 N -0.413 5.413 17 C 0.111 3.889 18 C -0.037 4.037 19 N -0.169 5.169 20 C -0.186 4.186 21 C 0.324 3.676 22 F -0.159 7.159 23 F -0.159 7.159 24 N -0.042 5.042 25 O 0.041 5.959 26 C -0.113 4.113 27 C -0.164 4.164 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.226 0.774 32 H 0.231 0.769 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.429 -20.002 1.131 23.065 hybrid contribution 0.805 0.016 0.297 0.858 sum -10.624 -19.986 1.427 22.679 Atomic orbital electron populations 1.69789 1.07220 1.28738 1.37677 1.25889 0.94940 1.01151 0.92688 0.86210 0.80175 0.80622 0.79019 1.19559 1.20320 1.18793 1.19471 0.94638 0.90233 1.45014 0.90671 1.17735 0.92289 0.91866 0.88448 1.20680 1.01152 0.94573 1.05949 1.20051 0.95056 0.97532 1.00739 1.17057 0.94717 0.86311 1.09214 1.42031 1.03985 1.08740 1.75973 1.15808 0.82422 0.83011 0.78565 1.90980 1.66984 1.29466 1.56735 1.44923 1.05261 1.09315 1.81786 1.19483 0.81074 0.81818 1.06559 1.28979 0.96403 0.97218 0.81114 1.71991 1.15634 1.03329 1.25976 1.26421 1.04673 0.96014 0.91460 1.19196 0.75019 0.91513 0.81871 1.93097 1.52788 1.92753 1.77282 1.93095 1.58373 1.91492 1.72985 1.74649 1.15693 1.03413 1.10432 1.85375 1.58003 1.16241 1.36232 1.20656 0.99054 0.93240 0.98320 1.21307 0.96978 0.96021 1.02053 0.91084 0.88523 0.89181 0.77445 0.76941 0.86242 0.87019 0.83662 0.87307 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.33 10.60 55.55 0.59 -20.74 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.91 18.99 29.56 -169.99 -5.03 13.97 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.21 9.02 -37.85 -0.34 -12.56 16 8 H 0.08 1.89 7.85 -52.49 -0.41 1.48 16 9 C 0.10 2.62 5.55 -106.80 -0.59 2.03 16 10 C -0.20 -4.82 9.74 -39.26 -0.38 -5.21 16 11 C -0.11 -2.40 9.90 -39.79 -0.39 -2.79 16 12 C 0.02 0.41 6.30 -83.57 -0.53 -0.11 16 13 N -0.66 -10.76 5.31 -14.10 -0.07 -10.84 16 14 C 0.70 11.23 8.39 -86.92 -0.73 10.50 16 15 O -0.57 -11.60 13.78 5.30 0.07 -11.52 16 16 N -0.75 -8.03 5.55 -66.42 -0.37 -8.40 16 17 C 0.24 2.12 6.30 -5.19 -0.03 2.09 16 18 C 0.18 1.62 7.88 -13.05 -0.10 1.52 16 19 N -0.44 -4.61 11.55 -9.87 -0.11 -4.72 16 20 C 0.09 0.83 7.65 -156.38 -1.20 -0.37 16 21 C 0.38 2.68 5.86 36.00 0.21 2.89 16 22 F -0.18 -1.56 17.32 2.25 0.04 -1.52 16 23 F -0.18 -1.55 17.32 2.25 0.04 -1.51 16 24 N -0.34 -3.13 12.16 30.90 0.38 -2.75 16 25 O 0.11 0.95 11.31 18.10 0.20 1.16 16 26 C -0.09 -2.23 8.61 -39.79 -0.34 -2.57 16 27 C -0.14 -3.77 8.62 -39.26 -0.34 -4.11 16 28 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 29 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 30 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.39 4.81 8.83 -40.82 -0.36 4.45 16 32 H 0.40 3.26 8.48 -40.82 -0.35 2.91 16 33 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.15 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.11 2.61 6.24 -52.49 -0.33 2.29 16 37 H 0.13 3.60 6.14 -52.48 -0.32 3.28 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -32.32 341.40 -7.00 -39.32 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -3.02 Total: 9.47 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -4.86 Total: -7.05 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.41 Total: -47.46 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.28 Total: -10.37 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.32 -7.00 -39.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364998404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.572 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds