Wall clock time and date at job start Tue Mar 31 2020 20:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86802 * 119.99543 * 2 1 4 4 H 1.48502 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47411 * 299.99963 * 3 2 1 6 6 H 1.48500 * 109.47508 * 60.00081 * 3 2 1 7 7 C 1.40029 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00015 * 170.11426 * 7 2 1 9 9 C 1.41535 * 119.99840 * 350.10654 * 7 2 1 10 10 C 1.41171 * 120.99722 * 151.73373 * 9 7 2 11 11 C 1.36592 * 119.12891 * 180.02562 * 10 9 7 12 12 N 1.32069 * 121.25539 * 359.71899 * 11 10 9 13 13 C 1.32490 * 122.23370 * 0.57502 * 12 11 10 14 14 N 1.39457 * 119.65087 * 179.70633 * 13 12 11 15 15 C 1.34779 * 119.99784 * 354.33282 * 14 13 12 16 16 O 1.21577 * 119.99855 * 4.72402 * 15 14 13 17 17 N 1.34781 * 120.00030 * 184.72069 * 15 14 13 18 18 C 1.46497 * 120.00099 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47035 * 180.02562 * 18 17 15 20 20 C 1.41377 * 126.80388 * 94.99684 * 19 18 17 21 21 C 1.35447 * 103.98613 * 179.97438 * 20 19 18 22 22 C 1.50703 * 126.77590 * 179.97438 * 21 20 19 23 23 F 1.39898 * 109.47418 * 300.00200 * 22 21 20 24 24 F 1.39899 * 109.47045 * 60.00821 * 22 21 20 25 25 O 1.34044 * 106.44709 * 0.02562 * 21 20 19 26 26 N 1.20923 * 111.56473 * 359.70723 * 25 21 20 27 27 C 1.38643 * 120.70295 * 359.42894 * 13 12 11 28 28 H 0.96997 * 119.99980 * 359.97438 * 1 2 3 29 29 H 1.07994 * 120.43182 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.36665 * 179.97438 * 11 10 9 31 31 H 0.96993 * 120.00432 * 174.06373 * 14 13 12 32 32 H 0.96999 * 119.99392 * 0.02562 * 17 15 14 33 33 H 1.09010 * 109.46523 * 299.99805 * 18 17 15 34 34 H 1.08996 * 109.47531 * 59.99319 * 18 17 15 35 35 H 1.08005 * 128.00724 * 0.03708 * 20 19 18 36 36 H 1.08997 * 109.46789 * 180.02562 * 22 21 20 37 37 H 1.08000 * 120.66591 * 180.29483 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3966 -1.2125 6 1 1.8826 2.3966 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0756 -1.2195 -0.1611 9 6 1.3158 -2.4294 0.2095 10 6 1.7913 -3.6402 -0.3389 11 6 1.0931 -4.7921 -0.1126 12 7 -0.0112 -4.7930 0.6119 13 6 -0.5067 -3.6865 1.1462 14 7 -1.6802 -3.7485 1.8971 15 6 -2.3658 -4.9059 1.9815 16 8 -1.9175 -5.9162 1.4752 17 7 -3.5482 -4.9431 2.6273 18 6 -4.2932 -6.2012 2.7195 19 6 -5.5711 -5.9732 3.4850 20 6 -6.8461 -5.6952 2.9411 21 6 -7.6466 -5.5765 4.0272 22 6 -9.1239 -5.2786 4.0311 23 9 -9.3519 -4.0423 3.4174 24 9 -9.8033 -6.2801 3.3293 25 8 -6.8652 -5.7752 5.0981 26 7 -5.7207 -5.9987 4.7779 27 6 0.1321 -2.4685 0.9715 28 1 -0.4850 0.8400 0.0004 29 1 2.6948 -3.6552 -0.9304 30 1 1.4531 -5.7205 -0.5307 31 1 -2.0009 -2.9599 2.3618 32 1 -3.9059 -4.1368 3.0309 33 1 -4.5293 -6.5579 1.7169 34 1 -3.6872 -6.9452 3.2365 35 1 -7.1189 -5.6004 1.9004 36 1 -9.4852 -5.2458 5.0589 37 1 -0.2698 -1.5677 1.4113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365072128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:09 Heat of formation + Delta-G solvation = -16.516770 kcal Electronic energy + Delta-G solvation = -27209.056139 eV Core-core repulsion = 22626.395090 eV Total energy + Delta-G solvation = -4582.661049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.098 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.70944 -47.71511 -45.62749 -39.87462 -38.13752 -35.95161 -34.32200 -33.78069 -33.63810 -32.96310 -30.52253 -28.96097 -27.42286 -27.00956 -25.98583 -23.71782 -22.11594 -21.81664 -21.14199 -20.19283 -18.92243 -18.55449 -18.00272 -17.93431 -17.69956 -17.51063 -16.63505 -16.14675 -15.37084 -15.22186 -14.79083 -14.57625 -14.51666 -14.25445 -14.20763 -14.05453 -13.91460 -13.58126 -13.35481 -13.08021 -12.84389 -12.61127 -12.33826 -12.00107 -11.86069 -11.45051 -11.21287 -10.95296 -10.90632 -10.39443 -10.30031 -10.12917 -9.80225 -9.65782 -9.40637 -9.00142 -7.95397 -7.75870 -7.04419 -6.77849 -4.63333 0.61107 1.44921 1.88099 2.66628 2.78192 3.00039 3.01591 3.06912 3.22115 3.30614 3.47043 3.53964 3.78602 3.85427 3.95109 4.22549 4.28359 4.50483 4.60388 4.69691 4.80794 5.21446 5.41772 5.51055 5.67123 5.90697 6.43373 6.51787 6.58303 6.77973 6.93356 7.10492 7.19557 7.39305 7.46311 7.54712 7.85352 8.07400 8.30762 8.44251 8.70913 8.75312 9.07853 9.69165 10.09941 Molecular weight = 338.10amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002128 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.817645 B =13153.498783 C =14388.493738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.272 1.272 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.280 4.280 11 C 0.118 3.882 12 N -0.551 5.551 13 C 0.353 3.647 14 N -0.665 5.665 15 C 0.695 3.305 16 O -0.530 6.530 17 N -0.752 5.752 18 C 0.222 3.778 19 C 0.003 3.997 20 C -0.154 4.154 21 C -0.131 4.131 22 C 0.366 3.634 23 F -0.181 7.181 24 F -0.182 7.182 25 O 0.135 5.865 26 N -0.325 5.325 27 C -0.240 4.240 28 H 0.280 0.720 29 H 0.102 0.898 30 H 0.123 0.877 31 H 0.405 0.595 32 H 0.393 0.607 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.184 0.816 36 H 0.141 0.859 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.601 -5.090 9.087 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.738 3.262 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.304 4.304 11 C -0.035 4.035 12 N -0.270 5.270 13 C 0.127 3.873 14 N -0.313 5.313 15 C 0.395 3.605 16 O -0.400 6.400 17 N -0.412 5.412 18 C 0.097 3.903 19 C -0.155 4.155 20 C -0.175 4.175 21 C -0.195 4.195 22 C 0.311 3.689 23 F -0.162 7.162 24 F -0.163 7.163 25 O 0.058 5.942 26 N -0.022 5.022 27 C -0.265 4.265 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.239 0.761 32 H 0.226 0.774 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.201 0.799 36 H 0.158 0.842 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.002 -6.963 9.707 21.605 hybrid contribution -0.024 2.559 -0.665 2.644 sum -18.025 -4.404 9.041 20.641 Atomic orbital electron populations 1.69760 1.07544 1.29080 1.35830 1.25941 0.94873 1.01406 0.92045 0.86169 0.80855 0.80594 0.78565 1.18355 1.19904 1.19730 1.19595 0.95873 0.89957 1.43311 0.89981 1.17589 0.90126 0.92317 0.86390 1.21714 1.04563 0.94710 1.09392 1.21490 0.90705 0.96596 0.94742 1.67193 1.15210 1.28145 1.16479 1.17951 0.85864 0.90821 0.92684 1.42505 1.24641 1.11767 1.52363 1.15972 0.79985 0.84621 0.79936 1.91029 1.67852 1.32128 1.49024 1.45097 1.22143 1.11653 1.62296 1.19237 0.85081 0.87035 0.98954 1.23711 0.97815 1.04188 0.89749 1.22693 0.91373 1.01868 1.01571 1.24781 0.96595 1.10047 0.88122 1.19070 0.82907 0.72395 0.94517 1.93103 1.94647 1.42672 1.85757 1.93094 1.80033 1.61182 1.81963 1.84888 1.13354 1.63907 1.32035 1.73938 0.96703 1.15068 1.16441 1.21553 1.01746 0.95133 1.08099 0.90904 0.87938 0.85939 0.76092 0.77362 0.88837 0.89458 0.79858 0.84214 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.57 10.83 55.55 0.60 -18.97 16 2 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 3 Si 0.91 17.94 29.57 -169.99 -5.03 12.91 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.67 9.13 -37.65 -0.34 -12.01 16 8 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 9 C 0.14 3.78 5.58 -106.55 -0.59 3.19 16 10 C -0.28 -6.86 9.85 -39.06 -0.38 -7.25 16 11 C 0.12 2.85 11.10 -18.04 -0.20 2.65 16 12 N -0.55 -14.16 7.86 -12.76 -0.10 -14.26 16 13 C 0.35 8.58 7.42 -154.68 -1.15 7.43 16 14 N -0.67 -13.09 5.40 -15.86 -0.09 -13.17 16 15 C 0.70 13.27 8.52 -86.91 -0.74 12.53 16 16 O -0.53 -12.34 14.60 5.30 0.08 -12.26 16 17 N -0.75 -10.31 5.55 -66.41 -0.37 -10.67 16 18 C 0.22 2.65 6.26 -5.20 -0.03 2.62 16 19 C 0.00 0.04 6.70 -82.10 -0.55 -0.51 16 20 C -0.15 -1.26 11.06 -39.38 -0.44 -1.70 16 21 C -0.13 -0.95 6.92 -35.30 -0.24 -1.19 16 22 C 0.37 1.77 5.80 36.01 0.21 1.98 16 23 F -0.18 -1.23 17.32 2.25 0.04 -1.19 16 24 F -0.18 -1.18 17.32 2.25 0.04 -1.14 16 25 O 0.13 1.17 11.20 17.17 0.19 1.37 16 26 N -0.33 -3.54 12.07 33.42 0.40 -3.13 16 27 C -0.24 -6.05 8.60 -38.45 -0.33 -6.38 16 28 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 29 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 30 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 31 H 0.40 6.51 8.71 -40.82 -0.36 6.16 16 32 H 0.39 4.46 8.48 -40.82 -0.35 4.11 16 33 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.18 1.20 8.06 -52.48 -0.42 0.78 16 36 H 0.14 0.13 8.14 -51.93 -0.42 -0.29 16 37 H 0.13 3.23 6.27 -52.49 -0.33 2.90 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -33.12 343.50 -7.05 -40.18 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -3.12 Total: 12.11 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -4.89 Total: 3.06 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.45 Total: -60.21 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.27 Total: -10.89 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.12 -7.05 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365072128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.659 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds