Wall clock time and date at job start Tue Mar 31 2020 20:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86802 * 119.99915 * 2 1 4 4 H 1.48498 * 109.47189 * 269.99565 * 3 2 1 5 5 H 1.48493 * 109.47571 * 30.00188 * 3 2 1 6 6 H 1.48510 * 109.46829 * 150.00392 * 3 2 1 7 7 C 1.39898 * 120.00233 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00380 * 175.55770 * 7 2 1 9 9 C 1.41159 * 119.99529 * 355.55800 * 7 2 1 10 10 C 1.40864 * 120.16074 * 214.78381 * 9 7 2 11 11 C 1.36380 * 119.82685 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16872 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83207 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99928 * 144.77267 * 13 12 11 15 15 O 1.21578 * 120.00140 * 4.02302 * 14 13 12 16 16 N 1.34779 * 120.00129 * 184.02774 * 14 13 12 17 17 C 1.46497 * 120.00052 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.46892 * 179.97438 * 17 16 14 19 19 N 1.31134 * 126.55098 * 89.71728 * 18 17 16 20 20 C 1.34493 * 105.61754 * 179.91339 * 19 18 17 21 21 C 1.50696 * 126.28921 * 180.12391 * 20 19 18 22 22 F 1.39900 * 109.47140 * 300.24660 * 21 20 19 23 23 F 1.39901 * 109.46917 * 60.24172 * 21 20 19 24 24 N 1.29945 * 107.42297 * 0.35330 * 20 19 18 25 25 O 1.21302 * 110.25160 * 359.77184 * 24 20 19 26 26 C 1.39486 * 120.33228 * 0.27042 * 12 11 10 27 27 C 1.36377 * 120.16493 * 359.45078 * 26 12 11 28 28 H 0.97009 * 119.99962 * 0.02562 * 1 2 3 29 29 H 1.08003 * 120.08998 * 359.97438 * 10 9 7 30 30 H 1.07995 * 119.91621 * 179.97438 * 11 10 9 31 31 H 0.97000 * 120.00337 * 324.48844 * 13 12 11 32 32 H 0.97005 * 119.99935 * 359.97438 * 16 14 13 33 33 H 1.08996 * 109.47745 * 299.99997 * 17 16 14 34 34 H 1.09005 * 109.46686 * 60.00508 * 17 16 14 35 35 H 1.09001 * 109.47550 * 180.23922 * 21 20 19 36 36 H 1.07997 * 119.91433 * 179.70189 * 26 12 11 37 37 H 1.08003 * 120.08206 * 180.27107 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0858 -1.2130 -0.0719 9 6 1.3056 -2.4321 0.0958 10 6 1.8649 -3.5178 0.7977 11 6 1.1803 -4.6941 0.8850 12 6 -0.0702 -4.8238 0.2810 13 7 -0.7633 -6.0278 0.3750 14 6 -2.1074 -6.0257 0.4734 15 8 -2.7202 -4.9777 0.4065 16 7 -2.7724 -7.1853 0.6459 17 6 -4.2334 -7.1829 0.7534 18 6 -4.7256 -8.5950 0.9395 19 7 -4.8988 -9.2177 2.0805 20 6 -5.3483 -10.4439 1.7593 21 6 -5.7019 -11.5455 2.7248 22 9 -4.5777 -11.8735 3.4902 23 9 -6.7306 -11.1134 3.5688 24 7 -5.4170 -10.5059 0.4631 25 8 -5.0637 -9.4540 -0.0269 26 6 -0.6277 -3.7552 -0.4210 27 6 0.0425 -2.5709 -0.5120 28 1 -0.4850 0.8401 -0.0004 29 1 2.8337 -3.4193 1.2649 30 1 1.6079 -5.5275 1.4225 31 1 -0.2790 -6.8682 0.3655 32 1 -2.2835 -8.0214 0.6990 33 1 -4.5339 -6.5773 1.6084 34 1 -4.6639 -6.7654 -0.1568 35 1 -6.0322 -12.4234 2.1695 36 1 -1.5943 -3.8646 -0.8901 37 1 -0.3924 -1.7429 -1.0522 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364998404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:22 Heat of formation + Delta-G solvation = -45.356378 kcal Electronic energy + Delta-G solvation = -27075.690606 eV Core-core repulsion = 22491.778977 eV Total energy + Delta-G solvation = -4583.911628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.30598 -48.33951 -47.14437 -41.45802 -39.28079 -37.52180 -36.63534 -36.00471 -34.72912 -33.87395 -31.36785 -30.85357 -29.26283 -28.71761 -26.54677 -24.97793 -23.51683 -23.12185 -22.77667 -21.71370 -19.92945 -19.71133 -19.25281 -19.15670 -18.63609 -18.36556 -18.17559 -17.77315 -17.07616 -16.66546 -16.41811 -15.95489 -15.69276 -15.20385 -15.11044 -14.93743 -14.68020 -14.52010 -14.47125 -14.21990 -13.91901 -13.76300 -13.52108 -13.33412 -13.26142 -12.83747 -12.81710 -12.62407 -12.58832 -12.27894 -11.85344 -11.71252 -11.66134 -11.31061 -10.90856 -10.53572 -10.32454 -9.38362 -8.67483 -8.45024 -6.27528 -0.48392 0.48935 0.90637 1.16882 1.19639 1.41373 1.49173 1.56097 1.58064 1.81664 2.15200 2.26510 2.28821 2.83006 2.86981 3.27769 3.31125 3.59394 3.60246 3.75020 3.93554 4.17840 4.42407 4.44236 4.49228 4.55068 5.02119 5.12648 5.17300 5.20548 5.37656 5.47403 5.71681 5.80885 6.09781 6.15947 6.20606 6.43026 6.55830 6.77146 7.01453 7.04547 7.08235 7.59263 8.47685 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.030511 B = 0.001806 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.485990 B =15500.698599 C =15737.333807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.022 3.978 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.497 4.497 8 H 0.077 0.923 9 C 0.063 3.937 10 C -0.210 4.210 11 C -0.109 4.109 12 C 0.041 3.959 13 N -0.654 5.654 14 C 0.704 3.296 15 O -0.612 6.612 16 N -0.729 5.729 17 C 0.238 3.762 18 C 0.197 3.803 19 N -0.462 5.462 20 C 0.082 3.918 21 C 0.377 3.623 22 F -0.189 7.189 23 F -0.190 7.190 24 N -0.342 5.342 25 O 0.114 5.886 26 C -0.106 4.106 27 C -0.167 4.167 28 H 0.281 0.719 29 H 0.110 0.890 30 H 0.135 0.865 31 H 0.416 0.584 32 H 0.413 0.587 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.192 0.808 36 H 0.103 0.897 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 -22.538 1.579 24.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.189 4.189 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.060 3.940 10 C -0.229 4.229 11 C -0.129 4.129 12 C -0.053 4.053 13 N -0.302 5.302 14 C 0.404 3.596 15 O -0.491 6.491 16 N -0.389 5.389 17 C 0.113 3.887 18 C -0.024 4.024 19 N -0.195 5.195 20 C -0.192 4.192 21 C 0.322 3.678 22 F -0.170 7.170 23 F -0.171 7.171 24 N -0.042 5.042 25 O 0.046 5.954 26 C -0.126 4.126 27 C -0.187 4.187 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.152 0.848 31 H 0.254 0.746 32 H 0.250 0.750 33 H 0.135 0.865 34 H 0.145 0.855 35 H 0.208 0.792 36 H 0.121 0.879 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.166 -22.291 1.637 24.985 hybrid contribution 0.606 0.459 0.147 0.774 sum -10.560 -21.832 1.784 24.318 Atomic orbital electron populations 1.69907 1.08781 1.29689 1.39057 1.26803 0.95711 1.04580 0.91824 0.85106 0.78782 0.75873 0.79297 1.18753 1.19843 1.18093 1.19738 0.94903 0.91219 1.46904 0.90439 1.18068 0.92813 0.93206 0.89872 1.20933 1.01846 0.94764 1.05402 1.20404 0.94536 0.97968 1.00000 1.17064 0.94652 0.87057 1.06526 1.41782 1.04298 1.08167 1.75979 1.15866 0.82131 0.83563 0.77993 1.90970 1.67858 1.31700 1.58551 1.44585 1.06035 1.08355 1.79957 1.19554 0.79785 0.82043 1.07362 1.28717 0.96025 0.96811 0.80880 1.72000 1.16494 1.04234 1.26811 1.26847 1.04331 0.96143 0.91879 1.19782 0.74337 0.92224 0.81455 1.93071 1.53542 1.92749 1.77656 1.93069 1.58812 1.91754 1.73437 1.74644 1.15756 1.03453 1.10388 1.85374 1.57858 1.16150 1.36010 1.20696 0.98916 0.93745 0.99244 1.21180 0.97849 0.96383 1.03315 0.90820 0.87170 0.84753 0.74622 0.75006 0.86476 0.85451 0.79161 0.87869 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.75 10.60 21.82 0.23 -46.52 16 2 C 0.02 1.15 5.42 85.24 0.46 1.61 16 3 Si 0.99 39.69 29.56 68.60 2.03 41.72 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.50 -27.06 9.02 23.39 0.21 -26.85 16 8 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 9 C 0.06 3.41 5.55 -21.28 -0.12 3.29 16 10 C -0.21 -9.81 9.74 22.48 0.22 -9.60 16 11 C -0.11 -4.36 9.90 22.14 0.22 -4.14 16 12 C 0.04 1.69 6.30 38.57 0.24 1.93 16 13 N -0.65 -19.60 5.31 -316.78 -1.68 -21.28 16 14 C 0.70 21.24 8.39 179.05 1.50 22.74 16 15 O -0.61 -24.78 13.78 -3.96 -0.05 -24.83 16 16 N -0.73 -13.73 5.55 -482.31 -2.68 -16.41 16 17 C 0.24 3.80 6.30 85.63 0.54 4.34 16 18 C 0.20 3.06 7.88 88.38 0.70 3.76 16 19 N -0.46 -8.93 11.55 -303.19 -3.50 -12.43 16 20 C 0.08 1.37 7.65 138.46 1.06 2.43 16 21 C 0.38 4.51 5.86 71.23 0.42 4.93 16 22 F -0.19 -2.98 17.32 44.97 0.78 -2.20 16 23 F -0.19 -3.01 17.32 44.97 0.78 -2.23 16 24 N -0.34 -5.50 12.16 -60.31 -0.73 -6.23 16 25 O 0.11 1.73 11.31 74.85 0.85 2.57 16 26 C -0.11 -5.19 8.61 22.14 0.19 -4.99 16 27 C -0.17 -9.18 8.62 22.48 0.19 -8.99 16 28 H 0.28 14.26 8.30 -92.70 -0.77 13.49 16 29 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 30 H 0.13 4.19 8.06 -2.91 -0.02 4.16 16 31 H 0.42 8.60 8.83 -92.71 -0.82 7.78 16 32 H 0.41 5.40 8.48 -92.70 -0.79 4.62 16 33 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.19 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 5.11 6.24 -2.91 -0.02 5.09 16 37 H 0.11 6.20 6.14 -2.91 -0.02 6.18 16 Total: -1.00 -73.15 341.40 1.43 -71.72 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.42 Total: 25.66 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.84 Total: -9.54 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -8.36 Total: -102.87 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.79 Total: -22.26 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.56 Total: -4.43 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Total: -73.15 1.43 -71.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364998404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.367 kcal (2) G-P(sol) polarization free energy of solvation -73.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds